RNA–Protein interactions for RNA: ENST00000478916.5

SYNE1-224, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 7,780 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-224ENST00000478916 A0A1B0GVX0 72 aa5.87□□□□□ -1.47
SYNE1-224ENST00000478916 K7EIL1 84 aa5.87□□□□□ -1.47
SYNE1-224ENST00000478916 IGFL1Q6UW32 110 aa5.87□□□□□ -1.47
SYNE1-224ENST00000478916 DSCR10P59022 87 aa5.86□□□□□ -1.47
SYNE1-224ENST00000478916 KRTAP10-11P60412 298 aa5.86□□□□□ -1.47
SYNE1-224ENST00000478916 SETD2Q9BYW2 2564 aaPredicted RBP5.86□□□□□ -1.47
SYNE1-224ENST00000478916 KCNQ1DNQ9H478 68 aa5.86□□□□□ -1.47
SYNE1-224ENST00000478916 IGLV1-50A0A075B6I6 118 aa5.85□□□□□ -1.47
SYNE1-224ENST00000478916 LINC00528Q8N1L1 170 aa5.85□□□□□ -1.47
SYNE1-224ENST00000478916 FASNP49327 2511 aaKnown RBP5.84□□□□□ -1.47
SYNE1-224ENST00000478916 FAM168BA1KXE4 195 aa5.84□□□□□ -1.47
SYNE1-224ENST00000478916 C19orf73Q9NVV2 129 aa5.84□□□□□ -1.47
SYNE1-224ENST00000478916 Q1T7F1 81 aa5.84□□□□□ -1.47
SYNE1-224ENST00000478916 CSNK1G2-AS1Q8NCQ2 148 aa5.83□□□□□ -1.48
SYNE1-224ENST00000478916 FAM104AQ969W3 186 aa5.83□□□□□ -1.48
SYNE1-224ENST00000478916 A0A096LNT2 108 aa5.83□□□□□ -1.48
SYNE1-224ENST00000478916 MTORP42345 2549 aa5.83□□□□□ -1.48
SYNE1-224ENST00000478916 H3BS24 57 aa5.82□□□□□ -1.48
SYNE1-224ENST00000478916 A0A0D9SG42 100 aa5.81□□□□□ -1.48
SYNE1-224ENST00000478916 RBM12B-AS1Q9P1G2 102 aa5.81□□□□□ -1.48
SYNE1-224ENST00000478916 PKD1L2Q7Z442 2459 aa5.81□□□□□ -1.48
SYNE1-224ENST00000478916 Q8N377 158 aa5.81□□□□□ -1.48
SYNE1-224ENST00000478916 OBSCN-AS1Q96MR7 158 aa5.8□□□□□ -1.48
SYNE1-224ENST00000478916 COX6B2Q6YFQ2 88 aa5.79□□□□□ -1.48
SYNE1-224ENST00000478916 KRTAP10-3P60369 221 aa5.78□□□□□ -1.48
SYNE1-224ENST00000478916 POLQO75417 2590 aa5.77□□□□□ -1.49
SYNE1-224ENST00000478916 LINC00304Q8N9R0 145 aa5.77□□□□□ -1.49
SYNE1-224ENST00000478916 A0A087WTM6 91 aa5.77□□□□□ -1.49
SYNE1-224ENST00000478916 F8P00451 2351 aa5.77□□□□□ -1.49
SYNE1-224ENST00000478916 PRR34Q9NV39 138 aa5.76□□□□□ -1.49
SYNE1-224ENST00000478916 IGLV5-37A0A075B6J1 123 aa5.76□□□□□ -1.49
SYNE1-224ENST00000478916 LINC00483Q53H64 154 aa5.75□□□□□ -1.49
SYNE1-224ENST00000478916 A0A0A0MQY5 61 aa5.75□□□□□ -1.49
SYNE1-224ENST00000478916 EIF4EBP3O60516 100 aaPredicted RBP5.75□□□□□ -1.49
SYNE1-224ENST00000478916 Q75L30 129 aa5.75□□□□□ -1.49
SYNE1-224ENST00000478916 C15orf56Q8N910 161 aa5.75□□□□□ -1.49
SYNE1-224ENST00000478916 C9orf92A6NGG3 77 aa5.75□□□□□ -1.49
SYNE1-224ENST00000478916 ACANP16112 2415 aa5.75□□□□□ -1.49
SYNE1-224ENST00000478916 ZNF861PO60384 105 aa5.75□□□□□ -1.49
SYNE1-224ENST00000478916 PLA2G2DQ9UNK4 145 aa5.75□□□□□ -1.49
SYNE1-224ENST00000478916 IGLV5-48A0A075B6I7 105 aa5.74□□□□□ -1.49
SYNE1-224ENST00000478916 LINC00612Q8N6U2 182 aa5.74□□□□□ -1.49
SYNE1-224ENST00000478916 C9orf163Q8N9P6 203 aa5.74□□□□□ -1.49
SYNE1-224ENST00000478916 UTRNP46939 3433 aa5.72□□□□□ -1.49
SYNE1-224ENST00000478916 KRTAP1-3Q8IUG1 177 aa5.72□□□□□ -1.49
SYNE1-224ENST00000478916 Q8N1X5 172 aa5.72□□□□□ -1.49
SYNE1-224ENST00000478916 EPG5Q9HCE0 2579 aa5.72□□□□□ -1.49
SYNE1-224ENST00000478916 GIG44P09565 113 aaPredicted RBP5.72□□□□□ -1.49
SYNE1-224ENST00000478916 A0A0G2JQZ4 141 aa5.71□□□□□ -1.49
SYNE1-224ENST00000478916 A0A1W2PNN7 141 aa5.71□□□□□ -1.49
SYNE1-224ENST00000478916 TLX1NBP0CAT3 122 aa5.71□□□□□ -1.49
SYNE1-224ENST00000478916 OCR1Q9BZK8 76 aa5.71□□□□□ -1.5
SYNE1-224ENST00000478916 A0A1B0GU33 70 aa5.69□□□□□ -1.5
SYNE1-224ENST00000478916 A0A1W2PNM2 257 aa5.69□□□□□ -1.5
SYNE1-224ENST00000478916 PRR26Q8N8Z3 221 aa5.69□□□□□ -1.5
SYNE1-224ENST00000478916 SMR3BP02814 79 aaPredicted RBP5.69□□□□□ -1.5
SYNE1-224ENST00000478916 IGLV7-46A0A075B6I9 117 aa5.69□□□□□ -1.5
SYNE1-224ENST00000478916 ZNF575Q86XF7 245 aa5.69□□□□□ -1.5
SYNE1-224ENST00000478916 KRTAP1-1Q07627 177 aa5.69□□□□□ -1.5
SYNE1-224ENST00000478916 IGLV7-43P04211 117 aa5.68□□□□□ -1.5
SYNE1-224ENST00000478916 DMAC1Q96GE9 116 aa5.68□□□□□ -1.5
SYNE1-224ENST00000478916 CENPFP49454 3210 aa5.68□□□□□ -1.5
SYNE1-224ENST00000478916 CNBPP62633 177 aaKnown RBP5.68□□□□□ -1.5
SYNE1-224ENST00000478916 CR1P17927 2039 aa5.66□□□□□ -1.5
SYNE1-224ENST00000478916 Q5XG85 94 aa5.66□□□□□ -1.5
SYNE1-224ENST00000478916 GOLGB1Q14789 3259 aaKnown RBP5.66□□□□□ -1.5
SYNE1-224ENST00000478916 SPRR4Q96PI1 79 aa5.65□□□□□ -1.51
SYNE1-224ENST00000478916 LINC01558Q9Y6Z2 57 aa5.65□□□□□ -1.51
SYNE1-224ENST00000478916 PSORS1C2Q9UIG4 136 aa5.64□□□□□ -1.51
SYNE1-224ENST00000478916 CAMK2N1Q7Z7J9 78 aa5.64□□□□□ -1.51
SYNE1-224ENST00000478916 PRAC1Q96KF2 57 aa5.64□□□□□ -1.51
SYNE1-224ENST00000478916 CSAG1Q6PB30 78 aa5.63□□□□□ -1.51
SYNE1-224ENST00000478916 FAM229BQ4G0N7 80 aa5.63□□□□□ -1.51
SYNE1-224ENST00000478916 ANAPC11Q9NYG5 84 aa5.63□□□□□ -1.51
SYNE1-224ENST00000478916 USP34Q70CQ2 3546 aa5.62□□□□□ -1.51
SYNE1-224ENST00000478916 Q8N9P0 234 aaPredicted RBP5.62□□□□□ -1.51
SYNE1-224ENST00000478916 HECTD1Q9ULT8 2610 aa5.62□□□□□ -1.51
SYNE1-224ENST00000478916 FLNBO75369 2602 aaKnown RBP5.61□□□□□ -1.51
SYNE1-224ENST00000478916 HRES1P13985 223 aa5.6□□□□□ -1.51
SYNE1-224ENST00000478916 CASC10Q5T4H9 136 aa5.59□□□□□ -1.51
SYNE1-224ENST00000478916 FP248Q71RG6 208 aaPredicted RBP5.59□□□□□ -1.51
SYNE1-224ENST00000478916 Q5VV11 94 aa5.58□□□□□ -1.52
SYNE1-224ENST00000478916 SPINK7P58062 85 aa5.56□□□□□ -1.52
SYNE1-224ENST00000478916 TNP2Q05952 138 aa5.56□□□□□ -1.52
SYNE1-224ENST00000478916 Q6ZSA8 131 aa5.52□□□□□ -1.53
SYNE1-224ENST00000478916 MGAM2Q2M2H8 2515 aa5.52□□□□□ -1.53
SYNE1-224ENST00000478916 ROMO1P60602 79 aa5.5□□□□□ -1.53
SYNE1-224ENST00000478916 S4R3F8 94 aa5.5□□□□□ -1.53
SYNE1-224ENST00000478916 CYSTM1Q9H1C7 97 aa5.5□□□□□ -1.53
SYNE1-224ENST00000478916 MMP24-AS1A0A0U1RRL7 71 aa5.49□□□□□ -1.53
SYNE1-224ENST00000478916 ASB16-AS1Q495Z4 193 aa5.48□□□□□ -1.53
SYNE1-224ENST00000478916 KRTAP16-1A8MUX0 517 aa5.47□□□□□ -1.53
SYNE1-224ENST00000478916 ZCCHC13Q8WW36 166 aaKnown RBP5.47□□□□□ -1.53
SYNE1-224ENST00000478916 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP5.47□□□□□ -1.53
SYNE1-224ENST00000478916 USP24Q9UPU5 2620 aa5.47□□□□□ -1.53
SYNE1-224ENST00000478916 FLNAP21333 2647 aaKnown RBP5.47□□□□□ -1.53
SYNE1-224ENST00000478916 HELZ2Q9BYK8 2649 aaKnown RBP5.46□□□□□ -1.54
SYNE1-224ENST00000478916 RPL37P61927 97 aaKnown RBP5.45□□□□□ -1.54
SYNE1-224ENST00000478916 PLAC8Q9NZF1 115 aa5.45□□□□□ -1.54
SYNE1-224ENST00000478916 Q5W150 140 aa5.44□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms