RNA–Protein interactions for RNA: ENST00000487017.5

COL7A1-210, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 5,807 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-210ENST00000487017 LINC01600Q96MT4 127 aa10.84□□□□□ -0.67
COL7A1-210ENST00000487017 F8P00451 2351 aa10.82□□□□□ -0.68
COL7A1-210ENST00000487017 PRR15Q8IV56 129 aa10.8□□□□□ -0.68
COL7A1-210ENST00000487017 CYP4F30PQ9H0H9 118 aa10.79□□□□□ -0.68
COL7A1-210ENST00000487017 H7BZZ5 65 aa10.79□□□□□ -0.68
COL7A1-210ENST00000487017 APLNQ9ULZ1 77 aa10.79□□□□□ -0.68
COL7A1-210ENST00000487017 J3QL48 77 aa10.78□□□□□ -0.68
COL7A1-210ENST00000487017 CD164Q04900 197 aa10.78□□□□□ -0.68
COL7A1-210ENST00000487017 PLA2G2DQ9UNK4 145 aa10.78□□□□□ -0.68
COL7A1-210ENST00000487017 TLX1NBP0CAT3 122 aa10.78□□□□□ -0.68
COL7A1-210ENST00000487017 DSCR10P59022 87 aa10.78□□□□□ -0.68
COL7A1-210ENST00000487017 KRTAP10-11P60412 298 aa10.78□□□□□ -0.68
COL7A1-210ENST00000487017 COX6B2Q6YFQ2 88 aa10.76□□□□□ -0.69
COL7A1-210ENST00000487017 ZNF575Q86XF7 245 aa10.76□□□□□ -0.69
COL7A1-210ENST00000487017 C8orf17Q9NRJ1 99 aa10.76□□□□□ -0.69
COL7A1-210ENST00000487017 KRTAP10-3P60369 221 aa10.76□□□□□ -0.69
COL7A1-210ENST00000487017 ACANP16112 2415 aa10.75□□□□□ -0.69
COL7A1-210ENST00000487017 C9orf92A6NGG3 77 aa10.73□□□□□ -0.69
COL7A1-210ENST00000487017 DNAH12Q6ZR08 3092 aa10.72□□□□□ -0.69
COL7A1-210ENST00000487017 A0A0G2JQZ4 141 aa10.72□□□□□ -0.69
COL7A1-210ENST00000487017 A0A1W2PNN7 141 aa10.72□□□□□ -0.69
COL7A1-210ENST00000487017 A0A1B0GVX0 72 aa10.7□□□□□ -0.7
COL7A1-210ENST00000487017 OBSCN-AS1Q96MR7 158 aa10.7□□□□□ -0.7
COL7A1-210ENST00000487017 WWC2-AS2Q96NR7 200 aa10.69□□□□□ -0.7
COL7A1-210ENST00000487017 UQCR11O14957 56 aa10.69□□□□□ -0.7
COL7A1-210ENST00000487017 K7EIL1 84 aa10.69□□□□□ -0.7
COL7A1-210ENST00000487017 KTN1-AS1Q86SY8 53 aa10.67□□□□□ -0.7
COL7A1-210ENST00000487017 A0A1W2PNM2 257 aa10.66□□□□□ -0.7
COL7A1-210ENST00000487017 ZNF861PO60384 105 aa10.66□□□□□ -0.7
COL7A1-210ENST00000487017 CRIPTQ9P021 101 aa10.66□□□□□ -0.7
COL7A1-210ENST00000487017 ANAPC11Q9NYG5 84 aa10.64□□□□□ -0.71
COL7A1-210ENST00000487017 MIR22HGQ0VDD5 57 aa10.64□□□□□ -0.71
COL7A1-210ENST00000487017 C9orf163Q8N9P6 203 aa10.64□□□□□ -0.71
COL7A1-210ENST00000487017 LINC00304Q8N9R0 145 aa10.63□□□□□ -0.71
COL7A1-210ENST00000487017 SMR3BP02814 79 aaPredicted RBP10.62□□□□□ -0.71
COL7A1-210ENST00000487017 IGLV5-48A0A075B6I7 105 aa10.6□□□□□ -0.71
COL7A1-210ENST00000487017 FAM104AQ969W3 186 aa10.6□□□□□ -0.71
COL7A1-210ENST00000487017 CASC10Q5T4H9 136 aa10.6□□□□□ -0.71
COL7A1-210ENST00000487017 LCA10Q71F78 164 aa10.6□□□□□ -0.71
COL7A1-210ENST00000487017 A0A087WTM6 91 aa10.59□□□□□ -0.71
COL7A1-210ENST00000487017 KRTAP1-3Q8IUG1 177 aa10.59□□□□□ -0.71
COL7A1-210ENST00000487017 LINC01554Q52M75 96 aa10.57□□□□□ -0.72
COL7A1-210ENST00000487017 CNBPP62633 177 aaKnown RBP10.57□□□□□ -0.72
COL7A1-210ENST00000487017 PRRC2CQ9Y520 2896 aaKnown RBP10.57□□□□□ -0.72
COL7A1-210ENST00000487017 IGLV5-37A0A075B6J1 123 aa10.57□□□□□ -0.72
COL7A1-210ENST00000487017 SPANXA2-OT1Q8N9U9 137 aa10.57□□□□□ -0.72
COL7A1-210ENST00000487017 SPRR4Q96PI1 79 aa10.55□□□□□ -0.72
COL7A1-210ENST00000487017 A0A0D9SG42 100 aa10.55□□□□□ -0.72
COL7A1-210ENST00000487017 FASNP49327 2511 aaKnown RBP10.53□□□□□ -0.72
COL7A1-210ENST00000487017 OCR1Q9BZK8 76 aa10.51□□□□□ -0.73
COL7A1-210ENST00000487017 KRTAP1-1Q07627 177 aa10.51□□□□□ -0.73
COL7A1-210ENST00000487017 WIPF1O43516 503 aa10.51□□□□□ -0.73
COL7A1-210ENST00000487017 IGLV7-43P04211 117 aa10.51□□□□□ -0.73
COL7A1-210ENST00000487017 PSORS1C2Q9UIG4 136 aa10.51□□□□□ -0.73
COL7A1-210ENST00000487017 Q8N1X5 172 aa10.49□□□□□ -0.73
COL7A1-210ENST00000487017 CEP350Q5VT06 3117 aa10.46□□□□□ -0.73
COL7A1-210ENST00000487017 RBM12B-AS1Q9P1G2 102 aa10.42□□□□□ -0.74
COL7A1-210ENST00000487017 CDC42SE1Q9NRR8 79 aa10.42□□□□□ -0.74
COL7A1-210ENST00000487017 Q1T7F1 81 aa10.4□□□□□ -0.74
COL7A1-210ENST00000487017 EPG5Q9HCE0 2579 aa10.39□□□□□ -0.75
COL7A1-210ENST00000487017 BPTFQ12830 3046 aa10.37□□□□□ -0.75
COL7A1-210ENST00000487017 UTRNP46939 3433 aa10.35□□□□□ -0.75
COL7A1-210ENST00000487017 Q8NDZ9 215 aa10.32□□□□□ -0.76
COL7A1-210ENST00000487017 Q5XG85 94 aa10.31□□□□□ -0.76
COL7A1-210ENST00000487017 CHD7Q9P2D1 2997 aa10.31□□□□□ -0.76
COL7A1-210ENST00000487017 IGLV7-46A0A075B6I9 117 aa10.3□□□□□ -0.76
COL7A1-210ENST00000487017 CR1P17927 2039 aa10.3□□□□□ -0.76
COL7A1-210ENST00000487017 PRR26Q8N8Z3 221 aa10.29□□□□□ -0.76
COL7A1-210ENST00000487017 C5orf42Q9H799 3197 aa10.27□□□□□ -0.76
COL7A1-210ENST00000487017 CYSTM1Q9H1C7 97 aa10.25□□□□□ -0.77
COL7A1-210ENST00000487017 SPRR1AP35321 89 aa10.25□□□□□ -0.77
COL7A1-210ENST00000487017 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP10.24□□□□□ -0.77
COL7A1-210ENST00000487017 USP24Q9UPU5 2620 aa10.23□□□□□ -0.77
COL7A1-210ENST00000487017 HECTD1Q9ULT8 2610 aa10.23□□□□□ -0.77
COL7A1-210ENST00000487017 H3BS24 57 aa10.23□□□□□ -0.77
COL7A1-210ENST00000487017 FAM229BQ4G0N7 80 aa10.22□□□□□ -0.77
COL7A1-210ENST00000487017 LUZP6Q538Z0 58 aa10.22□□□□□ -0.77
COL7A1-210ENST00000487017 MMP24-AS1A0A0U1RRL7 71 aa10.21□□□□□ -0.77
COL7A1-210ENST00000487017 Q75L30 129 aa10.21□□□□□ -0.77
COL7A1-210ENST00000487017 Q6ZSA8 131 aa10.2□□□□□ -0.78
COL7A1-210ENST00000487017 FLNAP21333 2647 aaKnown RBP10.2□□□□□ -0.78
COL7A1-210ENST00000487017 PCNTO95613 3336 aa10.2□□□□□ -0.78
COL7A1-210ENST00000487017 HRES1P13985 223 aa10.19□□□□□ -0.78
COL7A1-210ENST00000487017 FP248Q71RG6 208 aaPredicted RBP10.19□□□□□ -0.78
COL7A1-210ENST00000487017 CAMK2N1Q7Z7J9 78 aa10.18□□□□□ -0.78
COL7A1-210ENST00000487017 TNP2Q05952 138 aa10.17□□□□□ -0.78
COL7A1-210ENST00000487017 MGAM2Q2M2H8 2515 aa10.17□□□□□ -0.78
COL7A1-210ENST00000487017 Q8N9P0 234 aaPredicted RBP10.15□□□□□ -0.78
COL7A1-210ENST00000487017 LINC01558Q9Y6Z2 57 aa10.14□□□□□ -0.79
COL7A1-210ENST00000487017 CHD9Q3L8U1 2897 aa10.13□□□□□ -0.79
COL7A1-210ENST00000487017 PRAC1Q96KF2 57 aa10.13□□□□□ -0.79
COL7A1-210ENST00000487017 M0R2T5 61 aa10.12□□□□□ -0.79
COL7A1-210ENST00000487017 A0A1B0GU33 70 aa10.12□□□□□ -0.79
COL7A1-210ENST00000487017 SPRR1BP22528 89 aa10.11□□□□□ -0.79
COL7A1-210ENST00000487017 ITPR3Q14573 2671 aa10.11□□□□□ -0.79
COL7A1-210ENST00000487017 LINC00472Q9H8W2 130 aa10.1□□□□□ -0.79
COL7A1-210ENST00000487017 PLAC8Q9NZF1 115 aa10.1□□□□□ -0.79
COL7A1-210ENST00000487017 FLNBO75369 2602 aaKnown RBP10.08□□□□□ -0.8
COL7A1-210ENST00000487017 KRTAP26-1Q6PEX3 210 aa10.06□□□□□ -0.8
COL7A1-210ENST00000487017 ATRQ13535 2644 aa10.04□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 105.1 ms