RNA–Protein interactions for RNA: ENST00000477935.1

VPS50-214, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2

Gene VPS50, Length 760 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-214ENST00000477935 MAP1LC3B2A6NCE7 125 aa2□□□□□ -2.09
VPS50-214ENST00000477935 A6NDN8 102 aa2□□□□□ -2.09
VPS50-214ENST00000477935 SCO1O75880 301 aa2□□□□□ -2.09
VPS50-214ENST00000477935 FAM236CP0DP71 79 aa2□□□□□ -2.09
VPS50-214ENST00000477935 IFI27P40305 119 aaPredicted RBP2□□□□□ -2.09
VPS50-214ENST00000477935 SEC11AP67812 179 aa2□□□□□ -2.09
VPS50-214ENST00000477935 CD164Q04900 197 aa2□□□□□ -2.09
VPS50-214ENST00000477935 C9orf153Q5TBE3 101 aa2□□□□□ -2.09
VPS50-214ENST00000477935 Q5XG85 94 aa2□□□□□ -2.09
VPS50-214ENST00000477935 C20orf78Q9BR46 151 aa2□□□□□ -2.09
VPS50-214ENST00000477935 C2orf88Q9BSF0 95 aa2□□□□□ -2.09
VPS50-214ENST00000477935 MAP1LC3BQ9GZQ8 125 aa2□□□□□ -2.09
VPS50-214ENST00000477935 TMEM191AQ9H0A3 160 aa2□□□□□ -2.09
VPS50-214ENST00000477935 BORCS7-ASMTA0A0B4J1R7 106 aa1.99□□□□□ -2.09
VPS50-214ENST00000477935 LYRM1O43325 122 aa1.99□□□□□ -2.09
VPS50-214ENST00000477935 GNG4P50150 75 aa1.99□□□□□ -2.09
VPS50-214ENST00000477935 RAB5BP61020 215 aa1.99□□□□□ -2.09
VPS50-214ENST00000477935 RPL39P62891 51 aaKnown RBP1.99□□□□□ -2.09
VPS50-214ENST00000477935 AKR1C8PQ5T2L2 129 aa1.99□□□□□ -2.09
VPS50-214ENST00000477935 BORCS7Q96B45 105 aa1.99□□□□□ -2.09
VPS50-214ENST00000477935 TMEM141Q96I45 108 aa1.99□□□□□ -2.09
VPS50-214ENST00000477935 TRAV9-1A0A075B6T8 112 aa1.98□□□□□ -2.09
VPS50-214ENST00000477935 ETDCA0A1B0GVM5 59 aa1.98□□□□□ -2.09
VPS50-214ENST00000477935 A8MWP4 228 aa1.98□□□□□ -2.09
VPS50-214ENST00000477935 PFN2P35080 140 aa1.98□□□□□ -2.09
VPS50-214ENST00000477935 SPRR1AP35321 89 aa1.98□□□□□ -2.09
VPS50-214ENST00000477935 HERVK_113P63121 156 aa1.98□□□□□ -2.09
VPS50-214ENST00000477935 CCL20P78556 96 aa1.98□□□□□ -2.09
VPS50-214ENST00000477935 S100A12P80511 92 aa1.98□□□□□ -2.09
VPS50-214ENST00000477935 COX17Q14061 63 aa1.98□□□□□ -2.09
VPS50-214ENST00000477935 CENPWQ5EE01 88 aa1.98□□□□□ -2.09
VPS50-214ENST00000477935 EIF5A2Q9GZV4 153 aaKnown RBP1.98□□□□□ -2.09
VPS50-214ENST00000477935 RBM12B-AS1Q9P1G2 102 aa1.98□□□□□ -2.09
VPS50-214ENST00000477935 TRBV24-1A0A075B6N3 115 aa1.97□□□□□ -2.09
VPS50-214ENST00000477935 LINC00862A6NCI5 91 aa1.97□□□□□ -2.09
VPS50-214ENST00000477935 A8MWL6 223 aa1.97□□□□□ -2.09
VPS50-214ENST00000477935 PLA2G10O15496 165 aa1.97□□□□□ -2.09
VPS50-214ENST00000477935 IL7P13232 177 aa1.97□□□□□ -2.09
VPS50-214ENST00000477935 H2BFSP57053 126 aa1.97□□□□□ -2.09
VPS50-214ENST00000477935 RAB14P61106 215 aa1.97□□□□□ -2.09
VPS50-214ENST00000477935 LUZP6Q538Z0 58 aa1.97□□□□□ -2.09
VPS50-214ENST00000477935 PDZD11Q5EBL8 140 aa1.97□□□□□ -2.09
VPS50-214ENST00000477935 C1orf195Q5TG92 126 aa1.97□□□□□ -2.09
VPS50-214ENST00000477935 KCNQ1DNQ9H478 68 aa1.97□□□□□ -2.09
VPS50-214ENST00000477935 CHTOPQ9Y3Y2 248 aaKnown RBP1.97□□□□□ -2.09
VPS50-214ENST00000477935 DSTQ03001 7570 aaKnown RBP1.96□□□□□ -2.09
VPS50-214ENST00000477935 SPINT4Q6UDR6 99 aa1.96□□□□□ -2.1
VPS50-214ENST00000477935 HRCT1Q6UXD1 115 aa1.96□□□□□ -2.1
VPS50-214ENST00000477935 KCNRGQ8N5I3 272 aa1.96□□□□□ -2.1
VPS50-214ENST00000477935 COX7B2Q8TF08 81 aa1.96□□□□□ -2.1
VPS50-214ENST00000477935 SFT2D1Q8WV19 159 aa1.96□□□□□ -2.1
VPS50-214ENST00000477935 MBD3L1Q8WWY6 194 aa1.96□□□□□ -2.1
VPS50-214ENST00000477935 SPRR2FQ96RM1 72 aa1.96□□□□□ -2.1
VPS50-214ENST00000477935 SND1-IT1Q9HBX3 110 aa1.96□□□□□ -2.1
VPS50-214ENST00000477935 MED9Q9NWA0 146 aa1.96□□□□□ -2.1
VPS50-214ENST00000477935 CDKN2A-AS1Q9UH64 79 aa1.96□□□□□ -2.1
VPS50-214ENST00000477935 LOC107984156A0A0G2JMH3 177 aa1.95□□□□□ -2.1
VPS50-214ENST00000477935 A0A0G2JQZ4 141 aa1.95□□□□□ -2.1
VPS50-214ENST00000477935 A0A1B0GUT8 65 aa1.95□□□□□ -2.1
VPS50-214ENST00000477935 ATP6V1G2O95670 118 aa1.95□□□□□ -2.1
VPS50-214ENST00000477935 RAB5AP20339 215 aa1.95□□□□□ -2.1
VPS50-214ENST00000477935 SPRR2DP22532 72 aa1.95□□□□□ -2.1
VPS50-214ENST00000477935 ALKAL2Q6UX46 152 aa1.95□□□□□ -2.1
VPS50-214ENST00000477935 TMEM136Q6ZRR5 245 aa1.95□□□□□ -2.1
VPS50-214ENST00000477935 ARL17AQ8IVW1 177 aa1.95□□□□□ -2.1
VPS50-214ENST00000477935 AMN1Q8IY45 258 aa1.95□□□□□ -2.1
VPS50-214ENST00000477935 AMELXQ99217 191 aa1.95□□□□□ -2.1
VPS50-214ENST00000477935 H7C2G1 150 aa1.94□□□□□ -2.1
VPS50-214ENST00000477935 PDE6DO43924 150 aa1.94□□□□□ -2.1
VPS50-214ENST00000477935 ERC2-IT1O76042 136 aa1.94□□□□□ -2.1
VPS50-214ENST00000477935 TCL1BO95988 128 aa1.94□□□□□ -2.1
VPS50-214ENST00000477935 P0C880 135 aa1.94□□□□□ -2.1
VPS50-214ENST00000477935 JOSD1Q15040 202 aaPredicted RBP1.94□□□□□ -2.1
VPS50-214ENST00000477935 RPL7L1Q6DKI1 246 aaKnown RBP1.94□□□□□ -2.1
VPS50-214ENST00000477935 SMIM2Q9BVW6 85 aa1.94□□□□□ -2.1
VPS50-214ENST00000477935 UMAD1C9J7I0 102 aa1.93□□□□□ -2.1
VPS50-214ENST00000477935 GATCO43716 136 aaKnown RBP1.93□□□□□ -2.1
VPS50-214ENST00000477935 SSNA1O43805 119 aa1.93□□□□□ -2.1
VPS50-214ENST00000477935 CKS2P33552 79 aa1.93□□□□□ -2.1
VPS50-214ENST00000477935 KRTAP21-2Q3LI59 83 aa1.93□□□□□ -2.1
VPS50-214ENST00000477935 PRO1933Q9H354 126 aa1.93□□□□□ -2.1
VPS50-214ENST00000477935 MANBALQ9NQG1 85 aa1.93□□□□□ -2.1
VPS50-214ENST00000477935 LAMTOR3Q9UHA4 124 aa1.93□□□□□ -2.1
VPS50-214ENST00000477935 ERG28Q9UKR5 140 aa1.93□□□□□ -2.1
VPS50-214ENST00000477935 HMSDA8MTL9 139 aa1.92□□□□□ -2.1
VPS50-214ENST00000477935 SPRR1BP22528 89 aa1.92□□□□□ -2.1
VPS50-214ENST00000477935 AKR1D1P51857 326 aa1.92□□□□□ -2.1
VPS50-214ENST00000477935 MRPL51Q4U2R6 128 aaKnown RBP1.92□□□□□ -2.1
VPS50-214ENST00000477935 FAM104BQ5XKR9 115 aa1.92□□□□□ -2.1
VPS50-214ENST00000477935 SFTA2Q6UW10 78 aa1.92□□□□□ -2.1
VPS50-214ENST00000477935 Q6ZRX8 168 aa1.92□□□□□ -2.1
VPS50-214ENST00000477935 C1orf64Q8NEQ6 169 aa1.92□□□□□ -2.1
VPS50-214ENST00000477935 ENKURQ8TC29 256 aa1.92□□□□□ -2.1
VPS50-214ENST00000477935 ZCCHC13Q8WW36 166 aaKnown RBP1.92□□□□□ -2.1
VPS50-214ENST00000477935 ZNF625Q96I27 306 aaPredicted RBP1.92□□□□□ -2.1
VPS50-214ENST00000477935 OBSCN-AS1Q96MR7 158 aa1.92□□□□□ -2.1
VPS50-214ENST00000477935 Q9BRP9 147 aa1.92□□□□□ -2.1
VPS50-214ENST00000477935 CYSLTR1Q9Y271 337 aa1.92□□□□□ -2.1
VPS50-214ENST00000477935 HIGD1CA8MV81 97 aa1.91□□□□□ -2.1
VPS50-214ENST00000477935 PPBPP02775 128 aa1.91□□□□□ -2.1
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms