RNA–Protein interactions for RNA: ENST00000470815.1

HERC3-208, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 3, humanhuman

TSL 4

Gene HERC3, Length 564 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC3-208ENST00000470815 HUWE1Q7Z6Z7 4374 aaKnown RBP-0.12□□□□□ -2.43
HERC3-208ENST00000470815 ACYP1P07311 99 aa-0.12□□□□□ -2.43
HERC3-208ENST00000470815 DNHD1Q96M86 4753 aa-0.12□□□□□ -2.43
HERC3-208ENST00000470815 APC2O95996 2303 aa-0.12□□□□□ -2.43
HERC3-208ENST00000470815 RGPD4Q7Z3J3 1758 aa-0.12□□□□□ -2.43
HERC3-208ENST00000470815 MYCBP2O75592 4640 aa-0.12□□□□□ -2.43
HERC3-208ENST00000470815 LRP2P98164 4655 aa-0.13□□□□□ -2.43
HERC3-208ENST00000470815 USP32Q8NFA0 1604 aa-0.13□□□□□ -2.43
HERC3-208ENST00000470815 KIF20BQ96Q89 1820 aa-0.13□□□□□ -2.43
HERC3-208ENST00000470815 SETXQ7Z333 2677 aaKnown RBP-0.13□□□□□ -2.43
HERC3-208ENST00000470815 RGPD3A6NKT7 1758 aaPredicted RBP-0.13□□□□□ -2.43
HERC3-208ENST00000470815 IFI6P09912 130 aa-0.13□□□□□ -2.43
HERC3-208ENST00000470815 STARD9Q9P2P6 4700 aa-0.13□□□□□ -2.43
HERC3-208ENST00000470815 KIAA1551Q9HCM1 1747 aa-0.13□□□□□ -2.43
HERC3-208ENST00000470815 MYO3AQ8NEV4 1616 aa-0.13□□□□□ -2.43
HERC3-208ENST00000470815 ZNF831Q5JPB2 1677 aa-0.14□□□□□ -2.43
HERC3-208ENST00000470815 NCOA2Q15596 1464 aa-0.14□□□□□ -2.43
HERC3-208ENST00000470815 KANTRA0A1W2PQU2 76 aa-0.14□□□□□ -2.43
HERC3-208ENST00000470815 H3BUT2 72 aa-0.14□□□□□ -2.43
HERC3-208ENST00000470815 ADIRFQ15847 76 aa-0.14□□□□□ -2.43
HERC3-208ENST00000470815 KRTAP6-2Q3LI66 62 aa-0.14□□□□□ -2.43
HERC3-208ENST00000470815 ST20Q9HBF5 79 aa-0.14□□□□□ -2.43
HERC3-208ENST00000470815 ALMS1Q8TCU4 4167 aa-0.14□□□□□ -2.43
HERC3-208ENST00000470815 COL6A3P12111 3177 aa-0.14□□□□□ -2.43
HERC3-208ENST00000470815 ABCC3O15438 1527 aa-0.14□□□□□ -2.43
HERC3-208ENST00000470815 FAT1Q14517 4588 aa-0.14□□□□□ -2.43
HERC3-208ENST00000470815 KNL1Q8NG31 2342 aa-0.14□□□□□ -2.43
HERC3-208ENST00000470815 UACAQ9BZF9 1416 aa-0.14□□□□□ -2.43
HERC3-208ENST00000470815 CNOT1A5YKK6 2376 aaKnown RBP-0.14□□□□□ -2.43
HERC3-208ENST00000470815 FLNAP21333 2647 aaKnown RBP-0.15□□□□□ -2.43
HERC3-208ENST00000470815 BIRC6Q9NR09 4857 aa-0.15□□□□□ -2.43
HERC3-208ENST00000470815 PKD1L3Q7Z443 1732 aa-0.15□□□□□ -2.43
HERC3-208ENST00000470815 TMEM131LA2VDJ0 1609 aa-0.15□□□□□ -2.43
HERC3-208ENST00000470815 UMAD1C9J7I0 102 aa-0.15□□□□□ -2.43
HERC3-208ENST00000470815 RPL38P63173 70 aaKnown RBP-0.15□□□□□ -2.43
HERC3-208ENST00000470815 DEFA5Q01523 94 aa-0.15□□□□□ -2.43
HERC3-208ENST00000470815 S100A13Q99584 98 aa-0.15□□□□□ -2.43
HERC3-208ENST00000470815 FAT3Q8TDW7 4589 aa-0.15□□□□□ -2.43
HERC3-208ENST00000470815 HECTD4Q9Y4D8 3996 aa-0.15□□□□□ -2.43
HERC3-208ENST00000470815 COL14A1Q05707 1796 aaKnown RBP-0.15□□□□□ -2.43
HERC3-208ENST00000470815 TENM2Q9NT68 2774 aa-0.15□□□□□ -2.43
HERC3-208ENST00000470815 ACANP16112 2415 aa-0.15□□□□□ -2.43
HERC3-208ENST00000470815 ZANQ9Y493 2812 aa-0.15□□□□□ -2.43
HERC3-208ENST00000470815 HIVEP1P15822 2718 aa-0.15□□□□□ -2.43
HERC3-208ENST00000470815 PRKDCP78527 4128 aaKnown RBP-0.15□□□□□ -2.43
HERC3-208ENST00000470815 FLNBO75369 2602 aaKnown RBP-0.16□□□□□ -2.43
HERC3-208ENST00000470815 LRRC9Q6ZRR7 1453 aa-0.16□□□□□ -2.43
HERC3-208ENST00000470815 KIF14Q15058 1648 aa-0.16□□□□□ -2.43
HERC3-208ENST00000470815 ALKQ9UM73 1620 aa-0.16□□□□□ -2.43
HERC3-208ENST00000470815 BCORQ6W2J9 1755 aa-0.16□□□□□ -2.43
HERC3-208ENST00000470815 PCNX1Q96RV3 2341 aa-0.16□□□□□ -2.43
HERC3-208ENST00000470815 NDUFB1O75438 58 aa-0.16□□□□□ -2.44
HERC3-208ENST00000470815 SMIM13P0DJ93 91 aa-0.16□□□□□ -2.44
HERC3-208ENST00000470815 DEFB121Q5J5C9 76 aa-0.16□□□□□ -2.44
HERC3-208ENST00000470815 BVES-AS1Q5T3Y7 98 aa-0.16□□□□□ -2.44
HERC3-208ENST00000470815 COX6B2Q6YFQ2 88 aa-0.16□□□□□ -2.44
HERC3-208ENST00000470815 MED14O60244 1454 aa-0.16□□□□□ -2.44
HERC3-208ENST00000470815 DOPEY1Q5JWR5 2465 aa-0.16□□□□□ -2.44
HERC3-208ENST00000470815 A0A087WXM4 84 aa-0.17□□□□□ -2.44
HERC3-208ENST00000470815 IFI27P40305 119 aaPredicted RBP-0.17□□□□□ -2.44
HERC3-208ENST00000470815 LINC00158P58513 81 aa-0.17□□□□□ -2.44
HERC3-208ENST00000470815 QSER1Q2KHR3 1735 aa-0.17□□□□□ -2.44
HERC3-208ENST00000470815 KRTAP20-1Q3LI63 56 aa-0.17□□□□□ -2.44
HERC3-208ENST00000470815 KRTAP19-7Q3SYF9 63 aa-0.17□□□□□ -2.44
HERC3-208ENST00000470815 DOT1LQ8TEK3 1739 aa-0.17□□□□□ -2.44
HERC3-208ENST00000470815 PRO3102Q9H379 93 aa-0.17□□□□□ -2.44
HERC3-208ENST00000470815 SVEP1Q4LDE5 3571 aa-0.17□□□□□ -2.44
HERC3-208ENST00000470815 LCE6AA0A183 80 aa-0.18□□□□□ -2.44
HERC3-208ENST00000470815 H0YAA0 97 aa-0.18□□□□□ -2.44
HERC3-208ENST00000470815 HMGA1P17096 107 aaKnown RBP-0.18□□□□□ -2.44
HERC3-208ENST00000470815 NREPQ16612 68 aa-0.18□□□□□ -2.44
HERC3-208ENST00000470815 CICQ96RK0 1608 aaPredicted RBP-0.18□□□□□ -2.44
HERC3-208ENST00000470815 PREX1Q8TCU6 1659 aa-0.18□□□□□ -2.44
HERC3-208ENST00000470815 URB2Q14146 1524 aaKnown RBP-0.18□□□□□ -2.44
HERC3-208ENST00000470815 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP-0.18□□□□□ -2.44
HERC3-208ENST00000470815 PPLO60437 1756 aa-0.19□□□□□ -2.44
HERC3-208ENST00000470815 TRANK1O15050 2925 aa-0.19□□□□□ -2.44
HERC3-208ENST00000470815 SRRM2Q9UQ35 2752 aaKnown RBP-0.19□□□□□ -2.44
HERC3-208ENST00000470815 H0YGG7 62 aa-0.19□□□□□ -2.44
HERC3-208ENST00000470815 NDUFA4O00483 81 aa-0.19□□□□□ -2.44
HERC3-208ENST00000470815 C3orf79P0CE67 100 aa-0.19□□□□□ -2.44
HERC3-208ENST00000470815 KRTAP20-2Q3LI61 65 aa-0.19□□□□□ -2.44
HERC3-208ENST00000470815 C18orf32Q8TCD1 76 aa-0.19□□□□□ -2.44
HERC3-208ENST00000470815 ERVK-7P63135 1459 aa-0.19□□□□□ -2.44
HERC3-208ENST00000470815 PDE4DIPQ5VU43 2346 aa-0.19□□□□□ -2.44
HERC3-208ENST00000470815 POLR1AO95602 1720 aaPredicted RBP-0.19□□□□□ -2.44
HERC3-208ENST00000470815 SUPT6HQ7KZ85 1726 aaKnown RBP-0.19□□□□□ -2.44
HERC3-208ENST00000470815 MAP1AP78559 2803 aaPredicted RBP-0.19□□□□□ -2.44
HERC3-208ENST00000470815 AKAP13Q12802 2813 aa-0.19□□□□□ -2.44
HERC3-208ENST00000470815 DIP2BQ9P265 1576 aa-0.19□□□□□ -2.44
HERC3-208ENST00000470815 CEP170BQ9Y4F5 1589 aaPredicted RBP-0.19□□□□□ -2.44
HERC3-208ENST00000470815 TNRC18O15417 2968 aaPredicted RBP-0.2□□□□□ -2.44
HERC3-208ENST00000470815 PRRC2CQ9Y520 2896 aaKnown RBP-0.2□□□□□ -2.44
HERC3-208ENST00000470815 SPRR2AP35326 72 aa-0.2□□□□□ -2.44
HERC3-208ENST00000470815 ATP5EP2Q5VTU8 51 aa-0.2□□□□□ -2.44
HERC3-208ENST00000470815 RGPD8O14715 1765 aaPredicted RBP-0.2□□□□□ -2.44
HERC3-208ENST00000470815 LTN1O94822 1766 aa-0.2□□□□□ -2.44
HERC3-208ENST00000470815 RGPD5Q99666 1765 aa-0.2□□□□□ -2.44
HERC3-208ENST00000470815 ADAMTS12P58397 1594 aa-0.2□□□□□ -2.44
HERC3-208ENST00000470815 PTPN23Q9H3S7 1636 aa-0.2□□□□□ -2.44
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms