RNA–Protein interactions for RNA: ENST00000469439.1

SYNE1-219, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 3

Gene SYNE1, Length 630 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-219ENST00000469439 GTF2H5Q6ZYL4 71 aa3.72□□□□□ -1.81
SYNE1-219ENST00000469439 SPACA4Q8TDM5 124 aa3.72□□□□□ -1.81
SYNE1-219ENST00000469439 DIRC1Q969H9 104 aa3.72□□□□□ -1.81
SYNE1-219ENST00000469439 TGP01266 2768 aa3.72□□□□□ -1.81
SYNE1-219ENST00000469439 TRAV23DV6A0A075B6W5 121 aa3.71□□□□□ -1.82
SYNE1-219ENST00000469439 A0A096LNI7 61 aa3.71□□□□□ -1.82
SYNE1-219ENST00000469439 ETDCA0A1B0GVM5 59 aa3.71□□□□□ -1.82
SYNE1-219ENST00000469439 DNAL4O96015 105 aa3.71□□□□□ -1.82
SYNE1-219ENST00000469439 INAFM2P0DMQ5 153 aa3.71□□□□□ -1.82
SYNE1-219ENST00000469439 VPREB1P12018 145 aa3.71□□□□□ -1.82
SYNE1-219ENST00000469439 RPL13AP40429 203 aaKnown RBP3.71□□□□□ -1.82
SYNE1-219ENST00000469439 RPL28P46779 137 aaKnown RBP3.71□□□□□ -1.82
SYNE1-219ENST00000469439 OCIAD2Q56VL3 154 aa3.71□□□□□ -1.82
SYNE1-219ENST00000469439 PLAC8Q9NZF1 115 aa3.71□□□□□ -1.82
SYNE1-219ENST00000469439 DHRS4-AS1Q9P1J3 65 aa3.71□□□□□ -1.82
SYNE1-219ENST00000469439 C22orf24Q9Y442 160 aa3.71□□□□□ -1.82
SYNE1-219ENST00000469439 A0A087WYN8 130 aa3.7□□□□□ -1.82
SYNE1-219ENST00000469439 IGLV6-57P01721 117 aa3.7□□□□□ -1.82
SYNE1-219ENST00000469439 C9orf129Q5T035 196 aaKnown RBP3.7□□□□□ -1.82
SYNE1-219ENST00000469439 FAM19A5Q7Z5A7 132 aaPredicted RBP3.7□□□□□ -1.82
SYNE1-219ENST00000469439 SNHG12Q9BXW3 62 aa3.7□□□□□ -1.82
SYNE1-219ENST00000469439 KCNQ1DNQ9H478 68 aa3.7□□□□□ -1.82
SYNE1-219ENST00000469439 IGLV1-50A0A075B6I6 118 aa3.69□□□□□ -1.82
SYNE1-219ENST00000469439 H0Y9J4 135 aa3.69□□□□□ -1.82
SYNE1-219ENST00000469439 NCR3O14931 201 aa3.69□□□□□ -1.82
SYNE1-219ENST00000469439 ZNF73O43830 326 aaPredicted RBP3.69□□□□□ -1.82
SYNE1-219ENST00000469439 ATXN8Q156A1 80 aa3.69□□□□□ -1.82
SYNE1-219ENST00000469439 REG3GQ6UW15 175 aa3.69□□□□□ -1.82
SYNE1-219ENST00000469439 SOSTDC1Q6X4U4 206 aa3.69□□□□□ -1.82
SYNE1-219ENST00000469439 LINC00337Q8N6G1 96 aa3.69□□□□□ -1.82
SYNE1-219ENST00000469439 TENM2Q9NT68 2774 aa3.68□□□□□ -1.82
SYNE1-219ENST00000469439 IGKV2-28A0A075B6P5 120 aa3.68□□□□□ -1.82
SYNE1-219ENST00000469439 TRBV10-3A0A0K0K1G6 114 aa3.68□□□□□ -1.82
SYNE1-219ENST00000469439 EPM2AB3EWF7 344 aa3.68□□□□□ -1.82
SYNE1-219ENST00000469439 H7C2G1 150 aa3.68□□□□□ -1.82
SYNE1-219ENST00000469439 IGKV2D-28P01615 120 aa3.68□□□□□ -1.82
SYNE1-219ENST00000469439 COX7BP24311 80 aa3.68□□□□□ -1.82
SYNE1-219ENST00000469439 Q6ZSA8 131 aa3.68□□□□□ -1.82
SYNE1-219ENST00000469439 PPDPFLQ8WWR9 84 aa3.68□□□□□ -1.82
SYNE1-219ENST00000469439 LINC00167Q96N53 147 aa3.68□□□□□ -1.82
SYNE1-219ENST00000469439 ZNF706Q9Y5V0 76 aaPredicted RBP3.68□□□□□ -1.82
SYNE1-219ENST00000469439 A0A1W2PPM0 123 aa3.67□□□□□ -1.82
SYNE1-219ENST00000469439 TSPAN13O95857 204 aa3.67□□□□□ -1.82
SYNE1-219ENST00000469439 UBE2AP49459 152 aa3.67□□□□□ -1.82
SYNE1-219ENST00000469439 C6orf99Q4VX62 202 aa3.67□□□□□ -1.82
SYNE1-219ENST00000469439 SMIM11BQ8TCY0 68 aa3.67□□□□□ -1.82
SYNE1-219ENST00000469439 hADV29S1A0JD25 119 aa3.66□□□□□ -1.82
SYNE1-219ENST00000469439 H3BUT2 72 aa3.66□□□□□ -1.82
SYNE1-219ENST00000469439 TMEM256-PLSCR3K7ERE1 68 aa3.66□□□□□ -1.82
SYNE1-219ENST00000469439 BCE1O60756 84 aa3.66□□□□□ -1.82
SYNE1-219ENST00000469439 TRACP01848 142 aa3.66□□□□□ -1.82
SYNE1-219ENST00000469439 A0A1B0GVY2 172 aa3.65□□□□□ -1.83
SYNE1-219ENST00000469439 A0A1W2PNN7 141 aa3.65□□□□□ -1.83
SYNE1-219ENST00000469439 RPL37AP8A6NKH3 93 aa3.65□□□□□ -1.83
SYNE1-219ENST00000469439 TAX1BP3O14907 124 aa3.65□□□□□ -1.83
SYNE1-219ENST00000469439 CDK2AP2O75956 126 aa3.65□□□□□ -1.83
SYNE1-219ENST00000469439 SPRR1AP35321 89 aa3.65□□□□□ -1.83
SYNE1-219ENST00000469439 ELOF1P60002 83 aaKnown RBP3.65□□□□□ -1.83
SYNE1-219ENST00000469439 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP3.65□□□□□ -1.83
SYNE1-219ENST00000469439 Q6ZRX8 168 aa3.65□□□□□ -1.83
SYNE1-219ENST00000469439 FAM19A1Q7Z5A9 133 aa3.65□□□□□ -1.83
SYNE1-219ENST00000469439 SPCS1Q9Y6A9 102 aa3.65□□□□□ -1.83
SYNE1-219ENST00000469439 F8W1H4 67 aa3.64□□□□□ -1.83
SYNE1-219ENST00000469439 K7ERJ3 54 aa3.64□□□□□ -1.83
SYNE1-219ENST00000469439 CHTF8P0CG12 524 aa3.64□□□□□ -1.83
SYNE1-219ENST00000469439 PRR3P79522 188 aaKnown RBP3.64□□□□□ -1.83
SYNE1-219ENST00000469439 LINC01620Q4KN68 170 aa3.64□□□□□ -1.83
SYNE1-219ENST00000469439 CIRBP-AS1Q8TBR5 109 aa3.64□□□□□ -1.83
SYNE1-219ENST00000469439 ORMDL1Q9P0S3 153 aa3.64□□□□□ -1.83
SYNE1-219ENST00000469439 DNAH7Q8WXX0 4024 aa3.64□□□□□ -1.83
SYNE1-219ENST00000469439 CSMD3Q7Z407 3707 aa3.64□□□□□ -1.83
SYNE1-219ENST00000469439 FAM168BA1KXE4 195 aa3.63□□□□□ -1.83
SYNE1-219ENST00000469439 LST1O00453 97 aa3.63□□□□□ -1.83
SYNE1-219ENST00000469439 KRTAP10-1P60331 282 aa3.63□□□□□ -1.83
SYNE1-219ENST00000469439 LINC00575Q6W349 94 aa3.63□□□□□ -1.83
SYNE1-219ENST00000469439 SCXQ7RTU7 201 aa3.63□□□□□ -1.83
SYNE1-219ENST00000469439 PHF5AQ7RTV0 110 aaKnown RBP3.63□□□□□ -1.83
SYNE1-219ENST00000469439 F8WEM9 126 aa3.62□□□□□ -1.83
SYNE1-219ENST00000469439 JMJD7-PLA2G4BH0Y9G9 81 aa3.62□□□□□ -1.83
SYNE1-219ENST00000469439 H3BT86 120 aa3.62□□□□□ -1.83
SYNE1-219ENST00000469439 ZNF861PO60384 105 aa3.62□□□□□ -1.83
SYNE1-219ENST00000469439 PDE6GP18545 87 aa3.62□□□□□ -1.83
SYNE1-219ENST00000469439 RPL37AP61513 92 aaKnown RBP3.62□□□□□ -1.83
SYNE1-219ENST00000469439 C1orf137Q5JT78 98 aa3.62□□□□□ -1.83
SYNE1-219ENST00000469439 TEX49A0A1B0GTD5 131 aa3.61□□□□□ -1.83
SYNE1-219ENST00000469439 K7EP34 96 aa3.61□□□□□ -1.83
SYNE1-219ENST00000469439 UBE2V1Q13404 147 aa3.61□□□□□ -1.83
SYNE1-219ENST00000469439 HIGD2AQ9BW72 106 aa3.61□□□□□ -1.83
SYNE1-219ENST00000469439 LAMTOR3Q9UHA4 124 aa3.61□□□□□ -1.83
SYNE1-219ENST00000469439 PSORS1C2Q9UIG4 136 aa3.61□□□□□ -1.83
SYNE1-219ENST00000469439 DYNC2H1Q8NCM8 4307 aaKnown RBP3.61□□□□□ -1.83
SYNE1-219ENST00000469439 J3QR89 54 aa3.6□□□□□ -1.83
SYNE1-219ENST00000469439 IGLV7-43P04211 117 aa3.6□□□□□ -1.83
SYNE1-219ENST00000469439 KRTAP10-5P60370 271 aa3.6□□□□□ -1.83
SYNE1-219ENST00000469439 SPINK6Q6UWN8 80 aa3.6□□□□□ -1.83
SYNE1-219ENST00000469439 C9JAW5 83 aa3.59□□□□□ -1.83
SYNE1-219ENST00000469439 KRTAP4-16G5E9R7 235 aaPredicted RBP3.59□□□□□ -1.83
SYNE1-219ENST00000469439 H3BMG7 143 aa3.59□□□□□ -1.83
SYNE1-219ENST00000469439 TCL1BO95988 128 aa3.59□□□□□ -1.83
SYNE1-219ENST00000469439 BAALC-AS2P0C853 105 aa3.59□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms