RNA–Protein interactions for RNA: ENST00000489045.5

COL9A3-213, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 838 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-213ENST00000489045 Q6ZRX8 168 aa13.14□□□□□ -0.31
COL9A3-213ENST00000489045 Q9BRP9 147 aa13.14□□□□□ -0.31
COL9A3-213ENST00000489045 CDIP1Q9H305 208 aa13.14□□□□□ -0.31
COL9A3-213ENST00000489045 TRAV23DV6A0A075B6W5 121 aa13.11□□□□□ -0.31
COL9A3-213ENST00000489045 IGLV9-49A0A0B4J1Y8 123 aa13.09□□□□□ -0.31
COL9A3-213ENST00000489045 LINC01545Q5VT33 79 aa13.09□□□□□ -0.31
COL9A3-213ENST00000489045 A0A0U1RQV1 116 aa13.08□□□□□ -0.32
COL9A3-213ENST00000489045 MOBPQ13875 183 aa13.08□□□□□ -0.32
COL9A3-213ENST00000489045 ZNF73O43830 326 aaPredicted RBP13.07□□□□□ -0.32
COL9A3-213ENST00000489045 PET117Q6UWS5 81 aa13.07□□□□□ -0.32
COL9A3-213ENST00000489045 LITAFQ99732 161 aa13.07□□□□□ -0.32
COL9A3-213ENST00000489045 SPINK1P00995 79 aa13.06□□□□□ -0.32
COL9A3-213ENST00000489045 JOSD1Q15040 202 aaPredicted RBP13.06□□□□□ -0.32
COL9A3-213ENST00000489045 FP248Q71RG6 208 aaPredicted RBP13.06□□□□□ -0.32
COL9A3-213ENST00000489045 LINC00308Q8TCZ7 52 aa13.05□□□□□ -0.32
COL9A3-213ENST00000489045 MUC17Q685J3 4493 aa13.05□□□□□ -0.32
COL9A3-213ENST00000489045 TIMM17BO60830 172 aa13.03□□□□□ -0.32
COL9A3-213ENST00000489045 SSBP3-AS1Q7Z2R9 100 aa13.03□□□□□ -0.32
COL9A3-213ENST00000489045 SPANXCQ9NY87 97 aa13.03□□□□□ -0.32
COL9A3-213ENST00000489045 ZNF815PA8K554 130 aa13.02□□□□□ -0.33
COL9A3-213ENST00000489045 C3orf79P0CE67 100 aa13.02□□□□□ -0.33
COL9A3-213ENST00000489045 TTTY13Q9BZ97 58 aa13.02□□□□□ -0.33
COL9A3-213ENST00000489045 CBY1Q9Y3M2 126 aa13.01□□□□□ -0.33
COL9A3-213ENST00000489045 OR13C6PQ8NH95 151 aa13□□□□□ -0.33
COL9A3-213ENST00000489045 ST20-AS1Q8NBB2 130 aa12.99□□□□□ -0.33
COL9A3-213ENST00000489045 HINT1P49773 126 aaPredicted RBP12.98□□□□□ -0.33
COL9A3-213ENST00000489045 KRTDAPP60985 99 aa12.97□□□□□ -0.33
COL9A3-213ENST00000489045 C9orf153Q5TBE3 101 aa12.97□□□□□ -0.33
COL9A3-213ENST00000489045 RPS29P62273 56 aaKnown RBP12.96□□□□□ -0.33
COL9A3-213ENST00000489045 KRTAP13-3Q3SY46 172 aa12.96□□□□□ -0.33
COL9A3-213ENST00000489045 COA6Q5JTJ3 125 aaKnown RBP12.96□□□□□ -0.33
COL9A3-213ENST00000489045 Q8N377 158 aa12.95□□□□□ -0.34
COL9A3-213ENST00000489045 SPANXDQ9BXN6 97 aa12.94□□□□□ -0.34
COL9A3-213ENST00000489045 C5orf52A6NGY3 159 aa12.93□□□□□ -0.34
COL9A3-213ENST00000489045 SLC25A20O43772 301 aa12.9□□□□□ -0.34
COL9A3-213ENST00000489045 LINC00518Q8N0U6 118 aa12.9□□□□□ -0.34
COL9A3-213ENST00000489045 DHRS4-AS1Q9P1J3 65 aa12.9□□□□□ -0.34
COL9A3-213ENST00000489045 FAT4Q6V0I7 4981 aa12.9□□□□□ -0.34
COL9A3-213ENST00000489045 C20orf202A1L168 122 aa12.89□□□□□ -0.35
COL9A3-213ENST00000489045 SCGB1D4Q6XE38 83 aa12.89□□□□□ -0.35
COL9A3-213ENST00000489045 ANKRD39Q53RE8 183 aa12.88□□□□□ -0.35
COL9A3-213ENST00000489045 SPRR1BP22528 89 aa12.87□□□□□ -0.35
COL9A3-213ENST00000489045 ELOF1P60002 83 aaKnown RBP12.87□□□□□ -0.35
COL9A3-213ENST00000489045 COX7BP24311 80 aa12.86□□□□□ -0.35
COL9A3-213ENST00000489045 C6orf99Q4VX62 202 aa12.86□□□□□ -0.35
COL9A3-213ENST00000489045 ATOH7Q8N100 152 aa12.86□□□□□ -0.35
COL9A3-213ENST00000489045 LCE2AQ5TA79 106 aaPredicted RBP12.85□□□□□ -0.35
COL9A3-213ENST00000489045 SLC25A34Q6PIV7 304 aa12.83□□□□□ -0.36
COL9A3-213ENST00000489045 ASB16-AS1Q495Z4 193 aa12.82□□□□□ -0.36
COL9A3-213ENST00000489045 COPS9Q8WXC6 57 aa12.82□□□□□ -0.36
COL9A3-213ENST00000489045 IFITM1P13164 125 aa12.8□□□□□ -0.36
COL9A3-213ENST00000489045 PCP2Q8IVA1 136 aa12.8□□□□□ -0.36
COL9A3-213ENST00000489045 LAMTOR3Q9UHA4 124 aa12.8□□□□□ -0.36
COL9A3-213ENST00000489045 Q6ZVH6 145 aa12.78□□□□□ -0.36
COL9A3-213ENST00000489045 AKR1D1P51857 326 aa12.77□□□□□ -0.37
COL9A3-213ENST00000489045 HRCT1Q6UXD1 115 aa12.77□□□□□ -0.37
COL9A3-213ENST00000489045 MUSTN1Q8IVN3 82 aa12.77□□□□□ -0.37
COL9A3-213ENST00000489045 TRBV7-6A0A0J9YX20 115 aa12.76□□□□□ -0.37
COL9A3-213ENST00000489045 A6NDN8 102 aa12.76□□□□□ -0.37
COL9A3-213ENST00000489045 TAL2Q16559 108 aa12.76□□□□□ -0.37
COL9A3-213ENST00000489045 DEFB105AQ8NG35 78 aa12.76□□□□□ -0.37
COL9A3-213ENST00000489045 SEC61BP60468 96 aaKnown RBP12.75□□□□□ -0.37
COL9A3-213ENST00000489045 Q1RN00 199 aa12.75□□□□□ -0.37
COL9A3-213ENST00000489045 LIMD2Q9BT23 127 aa12.74□□□□□ -0.37
COL9A3-213ENST00000489045 A0A1B0GWB2 263 aa12.73□□□□□ -0.37
COL9A3-213ENST00000489045 TEX49A0A1B0GTD5 131 aa12.72□□□□□ -0.37
COL9A3-213ENST00000489045 XP32Q5T750 250 aa12.71□□□□□ -0.37
COL9A3-213ENST00000489045 KRTAP4-1Q9BYQ7 146 aa12.71□□□□□ -0.37
COL9A3-213ENST00000489045 SNRPEP62304 92 aaKnown RBP12.7□□□□□ -0.38
COL9A3-213ENST00000489045 SMIM29Q86T20 159 aa12.68□□□□□ -0.38
COL9A3-213ENST00000489045 HIST3H2BBQ8N257 126 aa12.68□□□□□ -0.38
COL9A3-213ENST00000489045 PRO1933Q9H354 126 aa12.68□□□□□ -0.38
COL9A3-213ENST00000489045 TRAV13-2A0A0B4J235 113 aa12.67□□□□□ -0.38
COL9A3-213ENST00000489045 LINC01547P58512 204 aaPredicted RBP12.67□□□□□ -0.38
COL9A3-213ENST00000489045 HIST1H2BLQ99880 126 aa12.67□□□□□ -0.38
COL9A3-213ENST00000489045 IGLV5-48A0A075B6I7 105 aa12.66□□□□□ -0.38
COL9A3-213ENST00000489045 CD164Q04900 197 aa12.66□□□□□ -0.38
COL9A3-213ENST00000489045 SMIM11BQ8TCY0 68 aa12.66□□□□□ -0.38
COL9A3-213ENST00000489045 S100A2P29034 98 aa12.65□□□□□ -0.38
COL9A3-213ENST00000489045 A4D1N5 150 aa12.64□□□□□ -0.39
COL9A3-213ENST00000489045 KRTAP9-2Q9BYQ4 174 aa12.63□□□□□ -0.39
COL9A3-213ENST00000489045 H7C2G1 150 aa12.62□□□□□ -0.39
COL9A3-213ENST00000489045 NHP2Q9NX24 153 aaKnown RBP12.62□□□□□ -0.39
COL9A3-213ENST00000489045 HSBP1L1C9JCN9 74 aa12.6□□□□□ -0.39
COL9A3-213ENST00000489045 A0A0G2JQZ4 141 aa12.59□□□□□ -0.39
COL9A3-213ENST00000489045 C9orf92A6NGG3 77 aa12.59□□□□□ -0.39
COL9A3-213ENST00000489045 Q5XG85 94 aa12.56□□□□□ -0.4
COL9A3-213ENST00000489045 S100A6P06703 90 aa12.55□□□□□ -0.4
COL9A3-213ENST00000489045 S100A1P23297 94 aa12.54□□□□□ -0.4
COL9A3-213ENST00000489045 VAMP3Q15836 100 aa12.54□□□□□ -0.4
COL9A3-213ENST00000489045 C1orf195Q5TG92 126 aa12.52□□□□□ -0.41
COL9A3-213ENST00000489045 LINC00575Q6W349 94 aa12.52□□□□□ -0.41
COL9A3-213ENST00000489045 PCOTHQ58A44 107 aa12.49□□□□□ -0.41
COL9A3-213ENST00000489045 F8WEM9 126 aa12.48□□□□□ -0.41
COL9A3-213ENST00000489045 Q6ZQY7 126 aa12.48□□□□□ -0.41
COL9A3-213ENST00000489045 hADV29S1A0JD25 119 aa12.47□□□□□ -0.41
COL9A3-213ENST00000489045 SCGB1D1O95968 90 aa12.47□□□□□ -0.41
COL9A3-213ENST00000489045 C12orf57Q99622 126 aa12.46□□□□□ -0.41
COL9A3-213ENST00000489045 HIST1H4GQ99525 98 aa12.44□□□□□ -0.42
COL9A3-213ENST00000489045 IGLV8-61A0A075B6I0 122 aa12.43□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 56.5 ms