RNA–Protein interactions for RNA: ENST00000471246.1

UBXN4-207, Transcript of UBX domain protein 4, humanhuman

TSL 3

Gene UBXN4, Length 395 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBXN4-207ENST00000471246 TRBV19A0A075B6N1 114 aa-0.45□□□□□ -2.48
UBXN4-207ENST00000471246 TRBV6-1A0A0K0K1D8 114 aa-0.45□□□□□ -2.48
UBXN4-207ENST00000471246 TEX49A0A1B0GTD5 131 aa-0.45□□□□□ -2.48
UBXN4-207ENST00000471246 TMEM256-PLSCR3K7ERE1 68 aa-0.45□□□□□ -2.48
UBXN4-207ENST00000471246 CDC42EP2O14613 210 aa-0.45□□□□□ -2.48
UBXN4-207ENST00000471246 DEGS1O15121 323 aa-0.45□□□□□ -2.48
UBXN4-207ENST00000471246 HMGB3O15347 200 aaKnown RBP-0.45□□□□□ -2.48
UBXN4-207ENST00000471246 PIAS1O75925 651 aa-0.45□□□□□ -2.48
UBXN4-207ENST00000471246 APOA2P02652 100 aa-0.45□□□□□ -2.48
UBXN4-207ENST00000471246 ACYP1P07311 99 aa-0.45□□□□□ -2.48
UBXN4-207ENST00000471246 IFI6P09912 130 aa-0.45□□□□□ -2.48
UBXN4-207ENST00000471246 COX4I1P13073 169 aa-0.45□□□□□ -2.48
UBXN4-207ENST00000471246 SERPINB1P30740 379 aa-0.45□□□□□ -2.48
UBXN4-207ENST00000471246 RPL22P35268 128 aaKnown RBP-0.45□□□□□ -2.48
UBXN4-207ENST00000471246 MYL6P60660 151 aa-0.45□□□□□ -2.48
UBXN4-207ENST00000471246 S100A10P60903 97 aa-0.45□□□□□ -2.48
UBXN4-207ENST00000471246 LSM6P62312 80 aaKnown RBP-0.45□□□□□ -2.48
UBXN4-207ENST00000471246 TPM4P67936 248 aa-0.45□□□□□ -2.48
UBXN4-207ENST00000471246 HIST1H3AP68431 136 aa-0.45□□□□□ -2.48
UBXN4-207ENST00000471246 POU6F1Q14863 301 aa-0.45□□□□□ -2.48
UBXN4-207ENST00000471246 ZNF56Q15929 161 aa-0.45□□□□□ -2.48
UBXN4-207ENST00000471246 C1orf140Q5VVS0 124 aa-0.45□□□□□ -2.48
UBXN4-207ENST00000471246 XAF1Q6GPH4 301 aa-0.45□□□□□ -2.48
UBXN4-207ENST00000471246 MUSTN1Q8IVN3 82 aa-0.45□□□□□ -2.48
UBXN4-207ENST00000471246 OR8I2Q8N0Y5 310 aa-0.45□□□□□ -2.48
UBXN4-207ENST00000471246 TMEM229BQ8NBD8 167 aa-0.45□□□□□ -2.48
UBXN4-207ENST00000471246 SMIM2Q9BVW6 85 aa-0.45□□□□□ -2.48
UBXN4-207ENST00000471246 PARVBQ9HBI1 364 aa-0.45□□□□□ -2.48
UBXN4-207ENST00000471246 SSR3Q9UNL2 185 aa-0.45□□□□□ -2.48
UBXN4-207ENST00000471246 CPSF4LA6NMK7 179 aaKnown RBP-0.46□□□□□ -2.48
UBXN4-207ENST00000471246 IFITM5A6NNB3 132 aa-0.46□□□□□ -2.48
UBXN4-207ENST00000471246 TPST1O60507 370 aa-0.46□□□□□ -2.48
UBXN4-207ENST00000471246 PPP1R17O96001 155 aa-0.46□□□□□ -2.48
UBXN4-207ENST00000471246 APOC1P02654 83 aa-0.46□□□□□ -2.48
UBXN4-207ENST00000471246 CKS1BP61024 79 aa-0.46□□□□□ -2.48
UBXN4-207ENST00000471246 NCS1P62166 190 aa-0.46□□□□□ -2.48
UBXN4-207ENST00000471246 RPS28P62857 69 aaKnown RBP-0.46□□□□□ -2.48
UBXN4-207ENST00000471246 SARNPP82979 210 aaKnown RBP-0.46□□□□□ -2.48
UBXN4-207ENST00000471246 WT1-ASQ06250 92 aa-0.46□□□□□ -2.48
UBXN4-207ENST00000471246 LTC4SQ16873 150 aa-0.46□□□□□ -2.48
UBXN4-207ENST00000471246 MORN2Q502X0 79 aa-0.46□□□□□ -2.48
UBXN4-207ENST00000471246 SLC48A1Q6P1K1 146 aa-0.46□□□□□ -2.48
UBXN4-207ENST00000471246 DEFB106AQ8N104 65 aa-0.46□□□□□ -2.48
UBXN4-207ENST00000471246 C5orf17Q8NAS9 161 aa-0.46□□□□□ -2.48
UBXN4-207ENST00000471246 SKA2Q8WVK7 121 aaPredicted RBP-0.46□□□□□ -2.48
UBXN4-207ENST00000471246 ARL11Q969Q4 196 aa-0.46□□□□□ -2.48
UBXN4-207ENST00000471246 SPTSSAQ969W0 71 aa-0.46□□□□□ -2.48
UBXN4-207ENST00000471246 CEP19Q96LK0 163 aa-0.46□□□□□ -2.48
UBXN4-207ENST00000471246 FAM107BQ9H098 131 aa-0.46□□□□□ -2.48
UBXN4-207ENST00000471246 NDUFA4L2Q9NRX3 87 aa-0.46□□□□□ -2.48
UBXN4-207ENST00000471246 COPZ2Q9P299 210 aa-0.46□□□□□ -2.48
UBXN4-207ENST00000471246 SPCS1Q9Y6A9 102 aa-0.46□□□□□ -2.48
UBXN4-207ENST00000471246 TRAV36DV7A0A075B6V5 113 aa-0.47□□□□□ -2.48
UBXN4-207ENST00000471246 TRAV13-2A0A0B4J235 113 aa-0.47□□□□□ -2.48
UBXN4-207ENST00000471246 PNMA8CA0A1B0GUJ8 204 aa-0.47□□□□□ -2.48
UBXN4-207ENST00000471246 TCRBV3S1A0A5B6 114 aa-0.47□□□□□ -2.48
UBXN4-207ENST00000471246 IGLC7A0M8Q6 106 aa-0.47□□□□□ -2.48
UBXN4-207ENST00000471246 D6R8Y8 96 aa-0.47□□□□□ -2.48
UBXN4-207ENST00000471246 F8VRH5 84 aa-0.47□□□□□ -2.48
UBXN4-207ENST00000471246 M0R135 149 aa-0.47□□□□□ -2.48
UBXN4-207ENST00000471246 CYB5AP00167 134 aa-0.47□□□□□ -2.48
UBXN4-207ENST00000471246 CXCL1P09341 107 aa-0.47□□□□□ -2.48
UBXN4-207ENST00000471246 SAA2P0DJI9 122 aaPredicted RBP-0.47□□□□□ -2.48
UBXN4-207ENST00000471246 RPL35P42766 123 aaKnown RBP-0.47□□□□□ -2.48
UBXN4-207ENST00000471246 CEBPGP53567 150 aa-0.47□□□□□ -2.48
UBXN4-207ENST00000471246 COPZ1P61923 177 aa-0.47□□□□□ -2.48
UBXN4-207ENST00000471246 BASP1P80723 227 aaKnown RBP-0.47□□□□□ -2.48
UBXN4-207ENST00000471246 EMX2Q04743 252 aa-0.47□□□□□ -2.48
UBXN4-207ENST00000471246 TAF1AQ15573 450 aaPredicted RBP-0.47□□□□□ -2.48
UBXN4-207ENST00000471246 DCUN1D2Q6PH85 259 aa-0.47□□□□□ -2.48
UBXN4-207ENST00000471246 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa-0.47□□□□□ -2.48
UBXN4-207ENST00000471246 BORCS8Q96FH0 119 aa-0.47□□□□□ -2.48
UBXN4-207ENST00000471246 ARHGAP5-AS1Q96IT6 56 aa-0.47□□□□□ -2.48
UBXN4-207ENST00000471246 CCDC42Q96M95 316 aa-0.47□□□□□ -2.48
UBXN4-207ENST00000471246 ARMC1Q9NVT9 282 aa-0.47□□□□□ -2.48
UBXN4-207ENST00000471246 NAT8BQ9UHF3 227 aa-0.47□□□□□ -2.48
UBXN4-207ENST00000471246 TRBV7-4A0A0J9YYF1 115 aa-0.48□□□□□ -2.49
UBXN4-207ENST00000471246 LOC285095A0A1B0GVY8 99 aa-0.48□□□□□ -2.49
UBXN4-207ENST00000471246 PVALEFA0A1B0GWK0 134 aa-0.48□□□□□ -2.49
UBXN4-207ENST00000471246 SNRPGP15A8MWD9 76 aa-0.48□□□□□ -2.49
UBXN4-207ENST00000471246 APOC4-APOC2K7ER74 178 aa-0.48□□□□□ -2.49
UBXN4-207ENST00000471246 M0R3E3 92 aa-0.48□□□□□ -2.49
UBXN4-207ENST00000471246 CORTO00230 105 aa-0.48□□□□□ -2.49
UBXN4-207ENST00000471246 PDCD5O14737 125 aa-0.48□□□□□ -2.49
UBXN4-207ENST00000471246 RER1O15258 196 aa-0.48□□□□□ -2.49
UBXN4-207ENST00000471246 NDUFB1O75438 58 aa-0.48□□□□□ -2.49
UBXN4-207ENST00000471246 FABP1P07148 127 aa-0.48□□□□□ -2.49
UBXN4-207ENST00000471246 IGLC6P0CF74 106 aa-0.48□□□□□ -2.49
UBXN4-207ENST00000471246 TRAPPC2P0DI81 140 aa-0.48□□□□□ -2.49
UBXN4-207ENST00000471246 TRAPPC2BP0DI82 140 aa-0.48□□□□□ -2.49
UBXN4-207ENST00000471246 SAA1P0DJI8 122 aaPredicted RBP-0.48□□□□□ -2.49
UBXN4-207ENST00000471246 RPL7P18124 248 aaKnown RBP-0.48□□□□□ -2.49
UBXN4-207ENST00000471246 SDC4P31431 198 aa-0.48□□□□□ -2.49
UBXN4-207ENST00000471246 CRIP1P50238 77 aa-0.48□□□□□ -2.49
UBXN4-207ENST00000471246 POLR2KP53803 58 aaKnown RBP-0.48□□□□□ -2.49
UBXN4-207ENST00000471246 TMBIM6P55061 237 aa-0.48□□□□□ -2.49
UBXN4-207ENST00000471246 SNRPFP62306 86 aaKnown RBP-0.48□□□□□ -2.49
UBXN4-207ENST00000471246 SNRPGP62308 76 aaKnown RBP-0.48□□□□□ -2.49
UBXN4-207ENST00000471246 COTL1Q14019 142 aa-0.48□□□□□ -2.49
UBXN4-207ENST00000471246 RPL39P5Q59GN2 51 aa-0.48□□□□□ -2.49
Retrieved 100 of 20,778 RNA–protein pairs in 88.7 ms