RNA–Protein interactions for RNA: ENST00000488520.5

USP4-213, Transcript of ubiquitin specific peptidase 4, human

TSL 3

Gene USP4, Length 1,155 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USP4-213	ENST00000488520	DLEU1	O43261	78 aa		5.42	□□□□□ -1.54
USP4-213	ENST00000488520	ADAMTSL4-AS1	Q5T5F5	129 aa		5.42	□□□□□ -1.54
USP4-213	ENST00000488520	MRPL55	Q7Z7F7	128 aa	Known RBP	5.42	□□□□□ -1.54
USP4-213	ENST00000488520	LINC00518	Q8N0U6	118 aa		5.42	□□□□□ -1.54
USP4-213	ENST00000488520	HIST1H4G	Q99525	98 aa		5.42	□□□□□ -1.54
USP4-213	ENST00000488520	TP73-AS1	Q9UF72	201 aa		5.42	□□□□□ -1.54
USP4-213	ENST00000488520	S100A7L2	Q5SY68	101 aa		5.41	□□□□□ -1.54
USP4-213	ENST00000488520	LINC00308	Q8TCZ7	52 aa		5.41	□□□□□ -1.54
USP4-213	ENST00000488520	LINC01600	Q96MT4	127 aa		5.41	□□□□□ -1.54
USP4-213	ENST00000488520	SPANXD	Q9BXN6	97 aa		5.41	□□□□□ -1.54
USP4-213	ENST00000488520	KRTAP9-8	Q9BYQ0	159 aa		5.41	□□□□□ -1.54
USP4-213	ENST00000488520	SPANXC	Q9NY87	97 aa		5.41	□□□□□ -1.54
USP4-213	ENST00000488520	CBY1	Q9Y3M2	126 aa		5.41	□□□□□ -1.54
USP4-213	ENST00000488520	LOC107984156	A0A0G2JMH3	177 aa		5.4	□□□□□ -1.54
USP4-213	ENST00000488520	GAGE10	A6NGK3	116 aa		5.4	□□□□□ -1.54
USP4-213	ENST00000488520	RPL37AP8	A6NKH3	93 aa		5.4	□□□□□ -1.54
USP4-213	ENST00000488520	NDUFC2	O95298	119 aa		5.4	□□□□□ -1.54
USP4-213	ENST00000488520	MUSTN1	Q8IVN3	82 aa		5.4	□□□□□ -1.54
USP4-213	ENST00000488520	ARL17A	Q8IVW1	177 aa		5.4	□□□□□ -1.54
USP4-213	ENST00000488520	OR13C6P	Q8NH95	151 aa		5.4	□□□□□ -1.54
USP4-213	ENST00000488520	LINC00167	Q96N53	147 aa		5.4	□□□□□ -1.54
USP4-213	ENST00000488520	LPA	P08519	4548 aa		5.39	□□□□□ -1.55
USP4-213	ENST00000488520	IGLV5-37	A0A075B6J1	123 aa		5.39	□□□□□ -1.55
USP4-213	ENST00000488520	LOC105371267	A0A1B0GV96	52 aa		5.39	□□□□□ -1.55
USP4-213	ENST00000488520	NCR3	O14931	201 aa		5.39	□□□□□ -1.55
USP4-213	ENST00000488520	SMIM6	P0DI80	62 aa		5.39	□□□□□ -1.55
USP4-213	ENST00000488520	VPREB1	P12018	145 aa		5.39	□□□□□ -1.55
USP4-213	ENST00000488520	SPANXB1	Q9NS25	103 aa	Predicted RBP	5.39	□□□□□ -1.55
USP4-213	ENST00000488520	UQCR10	Q9UDW1	63 aa		5.39	□□□□□ -1.55
USP4-213	ENST00000488520	TRBV10-2	A0A0K0K1G8	114 aa		5.38	□□□□□ -1.55
USP4-213	ENST00000488520	HINT1	P49773	126 aa	Predicted RBP	5.38	□□□□□ -1.55
USP4-213	ENST00000488520	PRR3	P79522	188 aa	Known RBP	5.38	□□□□□ -1.55
USP4-213	ENST00000488520	C1orf137	Q5JT78	98 aa		5.38	□□□□□ -1.55
USP4-213	ENST00000488520	LITAF	Q99732	161 aa		5.38	□□□□□ -1.55
USP4-213	ENST00000488520	HIGD1B	Q9P298	99 aa		5.38	□□□□□ -1.55
USP4-213	ENST00000488520	IGKV2-28	A0A075B6P5	120 aa		5.37	□□□□□ -1.55
USP4-213	ENST00000488520	IGKV2D-28	P01615	120 aa		5.37	□□□□□ -1.55
USP4-213	ENST00000488520	DDT	P30046	118 aa		5.37	□□□□□ -1.55
USP4-213	ENST00000488520	IGLV1-50	A0A075B6I6	118 aa		5.36	□□□□□ -1.55
USP4-213	ENST00000488520	TRAV13-2	A0A0B4J235	113 aa		5.36	□□□□□ -1.55
USP4-213	ENST00000488520		A6NDN8	102 aa		5.36	□□□□□ -1.55
USP4-213	ENST00000488520	KRTAP10-8	P60410	259 aa		5.36	□□□□□ -1.55
USP4-213	ENST00000488520	KRTAP7-1	Q8IUC3	87 aa		5.36	□□□□□ -1.55
USP4-213	ENST00000488520	C12orf57	Q99622	126 aa		5.36	□□□□□ -1.55
USP4-213	ENST00000488520	TMEM126A	Q9H061	195 aa		5.36	□□□□□ -1.55
USP4-213	ENST00000488520	PPDPF	Q9H3Y8	114 aa		5.36	□□□□□ -1.55
USP4-213	ENST00000488520	PSORS1C2	Q9UIG4	136 aa		5.36	□□□□□ -1.55
USP4-213	ENST00000488520	TSTD3	H0UI37	97 aa		5.35	□□□□□ -1.55
USP4-213	ENST00000488520	UBE2A	P49459	152 aa		5.35	□□□□□ -1.55
USP4-213	ENST00000488520	TAL2	Q16559	108 aa		5.35	□□□□□ -1.55
USP4-213	ENST00000488520	REG3G	Q6UW15	175 aa		5.35	□□□□□ -1.55
USP4-213	ENST00000488520	SOSTDC1	Q6X4U4	206 aa		5.35	□□□□□ -1.55
USP4-213	ENST00000488520	PRO1933	Q9H354	126 aa		5.35	□□□□□ -1.55
USP4-213	ENST00000488520	RAB37	Q96AX2	223 aa		5.34	□□□□□ -1.55
USP4-213	ENST00000488520	TRBV10-3	A0A0K0K1G6	114 aa		5.33	□□□□□ -1.56
USP4-213	ENST00000488520	ETDC	A0A1B0GVM5	59 aa		5.33	□□□□□ -1.56
USP4-213	ENST00000488520		A4D1N5	150 aa		5.33	□□□□□ -1.56
USP4-213	ENST00000488520	PRY	O14603	147 aa		5.33	□□□□□ -1.56
USP4-213	ENST00000488520	BCE1	O60756	84 aa		5.33	□□□□□ -1.56
USP4-213	ENST00000488520	RPL28	P46779	137 aa	Known RBP	5.33	□□□□□ -1.56
USP4-213	ENST00000488520	SPINK6	Q6UWN8	80 aa		5.33	□□□□□ -1.56
USP4-213	ENST00000488520	FAM19A1	Q7Z5A9	133 aa		5.33	□□□□□ -1.56
USP4-213	ENST00000488520	CEND1	Q8N111	149 aa		5.33	□□□□□ -1.56
USP4-213	ENST00000488520	TRAV23DV6	A0A075B6W5	121 aa		5.32	□□□□□ -1.56
USP4-213	ENST00000488520	IGLV7-43	P04211	117 aa		5.32	□□□□□ -1.56
USP4-213	ENST00000488520	HSD52	Q0P140	79 aa		5.32	□□□□□ -1.56
USP4-213	ENST00000488520	VAMP3	Q15836	100 aa		5.32	□□□□□ -1.56
USP4-213	ENST00000488520		Q8NDZ9	215 aa		5.32	□□□□□ -1.56
USP4-213	ENST00000488520	KCNQ1DN	Q9H478	68 aa		5.32	□□□□□ -1.56
USP4-213	ENST00000488520	IGLV6-57	P01721	117 aa		5.31	□□□□□ -1.56
USP4-213	ENST00000488520	C2orf91	Q6ZV80	131 aa		5.31	□□□□□ -1.56
USP4-213	ENST00000488520	ZNF861P	O60384	105 aa		5.3	□□□□□ -1.56
USP4-213	ENST00000488520	DIRC1	Q969H9	104 aa		5.3	□□□□□ -1.56
USP4-213	ENST00000488520	ZNF73	O43830	326 aa	Predicted RBP	5.29	□□□□□ -1.56
USP4-213	ENST00000488520	SNCG	O76070	127 aa		5.29	□□□□□ -1.56
USP4-213	ENST00000488520		Q1RN00	199 aa		5.29	□□□□□ -1.56
USP4-213	ENST00000488520	KRTAP11-1	Q8IUC1	163 aa		5.29	□□□□□ -1.56
USP4-213	ENST00000488520	LINC00337	Q8N6G1	96 aa		5.29	□□□□□ -1.56
USP4-213	ENST00000488520		H7C2G1	150 aa		5.28	□□□□□ -1.56
USP4-213	ENST00000488520		M0R143	59 aa		5.28	□□□□□ -1.56
USP4-213	ENST00000488520	CFC1B	P0CG36	223 aa		5.28	□□□□□ -1.56
USP4-213	ENST00000488520	CFC1	P0CG37	223 aa		5.28	□□□□□ -1.56
USP4-213	ENST00000488520	CTAG1A	P78358	180 aa		5.28	□□□□□ -1.56
USP4-213	ENST00000488520	HIGD2A	Q9BW72	106 aa		5.28	□□□□□ -1.56
USP4-213	ENST00000488520	PRO1854	Q9UHT4	67 aa		5.28	□□□□□ -1.56
USP4-213	ENST00000488520	SLC25A20	O43772	301 aa		5.27	□□□□□ -1.57
USP4-213	ENST00000488520	COX7B	P24311	80 aa		5.27	□□□□□ -1.57
USP4-213	ENST00000488520	RPL13A	P40429	203 aa	Known RBP	5.27	□□□□□ -1.57
USP4-213	ENST00000488520	NHP2	Q9NX24	153 aa	Known RBP	5.27	□□□□□ -1.57
USP4-213	ENST00000488520		A0A0B4J2C4	111 aa		5.26	□□□□□ -1.57
USP4-213	ENST00000488520	TRBV7-6	A0A0J9YX20	115 aa		5.26	□□□□□ -1.57
USP4-213	ENST00000488520		H0Y9J4	135 aa		5.26	□□□□□ -1.57
USP4-213	ENST00000488520	PRLH	P81277	87 aa		5.26	□□□□□ -1.57
USP4-213	ENST00000488520	C6orf99	Q4VX62	202 aa		5.26	□□□□□ -1.57
USP4-213	ENST00000488520	BVES-AS1	Q5T3Y7	98 aa		5.26	□□□□□ -1.57
USP4-213	ENST00000488520		Q8N9P0	234 aa	Predicted RBP	5.26	□□□□□ -1.57
USP4-213	ENST00000488520	SMIM11B	Q8TCY0	68 aa		5.26	□□□□□ -1.57
USP4-213	ENST00000488520		A0A1B0GWB2	263 aa		5.25	□□□□□ -1.57
USP4-213	ENST00000488520	SPRR1A	P35321	89 aa		5.25	□□□□□ -1.57
USP4-213	ENST00000488520	PSMB2	P49721	201 aa		5.25	□□□□□ -1.57

Retrieved 100 of 20,778 RNA–protein pairs in 82.5 ms