RNA–Protein interactions for RNA: ENST00000485792.1

CUX1-208, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 564 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-208ENST00000485792 NDUFC2O95298 119 aa3.38□□□□□ -1.87
CUX1-208ENST00000485792 ADAMTSL4-AS1Q5T5F5 129 aa3.38□□□□□ -1.87
CUX1-208ENST00000485792 MIR7-3HGQ8N6C7 128 aa3.38□□□□□ -1.87
CUX1-208ENST00000485792 TMEM126AQ9H061 195 aa3.38□□□□□ -1.87
CUX1-208ENST00000485792 PPDPFQ9H3Y8 114 aa3.38□□□□□ -1.87
CUX1-208ENST00000485792 MUC2Q02817 5179 aa3.38□□□□□ -1.87
CUX1-208ENST00000485792 GAGE10A6NGK3 116 aa3.37□□□□□ -1.87
CUX1-208ENST00000485792 TMEM238C9JI98 176 aa3.37□□□□□ -1.87
CUX1-208ENST00000485792 TIMM17BO60830 172 aa3.37□□□□□ -1.87
CUX1-208ENST00000485792 RPL28P46779 137 aaKnown RBP3.37□□□□□ -1.87
CUX1-208ENST00000485792 LINC00158P58513 81 aa3.37□□□□□ -1.87
CUX1-208ENST00000485792 KRTAP13-2Q52LG2 175 aa3.37□□□□□ -1.87
CUX1-208ENST00000485792 LINC00337Q8N6G1 96 aa3.37□□□□□ -1.87
CUX1-208ENST00000485792 PRR26Q8N8Z3 221 aa3.37□□□□□ -1.87
CUX1-208ENST00000485792 NKAPP1Q8N9T2 125 aa3.37□□□□□ -1.87
CUX1-208ENST00000485792 IGKV2-28A0A075B6P5 120 aa3.36□□□□□ -1.87
CUX1-208ENST00000485792 H0Y8G0 127 aa3.36□□□□□ -1.87
CUX1-208ENST00000485792 IGKV2D-28P01615 120 aa3.36□□□□□ -1.87
CUX1-208ENST00000485792 IGLV6-57P01721 117 aa3.36□□□□□ -1.87
CUX1-208ENST00000485792 HERVK_113P61574 105 aa3.36□□□□□ -1.87
CUX1-208ENST00000485792 CTAG1AP78358 180 aa3.36□□□□□ -1.87
CUX1-208ENST00000485792 FAM229BQ4G0N7 80 aa3.36□□□□□ -1.87
CUX1-208ENST00000485792 MEIG1Q5JSS6 88 aa3.36□□□□□ -1.87
CUX1-208ENST00000485792 BOD1L2Q8IYS8 172 aa3.36□□□□□ -1.87
CUX1-208ENST00000485792 HIST3H2BBQ8N257 126 aa3.36□□□□□ -1.87
CUX1-208ENST00000485792 DAND5Q8N907 189 aa3.36□□□□□ -1.87
CUX1-208ENST00000485792 ANAPC11Q9NYG5 84 aa3.36□□□□□ -1.87
CUX1-208ENST00000485792 A0A0U1RRA0 63 aa3.35□□□□□ -1.87
CUX1-208ENST00000485792 RPL13AP40429 203 aaKnown RBP3.35□□□□□ -1.87
CUX1-208ENST00000485792 HIST1H2BLQ99880 126 aa3.35□□□□□ -1.87
CUX1-208ENST00000485792 A0A0A0MQY5 61 aa3.34□□□□□ -1.87
CUX1-208ENST00000485792 TRBV10-3A0A0K0K1G6 114 aa3.34□□□□□ -1.87
CUX1-208ENST00000485792 C5orf52A6NGY3 159 aa3.34□□□□□ -1.87
CUX1-208ENST00000485792 LGALS3P17931 250 aaKnown RBP3.34□□□□□ -1.87
CUX1-208ENST00000485792 AKR1D1P51857 326 aa3.34□□□□□ -1.87
CUX1-208ENST00000485792 PRLHP81277 87 aa3.34□□□□□ -1.87
CUX1-208ENST00000485792 LINC00308Q8TCZ7 52 aa3.34□□□□□ -1.87
CUX1-208ENST00000485792 KRTAP9-8Q9BYQ0 159 aa3.34□□□□□ -1.87
CUX1-208ENST00000485792 SPANXB1Q9NS25 103 aaPredicted RBP3.34□□□□□ -1.87
CUX1-208ENST00000485792 SNRPEP62304 92 aaKnown RBP3.33□□□□□ -1.88
CUX1-208ENST00000485792 LINC00483Q53H64 154 aa3.33□□□□□ -1.88
CUX1-208ENST00000485792 SMCR5Q8TEV8 140 aa3.33□□□□□ -1.88
CUX1-208ENST00000485792 SPANXDQ9BXN6 97 aa3.33□□□□□ -1.88
CUX1-208ENST00000485792 SPANXCQ9NY87 97 aa3.33□□□□□ -1.88
CUX1-208ENST00000485792 FAT4Q6V0I7 4981 aa3.32□□□□□ -1.88
CUX1-208ENST00000485792 NCR3O14931 201 aa3.32□□□□□ -1.88
CUX1-208ENST00000485792 ERC2-IT1O76042 136 aa3.32□□□□□ -1.88
CUX1-208ENST00000485792 CRYGAP11844 174 aa3.32□□□□□ -1.88
CUX1-208ENST00000485792 KRTDAPP60985 99 aa3.32□□□□□ -1.88
