RNA–Protein interactions for RNA: ENST00000490866.2

SYNE1-229, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 581 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-229ENST00000490866 IGLV1-50A0A075B6I6 118 aa4.43□□□□□ -1.7
SYNE1-229ENST00000490866 TRAV23DV6A0A075B6W5 121 aa4.43□□□□□ -1.7
SYNE1-229ENST00000490866 A0A096LNI7 61 aa4.43□□□□□ -1.7
SYNE1-229ENST00000490866 IGKV2-24A0A0C4DH68 120 aa4.43□□□□□ -1.7
SYNE1-229ENST00000490866 A0A1W2PPM0 123 aa4.43□□□□□ -1.7
SYNE1-229ENST00000490866 TAX1BP3O14907 124 aa4.43□□□□□ -1.7
SYNE1-229ENST00000490866 ATXN8Q156A1 80 aa4.43□□□□□ -1.7
SYNE1-229ENST00000490866 C21orf62-AS1Q17RA5 79 aa4.43□□□□□ -1.7
SYNE1-229ENST00000490866 LINC00337Q8N6G1 96 aa4.43□□□□□ -1.7
SYNE1-229ENST00000490866 C7orf33Q8WU49 177 aa4.43□□□□□ -1.7
SYNE1-229ENST00000490866 DIRC1Q969H9 104 aa4.43□□□□□ -1.7
SYNE1-229ENST00000490866 PLAC8Q9NZF1 115 aa4.43□□□□□ -1.7
SYNE1-229ENST00000490866 DHRS4-AS1Q9P1J3 65 aa4.43□□□□□ -1.7
SYNE1-229ENST00000490866 GAGE10A6NGK3 116 aa4.42□□□□□ -1.7
SYNE1-229ENST00000490866 H3BUT2 72 aa4.42□□□□□ -1.7
SYNE1-229ENST00000490866 M0QXV9 152 aa4.42□□□□□ -1.7
SYNE1-229ENST00000490866 ZNF73O43830 326 aaPredicted RBP4.42□□□□□ -1.7
SYNE1-229ENST00000490866 TSPAN13O95857 204 aa4.42□□□□□ -1.7
SYNE1-229ENST00000490866 DNAL4O96015 105 aa4.42□□□□□ -1.7
SYNE1-229ENST00000490866 LINC00167Q96N53 147 aa4.42□□□□□ -1.7
SYNE1-229ENST00000490866 ALMS1Q8TCU4 4167 aa4.42□□□□□ -1.7
SYNE1-229ENST00000490866 TRBV10-3A0A0K0K1G6 114 aa4.41□□□□□ -1.7
SYNE1-229ENST00000490866 NCR3O14931 201 aa4.41□□□□□ -1.7
SYNE1-229ENST00000490866 TRACP01848 142 aa4.41□□□□□ -1.7
SYNE1-229ENST00000490866 UBE2BP63146 152 aa4.41□□□□□ -1.7
SYNE1-229ENST00000490866 REG3GQ6UW15 175 aa4.41□□□□□ -1.7
SYNE1-229ENST00000490866 Q6ZSA8 131 aa4.41□□□□□ -1.7
SYNE1-229ENST00000490866 SMIM11BQ8TCY0 68 aa4.41□□□□□ -1.7
SYNE1-229ENST00000490866 PPDPFLQ8WWR9 84 aa4.41□□□□□ -1.7
SYNE1-229ENST00000490866 A0A087WYN8 130 aa4.4□□□□□ -1.71
SYNE1-229ENST00000490866 ETDCA0A1B0GVM5 59 aa4.4□□□□□ -1.71
SYNE1-229ENST00000490866 F8W1H4 67 aa4.4□□□□□ -1.71
SYNE1-229ENST00000490866 H7C2G1 150 aa4.4□□□□□ -1.71
SYNE1-229ENST00000490866 COX7BP24311 80 aa4.4□□□□□ -1.71
SYNE1-229ENST00000490866 SPRR1AP35321 89 aa4.4□□□□□ -1.71
SYNE1-229ENST00000490866 C6orf99Q4VX62 202 aa4.4□□□□□ -1.71
SYNE1-229ENST00000490866 FAM19A5Q7Z5A7 132 aaPredicted RBP4.4□□□□□ -1.71
SYNE1-229ENST00000490866 hADV29S1A0JD25 119 aa4.39□□□□□ -1.71
SYNE1-229ENST00000490866 TMEM256-PLSCR3K7ERE1 68 aa4.39□□□□□ -1.71
SYNE1-229ENST00000490866 K7ERJ3 54 aa4.39□□□□□ -1.71
SYNE1-229ENST00000490866 ELOF1P60002 83 aaKnown RBP4.39□□□□□ -1.71
SYNE1-229ENST00000490866 PRR3P79522 188 aaKnown RBP4.39□□□□□ -1.71
SYNE1-229ENST00000490866 UBE2V1Q13404 147 aa4.39□□□□□ -1.71
SYNE1-229ENST00000490866 SERTAD4-AS1Q5TG53 156 aa4.39□□□□□ -1.71
SYNE1-229ENST00000490866 SPCS1Q9Y6A9 102 aa4.39□□□□□ -1.71
SYNE1-229ENST00000490866 A0A1W2PNN7 141 aa4.38□□□□□ -1.71
SYNE1-229ENST00000490866 TRIAP1O43715 76 aa4.38□□□□□ -1.71
SYNE1-229ENST00000490866 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP4.38□□□□□ -1.71
SYNE1-229ENST00000490866 A0A1B0GVY2 172 aa4.37□□□□□ -1.71
SYNE1-229ENST00000490866 FAM168BA1KXE4 195 aa4.37□□□□□ -1.71
SYNE1-229ENST00000490866 RPL37AP8A6NKH3 93 aa4.37□□□□□ -1.71
SYNE1-229ENST00000490866 K7EP34 96 aa4.37□□□□□ -1.71
SYNE1-229ENST00000490866 LST1O00453 97 aa4.37□□□□□ -1.71
SYNE1-229ENST00000490866 BCE1O60756 84 aa4.37□□□□□ -1.71
SYNE1-229ENST00000490866 LINC00575Q6W349 94 aa4.37□□□□□ -1.71
SYNE1-229ENST00000490866 Q6ZRX8 168 aa4.37□□□□□ -1.71
SYNE1-229ENST00000490866 B5MCH6 92 aa4.36□□□□□ -1.71
SYNE1-229ENST00000490866 CIRBP-AS1Q8TBR5 109 aa4.36□□□□□ -1.71
SYNE1-229ENST00000490866 LINC01600Q96MT4 127 aa4.36□□□□□ -1.71
SYNE1-229ENST00000490866 ORMDL1Q9P0S3 153 aa4.36□□□□□ -1.71
SYNE1-229ENST00000490866 ZNF706Q9Y5V0 76 aaPredicted RBP4.36□□□□□ -1.71
SYNE1-229ENST00000490866 DNAH10Q8IVF4 4471 aa4.35□□□□□ -1.71
SYNE1-229ENST00000490866 KRTAP4-16G5E9R7 235 aaPredicted RBP4.35□□□□□ -1.71
SYNE1-229ENST00000490866 JMJD7-PLA2G4BH0Y9G9 81 aa4.35□□□□□ -1.71
SYNE1-229ENST00000490866 H3BT86 120 aa4.35□□□□□ -1.71
SYNE1-229ENST00000490866 CHTF8P0CG12 524 aa4.35□□□□□ -1.71
SYNE1-229ENST00000490866 UBE2AP49459 152 aa4.35□□□□□ -1.71
SYNE1-229ENST00000490866 KRTAP7-1Q8IUC3 87 aa4.35□□□□□ -1.71
SYNE1-229ENST00000490866 Q8NDZ9 215 aa4.35□□□□□ -1.71
SYNE1-229ENST00000490866 HECTD4Q9Y4D8 3996 aa4.35□□□□□ -1.71
SYNE1-229ENST00000490866 DNAH2Q9P225 4427 aa4.35□□□□□ -1.71
SYNE1-229ENST00000490866 H3BMG7 143 aa4.34□□□□□ -1.71
SYNE1-229ENST00000490866 CDK2AP2O75956 126 aa4.34□□□□□ -1.71
SYNE1-229ENST00000490866 TCL1BO95988 128 aa4.34□□□□□ -1.71
SYNE1-229ENST00000490866 PDE6GP18545 87 aa4.34□□□□□ -1.71
SYNE1-229ENST00000490866 KRTAP10-1P60331 282 aa4.34□□□□□ -1.71
SYNE1-229ENST00000490866 LINC01620Q4KN68 170 aa4.34□□□□□ -1.71
SYNE1-229ENST00000490866 PHF5AQ7RTV0 110 aaKnown RBP4.34□□□□□ -1.71
SYNE1-229ENST00000490866 FAM19A1Q7Z5A9 133 aa4.34□□□□□ -1.71
SYNE1-229ENST00000490866 HYDINQ4G0P3 5121 aa4.34□□□□□ -1.71
SYNE1-229ENST00000490866 KMT2CQ8NEZ4 4911 aaKnown RBP4.34□□□□□ -1.72
SYNE1-229ENST00000490866 DNAH17Q9UFH2 4485 aa4.33□□□□□ -1.72
SYNE1-229ENST00000490866 FRAS1Q86XX4 4008 aa4.33□□□□□ -1.72
SYNE1-229ENST00000490866 ZNF861PO60384 105 aa4.33□□□□□ -1.72
SYNE1-229ENST00000490866 SCXQ7RTU7 201 aa4.33□□□□□ -1.72
SYNE1-229ENST00000490866 ANKRD29Q8N6D5 301 aa4.33□□□□□ -1.72
SYNE1-229ENST00000490866 SACSQ9NZJ4 4579 aa4.32□□□□□ -1.72
SYNE1-229ENST00000490866 TEX49A0A1B0GTD5 131 aa4.32□□□□□ -1.72
SYNE1-229ENST00000490866 A0A1B0GV90 55 aa4.32□□□□□ -1.72
SYNE1-229ENST00000490866 J3QR89 54 aa4.32□□□□□ -1.72
SYNE1-229ENST00000490866 BAALC-AS2P0C853 105 aa4.32□□□□□ -1.72
SYNE1-229ENST00000490866 RPL37AP61513 92 aaKnown RBP4.32□□□□□ -1.72
SYNE1-229ENST00000490866 C1orf137Q5JT78 98 aa4.32□□□□□ -1.72
SYNE1-229ENST00000490866 FAM30AQ9NZY2 134 aa4.32□□□□□ -1.72
SYNE1-229ENST00000490866 PSORS1C2Q9UIG4 136 aa4.32□□□□□ -1.72
SYNE1-229ENST00000490866 A0A1B0GW54 56 aa4.31□□□□□ -1.72
SYNE1-229ENST00000490866 C9JAW5 83 aa4.31□□□□□ -1.72
SYNE1-229ENST00000490866 PANO1I0J062 215 aa4.31□□□□□ -1.72
SYNE1-229ENST00000490866 IGLV7-43P04211 117 aa4.31□□□□□ -1.72
SYNE1-229ENST00000490866 CLEC2BQ92478 149 aa4.31□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms