RNA–Protein interactions for RNA: ENST00000463478.1

HERC4-208, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 4, humanhuman

TSL 3

Gene HERC4, Length 546 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC4-208ENST00000463478 HSPG2P98160 4391 aa0.99□□□□□ -2.25
HERC4-208ENST00000463478 LOC285556D6RIA3 1793 aa0.98□□□□□ -2.25
HERC4-208ENST00000463478 LRP1Q07954 4544 aaKnown RBP0.98□□□□□ -2.25
HERC4-208ENST00000463478 NRXN3Q9Y4C0 1643 aa0.98□□□□□ -2.25
HERC4-208ENST00000463478 FAUP35544 74 aaKnown RBP0.98□□□□□ -2.25
HERC4-208ENST00000463478 ALKAL2Q6UX46 152 aa0.98□□□□□ -2.25
HERC4-208ENST00000463478 FANCAO15360 1455 aa0.98□□□□□ -2.25
HERC4-208ENST00000463478 RAPGEF2Q9Y4G8 1499 aa0.98□□□□□ -2.25
HERC4-208ENST00000463478 A0A0G2JND7 137 aa0.97□□□□□ -2.25
HERC4-208ENST00000463478 FAM223BA6NKX1 122 aa0.97□□□□□ -2.25
HERC4-208ENST00000463478 SMIM11AP58511 58 aa0.97□□□□□ -2.25
HERC4-208ENST00000463478 COX6A2Q02221 97 aa0.97□□□□□ -2.25
HERC4-208ENST00000463478 PSMG4Q5JS54 123 aa0.97□□□□□ -2.25
HERC4-208ENST00000463478 Q6JHZ5 121 aa0.97□□□□□ -2.25
HERC4-208ENST00000463478 LYSTQ99698 3801 aa0.97□□□□□ -2.25
HERC4-208ENST00000463478 CNFNQ9BYD5 112 aa0.97□□□□□ -2.25
HERC4-208ENST00000463478 PLAC8Q9NZF1 115 aa0.97□□□□□ -2.25
HERC4-208ENST00000463478 ARHGEF12Q9NZN5 1544 aa0.97□□□□□ -2.25
HERC4-208ENST00000463478 F5P12259 2224 aa0.97□□□□□ -2.25
HERC4-208ENST00000463478 PLEKHH2Q8IVE3 1493 aa0.97□□□□□ -2.25
HERC4-208ENST00000463478 ZNF815PA8K554 130 aa0.96□□□□□ -2.26
HERC4-208ENST00000463478 RABAC1Q9UI14 185 aa0.96□□□□□ -2.26
HERC4-208ENST00000463478 ARHGEF5Q12774 1597 aa0.96□□□□□ -2.26
HERC4-208ENST00000463478 UGGT1Q9NYU2 1555 aa0.96□□□□□ -2.26
HERC4-208ENST00000463478 HAMPP81172 84 aa0.95□□□□□ -2.26
HERC4-208ENST00000463478 SFTA2Q6UW10 78 aa0.95□□□□□ -2.26
HERC4-208ENST00000463478 ZNF720Q7Z2F6 126 aa0.95□□□□□ -2.26
HERC4-208ENST00000463478 SSBP3-AS1Q7Z2R9 100 aa0.95□□□□□ -2.26
HERC4-208ENST00000463478 LRP2P98164 4655 aa0.95□□□□□ -2.26
HERC4-208ENST00000463478 DOCK11Q5JSL3 2073 aa0.95□□□□□ -2.26
HERC4-208ENST00000463478 HRNRQ86YZ3 2850 aaPredicted RBP0.94□□□□□ -2.26
HERC4-208ENST00000463478 TSC2P49815 1807 aa0.94□□□□□ -2.26
HERC4-208ENST00000463478 DNAH9Q9NYC9 4486 aa0.94□□□□□ -2.26
HERC4-208ENST00000463478 ATP10BO94823 1461 aa0.94□□□□□ -2.26
HERC4-208ENST00000463478 NRXN1Q9ULB1 1477 aa0.94□□□□□ -2.26
HERC4-208ENST00000463478 SCRIBQ14160 1630 aa0.94□□□□□ -2.26
HERC4-208ENST00000463478 C10orf142B7Z368 130 aa0.94□□□□□ -2.26
HERC4-208ENST00000463478 C9orf62Q8N4C0 152 aa0.94□□□□□ -2.26
HERC4-208ENST00000463478 SPCS1Q9Y6A9 102 aa0.94□□□□□ -2.26
HERC4-208ENST00000463478 GLI2P10070 1586 aa0.94□□□□□ -2.26
HERC4-208ENST00000463478 ANKRD26Q9UPS8 1709 aa0.94□□□□□ -2.26
HERC4-208ENST00000463478 PLIN4Q96Q06 1357 aa0.94□□□□□ -2.26
HERC4-208ENST00000463478 ABCC3O15438 1527 aa0.94□□□□□ -2.26
HERC4-208ENST00000463478 KCPQ6ZWJ8 1503 aa0.94□□□□□ -2.26
HERC4-208ENST00000463478 PSME4Q14997 1843 aa0.94□□□□□ -2.26
HERC4-208ENST00000463478 TRBV6-1A0A0K0K1D8 114 aa0.93□□□□□ -2.26
HERC4-208ENST00000463478 C7orf77A4D0Y5 90 aa0.93□□□□□ -2.26
HERC4-208ENST00000463478 M0R3E3 92 aa0.93□□□□□ -2.26
HERC4-208ENST00000463478 SUPT6HQ7KZ85 1726 aaKnown RBP0.92□□□□□ -2.26
