RNA–Protein interactions for RNA: ENST00000468937.2

SYNE1-218, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 688 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-218ENST00000468937 TP73-AS1Q9UF72 201 aa2.35□□□□□ -2.03
SYNE1-218ENST00000468937 IGLV10-54A0A075B6I4 117 aa2.34□□□□□ -2.03
SYNE1-218ENST00000468937 TRAV8-3A0A0A6YYJ7 113 aa2.34□□□□□ -2.03
SYNE1-218ENST00000468937 TRAV8-4A0A0B4J246 113 aa2.34□□□□□ -2.03
SYNE1-218ENST00000468937 IGHV1-58A0A0C4DH39 117 aa2.34□□□□□ -2.03
SYNE1-218ENST00000468937 K7EP13 123 aa2.34□□□□□ -2.03
SYNE1-218ENST00000468937 BPY2O14599 106 aa2.34□□□□□ -2.03
SYNE1-218ENST00000468937 COX8AP10176 69 aa2.34□□□□□ -2.03
SYNE1-218ENST00000468937 XCL1P47992 114 aa2.34□□□□□ -2.03
SYNE1-218ENST00000468937 TSPEAR-AS2P59090 65 aa2.34□□□□□ -2.03
SYNE1-218ENST00000468937 S100A12P80511 92 aa2.34□□□□□ -2.03
SYNE1-218ENST00000468937 SS18Q15532 418 aa2.34□□□□□ -2.03
SYNE1-218ENST00000468937 MIAQ16674 131 aa2.34□□□□□ -2.03
SYNE1-218ENST00000468937 C1orf134Q5TEV5 83 aa2.34□□□□□ -2.03
SYNE1-218ENST00000468937 UBE2DNLQ8IWF7 75 aa2.34□□□□□ -2.03
SYNE1-218ENST00000468937 MIR7-3HGQ8N6C7 128 aa2.34□□□□□ -2.03
SYNE1-218ENST00000468937 LINC00469Q8N7U9 141 aa2.34□□□□□ -2.03
SYNE1-218ENST00000468937 TTTY13Q9BZ97 58 aa2.34□□□□□ -2.03
SYNE1-218ENST00000468937 IGHV3-64A0A075B6Q5 118 aa2.33□□□□□ -2.04
SYNE1-218ENST00000468937 IGKV2-24A0A0C4DH68 120 aa2.33□□□□□ -2.04
SYNE1-218ENST00000468937 A0A0U1RQV1 116 aa2.33□□□□□ -2.04
SYNE1-218ENST00000468937 C16orf90A8MZG2 172 aa2.33□□□□□ -2.04
SYNE1-218ENST00000468937 H3BRM9 83 aa2.33□□□□□ -2.04
SYNE1-218ENST00000468937 J3QQQ9 107 aa2.33□□□□□ -2.04
SYNE1-218ENST00000468937 LEPROTO15243 131 aa2.33□□□□□ -2.04
SYNE1-218ENST00000468937 DLEU1O43261 78 aa2.33□□□□□ -2.04
SYNE1-218ENST00000468937 CRPP02741 224 aa2.33□□□□□ -2.04
SYNE1-218ENST00000468937 SPINK8P0C7L1 97 aa2.33□□□□□ -2.04
SYNE1-218ENST00000468937 TTC32Q5I0X7 151 aa2.33□□□□□ -2.04
SYNE1-218ENST00000468937 C2orf91Q6ZV80 131 aa2.33□□□□□ -2.04
SYNE1-218ENST00000468937 C5orf38Q86SI9 138 aa2.33□□□□□ -2.04
SYNE1-218ENST00000468937 BOD1L2Q8IYS8 172 aa2.33□□□□□ -2.04
SYNE1-218ENST00000468937 C10orf126Q8N4M7 172 aa2.33□□□□□ -2.04
SYNE1-218ENST00000468937 UBE2WQ96B02 151 aa2.33□□□□□ -2.04
SYNE1-218ENST00000468937 C14orf144Q96I85 54 aa2.33□□□□□ -2.04
SYNE1-218ENST00000468937 PRO1933Q9H354 126 aa2.33□□□□□ -2.04
SYNE1-218ENST00000468937 NBDYA0A0U1RRE5 68 aa2.32□□□□□ -2.04
SYNE1-218ENST00000468937 TSTD3H0UI37 97 aa2.32□□□□□ -2.04
SYNE1-218ENST00000468937 COX7A2LO14548 114 aa2.32□□□□□ -2.04
SYNE1-218ENST00000468937 Q6ZRN7 208 aaPredicted RBP2.32□□□□□ -2.04
SYNE1-218ENST00000468937 Q8IZM0 81 aa2.32□□□□□ -2.04
SYNE1-218ENST00000468937 PLEKHB2Q96CS7 222 aa2.32□□□□□ -2.04
SYNE1-218ENST00000468937 ZNF625Q96I27 306 aaPredicted RBP2.32□□□□□ -2.04
SYNE1-218ENST00000468937 MIEN1Q9BRT3 115 aa2.32□□□□□ -2.04
SYNE1-218ENST00000468937 UQCR10Q9UDW1 63 aa2.32□□□□□ -2.04
SYNE1-218ENST00000468937 DNAH8Q96JB1 4490 aa2.32□□□□□ -2.04
SYNE1-218ENST00000468937 MYMXA0A1B0GTQ4 84 aa2.31□□□□□ -2.04
SYNE1-218ENST00000468937 ZNF815PA8K554 130 aa2.31□□□□□ -2.04
SYNE1-218ENST00000468937 M0R2N4 97 aa2.31□□□□□ -2.04
SYNE1-218ENST00000468937 NDUFA1O15239 70 aa2.31□□□□□ -2.04
SYNE1-218ENST00000468937 LGALS3P17931 250 aaKnown RBP2.31□□□□□ -2.04
SYNE1-218ENST00000468937 DDTP30046 118 aa2.31□□□□□ -2.04
SYNE1-218ENST00000468937 COX7B2Q8TF08 81 aa2.31□□□□□ -2.04
SYNE1-218ENST00000468937 ORAOV1Q8WV07 137 aa2.31□□□□□ -2.04
SYNE1-218ENST00000468937 HIGD1BQ9P298 99 aa2.31□□□□□ -2.04
SYNE1-218ENST00000468937 NDUFA12Q9UI09 145 aa2.31□□□□□ -2.04
SYNE1-218ENST00000468937 PKHD1L1Q86WI1 4243 aa2.31□□□□□ -2.04
SYNE1-218ENST00000468937 FAT1Q14517 4588 aa2.3□□□□□ -2.04
SYNE1-218ENST00000468937 GVQW2A0A096LPI5 108 aaPredicted RBP2.3□□□□□ -2.04
SYNE1-218ENST00000468937 LINC00587B1AMM8 73 aa2.3□□□□□ -2.04
SYNE1-218ENST00000468937 APOMO95445 188 aa2.3□□□□□ -2.04
SYNE1-218ENST00000468937 SPAG11BQ08648 103 aa2.3□□□□□ -2.04
SYNE1-218ENST00000468937 WFDC2Q14508 124 aa2.3□□□□□ -2.04
SYNE1-218ENST00000468937 KRTAP21-2Q3LI59 83 aa2.3□□□□□ -2.04
SYNE1-218ENST00000468937 SFTA2Q6UW10 78 aa2.3□□□□□ -2.04
SYNE1-218ENST00000468937 C2orf82Q6UX34 121 aa2.3□□□□□ -2.04
SYNE1-218ENST00000468937 LINC00526Q96FQ7 95 aa2.3□□□□□ -2.04
SYNE1-218ENST00000468937 SPANXB1Q9NS25 103 aaPredicted RBP2.3□□□□□ -2.04
SYNE1-218ENST00000468937 TOMM7Q9P0U1 55 aa2.3□□□□□ -2.04
SYNE1-218ENST00000468937 TIMM17BO60830 172 aa2.29□□□□□ -2.04
SYNE1-218ENST00000468937 CTAG1AP78358 180 aa2.29□□□□□ -2.04
SYNE1-218ENST00000468937 TAL2Q16559 108 aa2.29□□□□□ -2.04
SYNE1-218ENST00000468937 UNQ6190/PRO20217Q6UXQ8 127 aa2.29□□□□□ -2.04
SYNE1-218ENST00000468937 SCGB1D4Q6XE38 83 aa2.29□□□□□ -2.04
SYNE1-218ENST00000468937 SPANXDQ9BXN6 97 aa2.29□□□□□ -2.04
SYNE1-218ENST00000468937 SPANXCQ9NY87 97 aa2.29□□□□□ -2.04
SYNE1-218ENST00000468937 TRBV30A0A0K0K1B3 111 aa2.28□□□□□ -2.04
SYNE1-218ENST00000468937 TMEM238C9JI98 176 aa2.28□□□□□ -2.04
SYNE1-218ENST00000468937 LECT2O14960 151 aa2.28□□□□□ -2.04
SYNE1-218ENST00000468937 SMIM13P0DJ93 91 aa2.28□□□□□ -2.04
SYNE1-218ENST00000468937 INAFM2P0DMQ5 153 aa2.28□□□□□ -2.04
SYNE1-218ENST00000468937 CKS1BP61024 79 aa2.28□□□□□ -2.04
SYNE1-218ENST00000468937 HSD52Q0P140 79 aa2.28□□□□□ -2.04
SYNE1-218ENST00000468937 COX17Q14061 63 aa2.28□□□□□ -2.04
SYNE1-218ENST00000468937 VAMP3Q15836 100 aa2.28□□□□□ -2.04
SYNE1-218ENST00000468937 C9orf116Q5BN46 136 aaPredicted RBP2.28□□□□□ -2.04
SYNE1-218ENST00000468937 BVES-AS1Q5T3Y7 98 aa2.28□□□□□ -2.04
SYNE1-218ENST00000468937 Q5VSD8 79 aa2.28□□□□□ -2.04
SYNE1-218ENST00000468937 SOSTDC1Q6X4U4 206 aa2.28□□□□□ -2.04
SYNE1-218ENST00000468937 Q6ZRU5 148 aa2.28□□□□□ -2.04
SYNE1-218ENST00000468937 SNHG12Q9BXW3 62 aa2.28□□□□□ -2.04
SYNE1-218ENST00000468937 C6orf48Q9UBA6 75 aa2.28□□□□□ -2.04
SYNE1-218ENST00000468937 ERG28Q9UKR5 140 aa2.28□□□□□ -2.04
SYNE1-218ENST00000468937 UBR4Q5T4S7 5183 aa2.28□□□□□ -2.04
SYNE1-218ENST00000468937 FAT3Q8TDW7 4589 aa2.27□□□□□ -2.05
SYNE1-218ENST00000468937 A0A087WTM6 91 aa2.27□□□□□ -2.05
SYNE1-218ENST00000468937 LOC107984156A0A0G2JMH3 177 aa2.27□□□□□ -2.05
SYNE1-218ENST00000468937 PSCAO43653 123 aa2.27□□□□□ -2.05
SYNE1-218ENST00000468937 PFN2P35080 140 aa2.27□□□□□ -2.05
SYNE1-218ENST00000468937 FXYD2P54710 66 aa2.27□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms