RNA–Protein interactions for RNA: ENST00000489072.5

HMGN1-217, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 3

Gene HMGN1, Length 1,014 nt, Biotype processed transcript, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-217ENST00000489072 LINC00483Q53H64 154 aa14.38□□□□□ -0.11
HMGN1-217ENST00000489072 Q6ZRX8 168 aa14.38□□□□□ -0.11
HMGN1-217ENST00000489072 LINC00308Q8TCZ7 52 aa14.38□□□□□ -0.11
HMGN1-217ENST00000489072 TRAV23DV6A0A075B6W5 121 aa14.37□□□□□ -0.11
HMGN1-217ENST00000489072 ZNF815PA8K554 130 aa14.37□□□□□ -0.11
HMGN1-217ENST00000489072 TIMM17BO60830 172 aa14.37□□□□□ -0.11
HMGN1-217ENST00000489072 CTAG1AP78358 180 aa14.37□□□□□ -0.11
HMGN1-217ENST00000489072 GAGE2AQ6NT46 116 aa14.35□□□□□ -0.11
HMGN1-217ENST00000489072 Q8NBF4 154 aa14.33□□□□□ -0.12
HMGN1-217ENST00000489072 SPANXCQ9NY87 97 aa14.33□□□□□ -0.12
HMGN1-217ENST00000489072 ZNF73O43830 326 aaPredicted RBP14.32□□□□□ -0.12
HMGN1-217ENST00000489072 SPAG11AQ6PDA7 123 aa14.32□□□□□ -0.12
HMGN1-217ENST00000489072 ANKRD39Q53RE8 183 aa14.29□□□□□ -0.12
HMGN1-217ENST00000489072 C20orf202A1L168 122 aa14.27□□□□□ -0.13
HMGN1-217ENST00000489072 JOSD1Q15040 202 aaPredicted RBP14.27□□□□□ -0.13
HMGN1-217ENST00000489072 C4orf48Q5BLP8 95 aa14.27□□□□□ -0.13
HMGN1-217ENST00000489072 ATOH7Q8N100 152 aa14.27□□□□□ -0.13
HMGN1-217ENST00000489072 MUC2Q02817 5179 aa14.27□□□□□ -0.13
HMGN1-217ENST00000489072 IGLV7-46A0A075B6I9 117 aa14.26□□□□□ -0.13
HMGN1-217ENST00000489072 OR13C6PQ8NH95 151 aa14.26□□□□□ -0.13
HMGN1-217ENST00000489072 IGLV9-49A0A0B4J1Y8 123 aa14.25□□□□□ -0.13
HMGN1-217ENST00000489072 MOBPQ13875 183 aa14.25□□□□□ -0.13
HMGN1-217ENST00000489072 TPRXLQ17RH7 258 aa14.23□□□□□ -0.13
HMGN1-217ENST00000489072 ST20-AS1Q8NBB2 130 aa14.23□□□□□ -0.13
HMGN1-217ENST00000489072 SPANXDQ9BXN6 97 aa14.23□□□□□ -0.13
HMGN1-217ENST00000489072 CBY1Q9Y3M2 126 aa14.23□□□□□ -0.13
HMGN1-217ENST00000489072 SCGB1D4Q6XE38 83 aa14.22□□□□□ -0.13
HMGN1-217ENST00000489072 SPINK1P00995 79 aa14.19□□□□□ -0.14
HMGN1-217ENST00000489072 HINT1P49773 126 aaPredicted RBP14.19□□□□□ -0.14
HMGN1-217ENST00000489072 SSBP3-AS1Q7Z2R9 100 aa14.19□□□□□ -0.14
HMGN1-217ENST00000489072 PCP2Q8IVA1 136 aa14.19□□□□□ -0.14
HMGN1-217ENST00000489072 LINC00518Q8N0U6 118 aa14.18□□□□□ -0.14
HMGN1-217ENST00000489072 HIST3H2BBQ8N257 126 aa14.17□□□□□ -0.14
HMGN1-217ENST00000489072 CDIP1Q9H305 208 aa14.16□□□□□ -0.14
HMGN1-217ENST00000489072 FP248Q71RG6 208 aaPredicted RBP14.15□□□□□ -0.14
HMGN1-217ENST00000489072 C5orf52A6NGY3 159 aa14.14□□□□□ -0.15
HMGN1-217ENST00000489072 AKR1D1P51857 326 aa14.14□□□□□ -0.15
HMGN1-217ENST00000489072 HIST1H2BLQ99880 126 aa14.14□□□□□ -0.15
HMGN1-217ENST00000489072 IFITM1P13164 125 aa14.13□□□□□ -0.15
HMGN1-217ENST00000489072 S100A1P23297 94 aa14.13□□□□□ -0.15
HMGN1-217ENST00000489072 C6orf99Q4VX62 202 aa14.13□□□□□ -0.15
HMGN1-217ENST00000489072 ELOF1P60002 83 aaKnown RBP14.12□□□□□ -0.15
HMGN1-217ENST00000489072 C9orf153Q5TBE3 101 aa14.12□□□□□ -0.15
HMGN1-217ENST00000489072 DHRS4-AS1Q9P1J3 65 aa14.12□□□□□ -0.15
HMGN1-217ENST00000489072 MUC17Q685J3 4493 aa14.12□□□□□ -0.15
HMGN1-217ENST00000489072 COX7BP24311 80 aa14.11□□□□□ -0.15
HMGN1-217ENST00000489072 MUSTN1Q8IVN3 82 aa14.11□□□□□ -0.15
HMGN1-217ENST00000489072 Q6ZVH6 145 aa14.1□□□□□ -0.15
HMGN1-217ENST00000489072 SPRR1BP22528 89 aa14.09□□□□□ -0.15
HMGN1-217ENST00000489072 RPS29P62273 56 aaKnown RBP14.09□□□□□ -0.15
HMGN1-217ENST00000489072 COPS9Q8WXC6 57 aa14.09□□□□□ -0.15
HMGN1-217ENST00000489072 S100A2P29034 98 aa14.08□□□□□ -0.16
HMGN1-217ENST00000489072 SNRPEP62304 92 aaKnown RBP14.08□□□□□ -0.16
HMGN1-217ENST00000489072 Q8N377 158 aa14.08□□□□□ -0.16
HMGN1-217ENST00000489072 KRTAP13-3Q3SY46 172 aa14.05□□□□□ -0.16
HMGN1-217ENST00000489072 A6NDN8 102 aa14.04□□□□□ -0.16
HMGN1-217ENST00000489072 TRBV7-6A0A0J9YX20 115 aa14.03□□□□□ -0.16
HMGN1-217ENST00000489072 SLC25A20O43772 301 aa14□□□□□ -0.17
HMGN1-217ENST00000489072 S100A6P06703 90 aa14□□□□□ -0.17
HMGN1-217ENST00000489072 SLC25A34Q6PIV7 304 aa14□□□□□ -0.17
HMGN1-217ENST00000489072 KRTAP3-3Q9BYR6 98 aa14□□□□□ -0.17
HMGN1-217ENST00000489072 KRTAP3-2Q9BYR7 98 aa14□□□□□ -0.17
HMGN1-217ENST00000489072 A0A1B0GWB2 263 aa13.98□□□□□ -0.17
HMGN1-217ENST00000489072 DEFB105AQ8NG35 78 aa13.98□□□□□ -0.17
HMGN1-217ENST00000489072 LAMTOR3Q9UHA4 124 aa13.98□□□□□ -0.17
HMGN1-217ENST00000489072 HSBP1L1C9JCN9 74 aa13.97□□□□□ -0.17
HMGN1-217ENST00000489072 TAL2Q16559 108 aa13.97□□□□□ -0.17
HMGN1-217ENST00000489072 TRAV13-2A0A0B4J235 113 aa13.96□□□□□ -0.17
HMGN1-217ENST00000489072 Q1RN00 199 aa13.95□□□□□ -0.18
HMGN1-217ENST00000489072 SMIM11BQ8TCY0 68 aa13.95□□□□□ -0.18
HMGN1-217ENST00000489072 A0A0U1RQV1 116 aa13.94□□□□□ -0.18
HMGN1-217ENST00000489072 FAT4Q6V0I7 4981 aa13.94□□□□□ -0.18
HMGN1-217ENST00000489072 TEX49A0A1B0GTD5 131 aa13.93□□□□□ -0.18
HMGN1-217ENST00000489072 LINC01547P58512 204 aaPredicted RBP13.93□□□□□ -0.18
HMGN1-217ENST00000489072 HRCT1Q6UXD1 115 aa13.92□□□□□ -0.18
HMGN1-217ENST00000489072 SMIM29Q86T20 159 aa13.91□□□□□ -0.18
HMGN1-217ENST00000489072 IGLV5-48A0A075B6I7 105 aa13.9□□□□□ -0.18
HMGN1-217ENST00000489072 A4D1N5 150 aa13.89□□□□□ -0.19
HMGN1-217ENST00000489072 SCGB1D1O95968 90 aa13.89□□□□□ -0.19
HMGN1-217ENST00000489072 ASB16-AS1Q495Z4 193 aa13.85□□□□□ -0.19
HMGN1-217ENST00000489072 LIMD2Q9BT23 127 aa13.85□□□□□ -0.19
HMGN1-217ENST00000489072 PRO1933Q9H354 126 aa13.85□□□□□ -0.19
HMGN1-217ENST00000489072 NHP2Q9NX24 153 aaKnown RBP13.83□□□□□ -0.2
HMGN1-217ENST00000489072 CD164Q04900 197 aa13.82□□□□□ -0.2
HMGN1-217ENST00000489072 COX8AP10176 69 aa13.81□□□□□ -0.2
HMGN1-217ENST00000489072 A0A0G2JQZ4 141 aa13.8□□□□□ -0.2
HMGN1-217ENST00000489072 VAMP3Q15836 100 aa13.78□□□□□ -0.2
HMGN1-217ENST00000489072 XP32Q5T750 250 aa13.78□□□□□ -0.2
HMGN1-217ENST00000489072 LCE2AQ5TA79 106 aaPredicted RBP13.78□□□□□ -0.2
HMGN1-217ENST00000489072 LINC00575Q6W349 94 aa13.78□□□□□ -0.2
HMGN1-217ENST00000489072 HIST1H4GQ99525 98 aa13.78□□□□□ -0.2
HMGN1-217ENST00000489072 C12orf57Q99622 126 aa13.78□□□□□ -0.2
HMGN1-217ENST00000489072 H7C2G1 150 aa13.77□□□□□ -0.21
HMGN1-217ENST00000489072 KRTAP4-1Q9BYQ7 146 aa13.76□□□□□ -0.21
HMGN1-217ENST00000489072 SEC61BP60468 96 aaKnown RBP13.75□□□□□ -0.21
HMGN1-217ENST00000489072 DLEU1O43261 78 aa13.74□□□□□ -0.21
HMGN1-217ENST00000489072 Q5XG85 94 aa13.72□□□□□ -0.21
HMGN1-217ENST00000489072 hADV29S1A0JD25 119 aa13.71□□□□□ -0.21
HMGN1-217ENST00000489072 Q6ZQY7 126 aa13.71□□□□□ -0.21
HMGN1-217ENST00000489072 C14orf144Q96I85 54 aa13.71□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 145.1 ms