RNA–Protein interactions for RNA: ENST00000491769.1

COL6A3-212, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5

Gene COL6A3, Length 6,731 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-212ENST00000491769 C9orf163Q8N9P6 203 aa8.6□□□□□ -1.03
COL6A3-212ENST00000491769 C4orf26Q17RF5 130 aa8.6□□□□□ -1.03
COL6A3-212ENST00000491769 SMCPP49901 116 aaPredicted RBP8.59□□□□□ -1.03
COL6A3-212ENST00000491769 MIR22HGQ0VDD5 57 aa8.59□□□□□ -1.03
COL6A3-212ENST00000491769 PRO0628Q9UI54 55 aa8.59□□□□□ -1.03
COL6A3-212ENST00000491769 IGLV5-48A0A075B6I7 105 aa8.58□□□□□ -1.04
COL6A3-212ENST00000491769 USP9XQ93008 2570 aaPredicted RBP8.58□□□□□ -1.04
COL6A3-212ENST00000491769 PRR15Q8IV56 129 aa8.58□□□□□ -1.04
COL6A3-212ENST00000491769 Q8N1X5 172 aa8.58□□□□□ -1.04
COL6A3-212ENST00000491769 CASC10Q5T4H9 136 aa8.54□□□□□ -1.04
COL6A3-212ENST00000491769 IGLV7-46A0A075B6I9 117 aa8.54□□□□□ -1.04
COL6A3-212ENST00000491769 A8MUN3 132 aa8.54□□□□□ -1.04
COL6A3-212ENST00000491769 PRR34Q9NV39 138 aa8.53□□□□□ -1.04
COL6A3-212ENST00000491769 SETD2Q9BYW2 2564 aaPredicted RBP8.52□□□□□ -1.05
COL6A3-212ENST00000491769 Q8N377 158 aa8.52□□□□□ -1.05
COL6A3-212ENST00000491769 SPRR4Q96PI1 79 aa8.52□□□□□ -1.05
COL6A3-212ENST00000491769 TNP2Q05952 138 aa8.51□□□□□ -1.05
COL6A3-212ENST00000491769 CAMK2N1Q7Z7J9 78 aa8.51□□□□□ -1.05
COL6A3-212ENST00000491769 LITAFQ99732 161 aa8.5□□□□□ -1.05
COL6A3-212ENST00000491769 LINC00612Q8N6U2 182 aa8.49□□□□□ -1.05
COL6A3-212ENST00000491769 PKD1L2Q7Z442 2459 aa8.49□□□□□ -1.05
COL6A3-212ENST00000491769 TLX1NBP0CAT3 122 aa8.48□□□□□ -1.05
COL6A3-212ENST00000491769 CDC42SE1Q9NRR8 79 aa8.48□□□□□ -1.05
COL6A3-212ENST00000491769 ANKRD11Q6UB99 2663 aaPredicted RBP8.47□□□□□ -1.05
COL6A3-212ENST00000491769 PLA2G2DQ9UNK4 145 aa8.47□□□□□ -1.05
COL6A3-212ENST00000491769 FAM104AQ969W3 186 aa8.46□□□□□ -1.05
COL6A3-212ENST00000491769 PRR26Q8N8Z3 221 aa8.46□□□□□ -1.06
COL6A3-212ENST00000491769 PRO0461Q9UI25 63 aa8.46□□□□□ -1.06
COL6A3-212ENST00000491769 ANKRD17O75179 2603 aaKnown RBP8.46□□□□□ -1.06
COL6A3-212ENST00000491769 GIG44P09565 113 aaPredicted RBP8.45□□□□□ -1.06
COL6A3-212ENST00000491769 CYP4F30PQ9H0H9 118 aa8.45□□□□□ -1.06
COL6A3-212ENST00000491769 FASNP49327 2511 aaKnown RBP8.45□□□□□ -1.06
COL6A3-212ENST00000491769 ERC2-IT1O76042 136 aa8.44□□□□□ -1.06
COL6A3-212ENST00000491769 CNBPP62633 177 aaKnown RBP8.44□□□□□ -1.06
COL6A3-212ENST00000491769 A0A096LNT2 108 aa8.44□□□□□ -1.06
COL6A3-212ENST00000491769 ACANP16112 2415 aa8.41□□□□□ -1.06
COL6A3-212ENST00000491769 KLK9Q2XQG4 91 aa8.41□□□□□ -1.06
COL6A3-212ENST00000491769 POLQO75417 2590 aa8.41□□□□□ -1.06
COL6A3-212ENST00000491769 MTORP42345 2549 aa8.41□□□□□ -1.06
COL6A3-212ENST00000491769 USP9YO00507 2555 aaPredicted RBP8.39□□□□□ -1.07
COL6A3-212ENST00000491769 SPTBN4Q9H254 2564 aa8.39□□□□□ -1.07
COL6A3-212ENST00000491769 RPS28P62857 69 aaKnown RBP8.39□□□□□ -1.07
COL6A3-212ENST00000491769 PCSK5Q92824 1860 aa8.38□□□□□ -1.07
COL6A3-212ENST00000491769 LUZP6Q538Z0 58 aa8.38□□□□□ -1.07
COL6A3-212ENST00000491769 LINC00483Q53H64 154 aa8.38□□□□□ -1.07
COL6A3-212ENST00000491769 WDR87Q6ZQQ6 2873 aa8.37□□□□□ -1.07
COL6A3-212ENST00000491769 EIF4EBP3O60516 100 aaPredicted RBP8.37□□□□□ -1.07
COL6A3-212ENST00000491769 CEP295Q9C0D2 2601 aa8.35□□□□□ -1.07
COL6A3-212ENST00000491769 KRTAP1-3Q8IUG1 177 aa8.34□□□□□ -1.07
COL6A3-212ENST00000491769 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP8.32□□□□□ -1.08
COL6A3-212ENST00000491769 A0A1W2PNM2 257 aa8.31□□□□□ -1.08
COL6A3-212ENST00000491769 KRTAP1-1Q07627 177 aa8.3□□□□□ -1.08
COL6A3-212ENST00000491769 CD164Q04900 197 aa8.27□□□□□ -1.08
COL6A3-212ENST00000491769 S4R3F8 94 aa8.27□□□□□ -1.09
COL6A3-212ENST00000491769 HRES1P13985 223 aa8.27□□□□□ -1.09
COL6A3-212ENST00000491769 CSAG1Q6PB30 78 aa8.26□□□□□ -1.09
COL6A3-212ENST00000491769 Q5VSD8 79 aa8.25□□□□□ -1.09
COL6A3-212ENST00000491769 SRCAPQ6ZRS2 3230 aa8.24□□□□□ -1.09
COL6A3-212ENST00000491769 SEC61BP60468 96 aaKnown RBP8.22□□□□□ -1.09
COL6A3-212ENST00000491769 KLKP1Q107X0 134 aa8.21□□□□□ -1.09
COL6A3-212ENST00000491769 A0A1B0GU33 70 aa8.21□□□□□ -1.09
COL6A3-212ENST00000491769 Q1T7F1 81 aa8.2□□□□□ -1.1
COL6A3-212ENST00000491769 FAM229BQ4G0N7 80 aa8.19□□□□□ -1.1
COL6A3-212ENST00000491769 SPANXA2-OT1Q8N9U9 137 aa8.18□□□□□ -1.1
COL6A3-212ENST00000491769 ZCCHC13Q8WW36 166 aaKnown RBP8.18□□□□□ -1.1
COL6A3-212ENST00000491769 R4GN34 69 aa8.16□□□□□ -1.1
COL6A3-212ENST00000491769 H7BZZ5 65 aa8.15□□□□□ -1.11
COL6A3-212ENST00000491769 PLAC8Q9NZF1 115 aa8.14□□□□□ -1.11
COL6A3-212ENST00000491769 LCA10Q71F78 164 aa8.14□□□□□ -1.11
COL6A3-212ENST00000491769 KTN1-AS1Q86SY8 53 aa8.13□□□□□ -1.11
COL6A3-212ENST00000491769 MGAM2Q2M2H8 2515 aa8.11□□□□□ -1.11
COL6A3-212ENST00000491769 USP24Q9UPU5 2620 aa8.11□□□□□ -1.11
COL6A3-212ENST00000491769 LCE6AA0A183 80 aa8.1□□□□□ -1.11
COL6A3-212ENST00000491769 CR1P17927 2039 aa8.08□□□□□ -1.12
COL6A3-212ENST00000491769 HECTD1Q9ULT8 2610 aa8.08□□□□□ -1.12
COL6A3-212ENST00000491769 PLAC4Q8WY50 150 aa8.07□□□□□ -1.12
COL6A3-212ENST00000491769 CENPFP49454 3210 aa8.07□□□□□ -1.12
COL6A3-212ENST00000491769 SPINK7P58062 85 aa8.06□□□□□ -1.12
COL6A3-212ENST00000491769 DMAC1Q96GE9 116 aa8.06□□□□□ -1.12
COL6A3-212ENST00000491769 Q8N9P0 234 aaPredicted RBP8.05□□□□□ -1.12
COL6A3-212ENST00000491769 FLNBO75369 2602 aaKnown RBP8.04□□□□□ -1.12
COL6A3-212ENST00000491769 EPG5Q9HCE0 2579 aa8.02□□□□□ -1.13
COL6A3-212ENST00000491769 EP400Q96L91 3159 aa8.02□□□□□ -1.13
COL6A3-212ENST00000491769 KRTAP10-1P60331 282 aa8.01□□□□□ -1.13
COL6A3-212ENST00000491769 M0QZ58 72 aa8□□□□□ -1.13
COL6A3-212ENST00000491769 MMP24-AS1A0A0U1RRL7 71 aa7.98□□□□□ -1.13
COL6A3-212ENST00000491769 Q5W150 140 aa7.98□□□□□ -1.13
COL6A3-212ENST00000491769 KRTAP10-2P60368 255 aa7.98□□□□□ -1.13
COL6A3-212ENST00000491769 OCR1Q9BZK8 76 aa7.98□□□□□ -1.13
COL6A3-212ENST00000491769 OXTP01178 125 aa7.98□□□□□ -1.13
COL6A3-212ENST00000491769 WIPF1O43516 503 aa7.96□□□□□ -1.14
COL6A3-212ENST00000491769 KRTAP1-5Q9BYS1 174 aa7.91□□□□□ -1.14
COL6A3-212ENST00000491769 H1FX-AS1Q4G0G2 97 aa7.9□□□□□ -1.15
COL6A3-212ENST00000491769 A0A0A0MQY5 61 aa7.87□□□□□ -1.15
COL6A3-212ENST00000491769 ADM2Q7Z4H4 148 aa7.87□□□□□ -1.15
COL6A3-212ENST00000491769 Q75L30 129 aa7.86□□□□□ -1.15
COL6A3-212ENST00000491769 BPTFQ12830 3046 aa7.86□□□□□ -1.15
COL6A3-212ENST00000491769 FP248Q71RG6 208 aaPredicted RBP7.85□□□□□ -1.15
COL6A3-212ENST00000491769 SPRR1AP35321 89 aa7.84□□□□□ -1.15
COL6A3-212ENST00000491769 LINC01558Q9Y6Z2 57 aa7.83□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 55.8 ms