HERC4-208ENST00000463478 CEP162Q5TB80 1403 aa0.92□□□□□ -2.26
HERC4-208ENST00000463478 H3BQF6 201 aa0.92□□□□□ -2.26
HERC4-208ENST00000463478 C10orf113Q5VZT2 155 aa0.92□□□□□ -2.26
HERC4-208ENST00000463478 ADAMTS12P58397 1594 aa0.91□□□□□ -2.26
HERC4-208ENST00000463478 AKAP12Q02952 1782 aa0.91□□□□□ -2.26
HERC4-208ENST00000463478 PKD1P98161 4303 aa0.91□□□□□ -2.26
HERC4-208ENST00000463478 LCN9Q8WX39 176 aa0.91□□□□□ -2.26
HERC4-208ENST00000463478 PKD1L3Q7Z443 1732 aa0.91□□□□□ -2.26
HERC4-208ENST00000463478 ANK3Q12955 4377 aaKnown RBP0.91□□□□□ -2.26
HERC4-208ENST00000463478 FAT2Q9NYQ8 4349 aa0.91□□□□□ -2.26
HERC4-208ENST00000463478 KDM5DQ9BY66 1539 aa0.9□□□□□ -2.26
HERC4-208ENST00000463478 PAPPAQ13219 1627 aa0.9□□□□□ -2.26
HERC4-208ENST00000463478 TCHHQ07283 1943 aa0.9□□□□□ -2.27
HERC4-208ENST00000463478 K7EP34 96 aa0.9□□□□□ -2.27
HERC4-208ENST00000463478 ETDBQ3ZM63 59 aa0.9□□□□□ -2.27
HERC4-208ENST00000463478 SBF2Q86WG5 1849 aa0.89□□□□□ -2.27
HERC4-208ENST00000463478 ARMS2P0C7Q2 107 aa0.89□□□□□ -2.27
HERC4-208ENST00000463478 C20orf78Q9BR46 151 aa0.89□□□□□ -2.27
HERC4-208ENST00000463478 MYO7AQ13402 2215 aa0.89□□□□□ -2.27
HERC4-208ENST00000463478 CACNA1CQ13936 2221 aa0.89□□□□□ -2.27
HERC4-208ENST00000463478 EEA1Q15075 1411 aa0.89□□□□□ -2.27
HERC4-208ENST00000463478 URB1O60287 2271 aaKnown RBP0.89□□□□□ -2.27
HERC4-208ENST00000463478 PLECQ15149 4684 aaKnown RBP0.88□□□□□ -2.27
HERC4-208ENST00000463478 PEA15Q15121 130 aa0.88□□□□□ -2.27
HERC4-208ENST00000463478 S100A16Q96FQ6 103 aaKnown RBP0.88□□□□□ -2.27
HERC4-208ENST00000463478 UACAQ9BZF9 1416 aa0.88□□□□□ -2.27
HERC4-208ENST00000463478 KDM3BQ7LBC6 1761 aa0.88□□□□□ -2.27
HERC4-208ENST00000463478 HUWE1Q7Z6Z7 4374 aaKnown RBP0.87□□□□□ -2.27
HERC4-208ENST00000463478 WNK2Q9Y3S1 2297 aa0.87□□□□□ -2.27
HERC4-208ENST00000463478 C1orf167Q5SNV9 1468 aa0.87□□□□□ -2.27
HERC4-208ENST00000463478 POLR1AO95602 1720 aaPredicted RBP0.87□□□□□ -2.27
HERC4-208ENST00000463478 AKAP6Q13023 2319 aa0.87□□□□□ -2.27
HERC4-208ENST00000463478 CYB5AP00167 134 aa0.87□□□□□ -2.27
HERC4-208ENST00000463478 PIGYQ3MUY2 71 aa0.87□□□□□ -2.27
HERC4-208ENST00000463478 LINC01600Q96MT4 127 aa0.87□□□□□ -2.27
HERC4-208ENST00000463478 TP53AIP1Q9HCN2 124 aa0.87□□□□□ -2.27
HERC4-208ENST00000463478 STARD9Q9P2P6 4700 aa0.87□□□□□ -2.27
HERC4-208ENST00000463478 EDC4Q6P2E9 1401 aaKnown RBP0.87□□□□□ -2.27
HERC4-208ENST00000463478 C3P01024 1663 aa0.87□□□□□ -2.27
HERC4-208ENST00000463478 POLA1P09884 1462 aaPredicted RBP0.86□□□□□ -2.27
HERC4-208ENST00000463478 NLRP1Q9C000 1473 aa0.86□□□□□ -2.27
HERC4-208ENST00000463478 PLCE1Q9P212 2302 aa0.86□□□□□ -2.27
HERC4-208ENST00000463478 TRBV7-4A0A0J9YYF1 115 aa0.86□□□□□ -2.27
HERC4-208ENST00000463478 H0Y9P7 68 aa0.86□□□□□ -2.27
HERC4-208ENST00000463478 HMGN2P05204 90 aaKnown RBP0.86□□□□□ -2.27
HERC4-208ENST00000463478 SNRPFP62306 86 aaKnown RBP0.86□□□□□ -2.27
HERC4-208ENST00000463478 HIGD1BQ9P298 99 aa0.86□□□□□ -2.27
HERC4-208ENST00000463478 ABCA8O94911 1581 aa0.86□□□□□ -2.27
HERC4-208ENST00000463478 LRRC9Q6ZRR7 1453 aa0.86□□□□□ -2.27
HERC4-208ENST00000463478 ZNF236Q9UL36 1845 aa0.85□□□□□ -2.27
HERC4-208ENST00000463478 A0A087WVE0 104 aa0.85□□□□□ -2.27
Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms