RNA–Protein interactions for RNA: ENST00000491552.1

MSH5-SAPCD1-206, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

TSL 3

Gene MSH5-SAPCD1, Length 706 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-206ENST00000491552 OR13C6PQ8NH95 151 aa9.69□□□□□ -0.86
MSH5-SAPCD1-206ENST00000491552 PPDPFQ9H3Y8 114 aa9.69□□□□□ -0.86
MSH5-SAPCD1-206ENST00000491552 CBY1Q9Y3M2 126 aa9.69□□□□□ -0.86
MSH5-SAPCD1-206ENST00000491552 LINC00518Q8N0U6 118 aa9.68□□□□□ -0.86
MSH5-SAPCD1-206ENST00000491552 B5MCH6 92 aa9.67□□□□□ -0.86
MSH5-SAPCD1-206ENST00000491552 CRYGAP11844 174 aa9.67□□□□□ -0.86
MSH5-SAPCD1-206ENST00000491552 MUSTN1Q8IVN3 82 aa9.67□□□□□ -0.86
MSH5-SAPCD1-206ENST00000491552 TMA7Q9Y2S6 64 aaKnown RBP9.67□□□□□ -0.86
MSH5-SAPCD1-206ENST00000491552 A0A087X002 238 aa9.66□□□□□ -0.86
MSH5-SAPCD1-206ENST00000491552 ANAPC11Q9NYG5 84 aa9.66□□□□□ -0.86
MSH5-SAPCD1-206ENST00000491552 ZNF73O43830 326 aaPredicted RBP9.65□□□□□ -0.86
MSH5-SAPCD1-206ENST00000491552 JOSD1Q15040 202 aaPredicted RBP9.65□□□□□ -0.86
MSH5-SAPCD1-206ENST00000491552 FAM229BQ4G0N7 80 aa9.65□□□□□ -0.86
MSH5-SAPCD1-206ENST00000491552 SMCR5Q8TEV8 140 aa9.65□□□□□ -0.86
MSH5-SAPCD1-206ENST00000491552 COX8AP10176 69 aa9.64□□□□□ -0.87
MSH5-SAPCD1-206ENST00000491552 Q6ZRX8 168 aa9.64□□□□□ -0.87
MSH5-SAPCD1-206ENST00000491552 ZNF706Q9Y5V0 76 aaPredicted RBP9.64□□□□□ -0.87
MSH5-SAPCD1-206ENST00000491552 SPRR4Q96PI1 79 aa9.63□□□□□ -0.87
MSH5-SAPCD1-206ENST00000491552 PAM16Q9Y3D7 125 aa9.63□□□□□ -0.87
MSH5-SAPCD1-206ENST00000491552 HINT1P49773 126 aaPredicted RBP9.62□□□□□ -0.87
MSH5-SAPCD1-206ENST00000491552 SPATA45Q537H7 98 aa9.62□□□□□ -0.87
MSH5-SAPCD1-206ENST00000491552 TYMSOSQ8TAI1 123 aa9.62□□□□□ -0.87
MSH5-SAPCD1-206ENST00000491552 VAMP8Q9BV40 100 aa9.62□□□□□ -0.87
MSH5-SAPCD1-206ENST00000491552 DLEU1O43261 78 aa9.61□□□□□ -0.87
MSH5-SAPCD1-206ENST00000491552 KRTAP13-2Q52LG2 175 aa9.61□□□□□ -0.87
MSH5-SAPCD1-206ENST00000491552 Q9BRP9 147 aa9.61□□□□□ -0.87
MSH5-SAPCD1-206ENST00000491552 A6NDN8 102 aa9.59□□□□□ -0.87
MSH5-SAPCD1-206ENST00000491552 ERC2-IT1O76042 136 aa9.59□□□□□ -0.87
MSH5-SAPCD1-206ENST00000491552 C14orf144Q96I85 54 aa9.59□□□□□ -0.87
MSH5-SAPCD1-206ENST00000491552 TRAV13-2A0A0B4J235 113 aa9.57□□□□□ -0.88
MSH5-SAPCD1-206ENST00000491552 C6orf99Q4VX62 202 aa9.57□□□□□ -0.88
MSH5-SAPCD1-206ENST00000491552 PYY3Q5JQD4 70 aa9.56□□□□□ -0.88
MSH5-SAPCD1-206ENST00000491552 HIST1H4GQ99525 98 aa9.56□□□□□ -0.88
MSH5-SAPCD1-206ENST00000491552 A4D1N5 150 aa9.55□□□□□ -0.88
MSH5-SAPCD1-206ENST00000491552 COX7BP24311 80 aa9.55□□□□□ -0.88
MSH5-SAPCD1-206ENST00000491552 LINC00483Q53H64 154 aa9.55□□□□□ -0.88
MSH5-SAPCD1-206ENST00000491552 SLC25A34Q6PIV7 304 aa9.55□□□□□ -0.88
MSH5-SAPCD1-206ENST00000491552 C3orf22Q8N5N4 141 aa9.55□□□□□ -0.88
MSH5-SAPCD1-206ENST00000491552 ELOF1P60002 83 aaKnown RBP9.54□□□□□ -0.88
MSH5-SAPCD1-206ENST00000491552 GAGE2AQ6NT46 116 aa9.54□□□□□ -0.88
MSH5-SAPCD1-206ENST00000491552 HMCN2Q8NDA2 5059 aa9.54□□□□□ -0.88
MSH5-SAPCD1-206ENST00000491552 DHRS4-AS1Q9P1J3 65 aa9.53□□□□□ -0.88
MSH5-SAPCD1-206ENST00000491552 HIGD1BQ9P298 99 aa9.53□□□□□ -0.88
MSH5-SAPCD1-206ENST00000491552 TRBV7-6A0A0J9YX20 115 aa9.52□□□□□ -0.89
MSH5-SAPCD1-206ENST00000491552 LINC00304Q8N9R0 145 aa9.51□□□□□ -0.89
MSH5-SAPCD1-206ENST00000491552 SMIM11BQ8TCY0 68 aa9.51□□□□□ -0.89
MSH5-SAPCD1-206ENST00000491552 A0A1B0GWB2 263 aa9.5□□□□□ -0.89
MSH5-SAPCD1-206ENST00000491552 C2orf91Q6ZV80 131 aa9.5□□□□□ -0.89
MSH5-SAPCD1-206ENST00000491552 ST20-AS1Q8NBB2 130 aa9.5□□□□□ -0.89
MSH5-SAPCD1-206ENST00000491552 TSPAN13O95857 204 aa9.49□□□□□ -0.89
MSH5-SAPCD1-206ENST00000491552 C12orf57Q99622 126 aa9.49□□□□□ -0.89
MSH5-SAPCD1-206ENST00000491552 IGLV9-49A0A0B4J1Y8 123 aa9.46□□□□□ -0.9
MSH5-SAPCD1-206ENST00000491552 TAL2Q16559 108 aa9.45□□□□□ -0.9
MSH5-SAPCD1-206ENST00000491552 MOBPQ13875 183 aa9.44□□□□□ -0.9
MSH5-SAPCD1-206ENST00000491552 Q8NBF4 154 aa9.44□□□□□ -0.9
MSH5-SAPCD1-206ENST00000491552 CFC1BP0CG36 223 aa9.43□□□□□ -0.9
MSH5-SAPCD1-206ENST00000491552 CFC1P0CG37 223 aa9.43□□□□□ -0.9
MSH5-SAPCD1-206ENST00000491552 SPRR1BP22528 89 aa9.43□□□□□ -0.9
MSH5-SAPCD1-206ENST00000491552 CTAG1AP78358 180 aa9.43□□□□□ -0.9
MSH5-SAPCD1-206ENST00000491552 VAMP3Q15836 100 aa9.43□□□□□ -0.9
MSH5-SAPCD1-206ENST00000491552 SPAG11AQ6PDA7 123 aa9.43□□□□□ -0.9
MSH5-SAPCD1-206ENST00000491552 CEND1Q8N111 149 aa9.43□□□□□ -0.9
MSH5-SAPCD1-206ENST00000491552 RAB37Q96AX2 223 aa9.42□□□□□ -0.9
MSH5-SAPCD1-206ENST00000491552 NHP2Q9NX24 153 aaKnown RBP9.42□□□□□ -0.9
MSH5-SAPCD1-206ENST00000491552 A0A0B4J2C4 111 aa9.41□□□□□ -0.9
MSH5-SAPCD1-206ENST00000491552 C9orf153Q5TBE3 101 aa9.41□□□□□ -0.9
MSH5-SAPCD1-206ENST00000491552 SSBP3-AS1Q7Z2R9 100 aa9.41□□□□□ -0.9
MSH5-SAPCD1-206ENST00000491552 TMEM238LA0A1B0GVL6 79 aa9.4□□□□□ -0.9
MSH5-SAPCD1-206ENST00000491552 A6NJY4 79 aa9.4□□□□□ -0.9
MSH5-SAPCD1-206ENST00000491552 PRR4Q16378 134 aa9.4□□□□□ -0.9
MSH5-SAPCD1-206ENST00000491552 C4orf48Q5BLP8 95 aa9.4□□□□□ -0.9
MSH5-SAPCD1-206ENST00000491552 SLC25A20O43772 301 aa9.39□□□□□ -0.91
MSH5-SAPCD1-206ENST00000491552 DEFB105AQ8NG35 78 aa9.39□□□□□ -0.91
MSH5-SAPCD1-206ENST00000491552 UQCR10Q9UDW1 63 aa9.39□□□□□ -0.91
MSH5-SAPCD1-206ENST00000491552 TEX49A0A1B0GTD5 131 aa9.38□□□□□ -0.91
MSH5-SAPCD1-206ENST00000491552 H7C2G1 150 aa9.38□□□□□ -0.91
MSH5-SAPCD1-206ENST00000491552 HSD52Q0P140 79 aa9.38□□□□□ -0.91
MSH5-SAPCD1-206ENST00000491552 BVES-AS1Q5T3Y7 98 aa9.38□□□□□ -0.91
MSH5-SAPCD1-206ENST00000491552 LINC00575Q6W349 94 aa9.38□□□□□ -0.91
MSH5-SAPCD1-206ENST00000491552 LAMTOR3Q9UHA4 124 aa9.38□□□□□ -0.91
MSH5-SAPCD1-206ENST00000491552 FXYD2P54710 66 aa9.37□□□□□ -0.91
MSH5-SAPCD1-206ENST00000491552 IGLV5-48A0A075B6I7 105 aa9.36□□□□□ -0.91
MSH5-SAPCD1-206ENST00000491552 LINC01547P58512 204 aaPredicted RBP9.36□□□□□ -0.91
MSH5-SAPCD1-206ENST00000491552 SPINK1P00995 79 aa9.35□□□□□ -0.91
MSH5-SAPCD1-206ENST00000491552 hADV29S1A0JD25 119 aa9.34□□□□□ -0.91
MSH5-SAPCD1-206ENST00000491552 Q1RN00 199 aa9.34□□□□□ -0.91
MSH5-SAPCD1-206ENST00000491552 RETNLBQ9BQ08 111 aa9.34□□□□□ -0.91
MSH5-SAPCD1-206ENST00000491552 PRO1854Q9UHT4 67 aa9.33□□□□□ -0.92
MSH5-SAPCD1-206ENST00000491552 SMIM29Q86T20 159 aa9.32□□□□□ -0.92
MSH5-SAPCD1-206ENST00000491552 SMIM6P0DI80 62 aa9.31□□□□□ -0.92
MSH5-SAPCD1-206ENST00000491552 Q6ZQY7 126 aa9.31□□□□□ -0.92
MSH5-SAPCD1-206ENST00000491552 Q8N377 158 aa9.31□□□□□ -0.92
MSH5-SAPCD1-206ENST00000491552 RPS29P62273 56 aaKnown RBP9.3□□□□□ -0.92
MSH5-SAPCD1-206ENST00000491552 LRP2P98164 4655 aa9.28□□□□□ -0.92
MSH5-SAPCD1-206ENST00000491552 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP9.28□□□□□ -0.92
MSH5-SAPCD1-206ENST00000491552 PRO1933Q9H354 126 aa9.28□□□□□ -0.92
MSH5-SAPCD1-206ENST00000491552 H0YGX0 51 aa9.27□□□□□ -0.93
MSH5-SAPCD1-206ENST00000491552 K7ERJ3 54 aa9.26□□□□□ -0.93
MSH5-SAPCD1-206ENST00000491552 SNCGO76070 127 aa9.25□□□□□ -0.93
MSH5-SAPCD1-206ENST00000491552 LPAP08519 4548 aa9.25□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 52.2 ms