CUX1-208ENST00000485792 Q6ZVH6 145 aa3.32□□□□□ -1.88
CUX1-208ENST00000485792 FAM19A1Q7Z5A9 133 aa3.32□□□□□ -1.88
CUX1-208ENST00000485792 SPRR4Q96PI1 79 aa3.32□□□□□ -1.88
CUX1-208ENST00000485792 Q9BRP9 147 aa3.32□□□□□ -1.88
CUX1-208ENST00000485792 ZNF815PA8K554 130 aa3.31□□□□□ -1.88
CUX1-208ENST00000485792 DDTP30046 118 aa3.31□□□□□ -1.88
CUX1-208ENST00000485792 UBE2AP49459 152 aa3.31□□□□□ -1.88
CUX1-208ENST00000485792 Q6ZRX8 168 aa3.31□□□□□ -1.88
CUX1-208ENST00000485792 PCP2Q8IVA1 136 aa3.31□□□□□ -1.88
CUX1-208ENST00000485792 ATOH7Q8N100 152 aa3.31□□□□□ -1.88
CUX1-208ENST00000485792 C3orf22Q8N5N4 141 aa3.31□□□□□ -1.88
CUX1-208ENST00000485792 IFITM1P13164 125 aa3.3□□□□□ -1.88
CUX1-208ENST00000485792 NPC2P61916 151 aa3.3□□□□□ -1.88
CUX1-208ENST00000485792 TRBV7-6A0A0J9YX20 115 aa3.29□□□□□ -1.88
CUX1-208ENST00000485792 C20orf202A1L168 122 aa3.29□□□□□ -1.88
CUX1-208ENST00000485792 ZNF73O43830 326 aaPredicted RBP3.29□□□□□ -1.88
CUX1-208ENST00000485792 IGKV2-30P06310 120 aa3.29□□□□□ -1.88
CUX1-208ENST00000485792 SPRR1BP22528 89 aa3.29□□□□□ -1.88
CUX1-208ENST00000485792 LINC00518Q8N0U6 118 aa3.29□□□□□ -1.88
CUX1-208ENST00000485792 TYMSOSQ8TAI1 123 aa3.29□□□□□ -1.88
CUX1-208ENST00000485792 MIEN1Q9BRT3 115 aa3.29□□□□□ -1.88
CUX1-208ENST00000485792 TRAV23DV6A0A075B6W5 121 aa3.28□□□□□ -1.88
CUX1-208ENST00000485792 ETDCA0A1B0GVM5 59 aa3.28□□□□□ -1.88
CUX1-208ENST00000485792 DLEU1O43261 78 aa3.28□□□□□ -1.88
CUX1-208ENST00000485792 Q8N9P0 234 aaPredicted RBP3.28□□□□□ -1.88
CUX1-208ENST00000485792 HIGD2AQ9BW72 106 aa3.28□□□□□ -1.88
CUX1-208ENST00000485792 ZNF706Q9Y5V0 76 aaPredicted RBP3.28□□□□□ -1.88
CUX1-208ENST00000485792 S100A6P06703 90 aa3.27□□□□□ -1.89
CUX1-208ENST00000485792 S100A2P29034 98 aa3.27□□□□□ -1.89
CUX1-208ENST00000485792 ELOF1P60002 83 aaKnown RBP3.27□□□□□ -1.89
CUX1-208ENST00000485792 RPS29P62273 56 aaKnown RBP3.27□□□□□ -1.89
CUX1-208ENST00000485792 MUSTN1Q8IVN3 82 aa3.27□□□□□ -1.89
CUX1-208ENST00000485792 CBY1Q9Y3M2 126 aa3.27□□□□□ -1.89
CUX1-208ENST00000485792 COX8AP10176 69 aa3.26□□□□□ -1.89
CUX1-208ENST00000485792 LINC01547P58512 204 aaPredicted RBP3.26□□□□□ -1.89
CUX1-208ENST00000485792 S100A12P80511 92 aa3.26□□□□□ -1.89
CUX1-208ENST00000485792 JOSD1Q15040 202 aaPredicted RBP3.26□□□□□ -1.89
CUX1-208ENST00000485792 S100A7L2Q5SY68 101 aa3.26□□□□□ -1.89
CUX1-208ENST00000485792 SPAG11AQ6PDA7 123 aa3.26□□□□□ -1.89
CUX1-208ENST00000485792 SSBP3-AS1Q7Z2R9 100 aa3.26□□□□□ -1.89
CUX1-208ENST00000485792 LINC00304Q8N9R0 145 aa3.26□□□□□ -1.89
CUX1-208ENST00000485792 COPS9Q8WXC6 57 aa3.26□□□□□ -1.89
CUX1-208ENST00000485792 RETNLBQ9BQ08 111 aa3.26□□□□□ -1.89
CUX1-208ENST00000485792 IGLV5-48A0A075B6I7 105 aa3.25□□□□□ -1.89
CUX1-208ENST00000485792 SCGB1D4Q6XE38 83 aa3.25□□□□□ -1.89
CUX1-208ENST00000485792 ST20-AS1Q8NBB2 130 aa3.25□□□□□ -1.89
CUX1-208ENST00000485792 DHRS4-AS1Q9P1J3 65 aa3.25□□□□□ -1.89
CUX1-208ENST00000485792 SPINK1P00995 79 aa3.24□□□□□ -1.89
CUX1-208ENST00000485792 TPRXLQ17RH7 258 aa3.24□□□□□ -1.89
CUX1-208ENST00000485792 C6orf99Q4VX62 202 aa3.24□□□□□ -1.89
CUX1-208ENST00000485792 SMIM29Q86T20 159 aa3.24□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 72.2 ms