RNA–Protein interactions for RNA: ENST00000460912.6

SYNE1-215, Transcript of spectrin repeat containing nuclear envelope protein 1, human

TSL 1 (best)

Gene SYNE1, Length 3,664 nt, Biotype processed transcript, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE1-215	ENST00000460912	SERP2	Q8N6R1	65 aa		5.8	□□□□□ -1.48
SYNE1-215	ENST00000460912		F8WEM9	126 aa		5.79	□□□□□ -1.48
SYNE1-215	ENST00000460912	CLPSL2	Q6UWE3	100 aa		5.79	□□□□□ -1.48
SYNE1-215	ENST00000460912	LOC110117498	A0A087WWA1	95 aa		5.79	□□□□□ -1.48
SYNE1-215	ENST00000460912	LECT2	O14960	151 aa		5.79	□□□□□ -1.48
SYNE1-215	ENST00000460912	CCK	P06307	115 aa		5.79	□□□□□ -1.48
SYNE1-215	ENST00000460912	UNQ6190/PRO20217	Q6UXQ8	127 aa		5.79	□□□□□ -1.48
SYNE1-215	ENST00000460912	OXT	P01178	125 aa		5.79	□□□□□ -1.48
SYNE1-215	ENST00000460912	SPART-AS1	P0CW21	52 aa		5.79	□□□□□ -1.48
SYNE1-215	ENST00000460912	RPL18A	Q02543	176 aa	Known RBP	5.79	□□□□□ -1.48
SYNE1-215	ENST00000460912		Q6JHZ5	121 aa		5.79	□□□□□ -1.48
SYNE1-215	ENST00000460912	RMI2	Q96E14	147 aa		5.79	□□□□□ -1.48
SYNE1-215	ENST00000460912	C4orf48	Q5BLP8	95 aa		5.78	□□□□□ -1.48
SYNE1-215	ENST00000460912	TRBV7-6	A0A0J9YX20	115 aa		5.78	□□□□□ -1.48
SYNE1-215	ENST00000460912	SACS	Q9NZJ4	4579 aa		5.78	□□□□□ -1.48
SYNE1-215	ENST00000460912	UPK3B	Q9BT76	320 aa		5.77	□□□□□ -1.49
SYNE1-215	ENST00000460912	VPREB1	P12018	145 aa		5.77	□□□□□ -1.49
SYNE1-215	ENST00000460912	NCR3	O14931	201 aa		5.77	□□□□□ -1.49
SYNE1-215	ENST00000460912	DNAH8	Q96JB1	4490 aa		5.76	□□□□□ -1.49
SYNE1-215	ENST00000460912	ANG	P03950	147 aa	Known RBP	5.76	□□□□□ -1.49
SYNE1-215	ENST00000460912	FAM19A1	Q7Z5A9	133 aa		5.76	□□□□□ -1.49
SYNE1-215	ENST00000460912		Q6ZQT0	140 aa		5.76	□□□□□ -1.49
SYNE1-215	ENST00000460912	NDUFC2-KCTD14	E9PQ53	114 aa		5.76	□□□□□ -1.49
SYNE1-215	ENST00000460912	B9D2	Q9BPU9	175 aa		5.76	□□□□□ -1.49
SYNE1-215	ENST00000460912	ORMDL1	Q9P0S3	153 aa		5.75	□□□□□ -1.49
SYNE1-215	ENST00000460912	IGLV10-54	A0A075B6I4	117 aa		5.75	□□□□□ -1.49
SYNE1-215	ENST00000460912	WFDC10B	Q8IUB3	73 aa		5.75	□□□□□ -1.49
SYNE1-215	ENST00000460912	KRTAP7-1	Q8IUC3	87 aa		5.75	□□□□□ -1.49
SYNE1-215	ENST00000460912	LAMTOR3	Q9UHA4	124 aa		5.75	□□□□□ -1.49
SYNE1-215	ENST00000460912	KRTAP4-16	G5E9R7	235 aa	Predicted RBP	5.74	□□□□□ -1.49
SYNE1-215	ENST00000460912	SPAG11B	Q08648	103 aa		5.74	□□□□□ -1.49
SYNE1-215	ENST00000460912		H3BS24	57 aa		5.74	□□□□□ -1.49
SYNE1-215	ENST00000460912	ELOF1	P60002	83 aa	Known RBP	5.74	□□□□□ -1.49
SYNE1-215	ENST00000460912	ESRG	Q1W209	222 aa		5.73	□□□□□ -1.49
SYNE1-215	ENST00000460912	C6orf99	Q4VX62	202 aa		5.73	□□□□□ -1.49
SYNE1-215	ENST00000460912	SMIM26	A0A096LP01	95 aa		5.73	□□□□□ -1.49
SYNE1-215	ENST00000460912	TMEM256-PLSCR3	K7ERE1	68 aa		5.73	□□□□□ -1.49
SYNE1-215	ENST00000460912	LINC01556	Q5JQF7	62 aa		5.73	□□□□□ -1.49
SYNE1-215	ENST00000460912	TRBV7-4	A0A0J9YYF1	115 aa		5.73	□□□□□ -1.49
SYNE1-215	ENST00000460912		M0R2N4	97 aa		5.73	□□□□□ -1.49
SYNE1-215	ENST00000460912		Q5XG85	94 aa		5.73	□□□□□ -1.49
SYNE1-215	ENST00000460912	JMJD7-PLA2G4B	H0Y9G9	81 aa		5.72	□□□□□ -1.49
SYNE1-215	ENST00000460912	TLX1NB	P0CAT3	122 aa		5.72	□□□□□ -1.49
SYNE1-215	ENST00000460912	DNAH10OS	P0CZ25	163 aa		5.72	□□□□□ -1.49
SYNE1-215	ENST00000460912	PLA2G2D	Q9UNK4	145 aa		5.72	□□□□□ -1.49
SYNE1-215	ENST00000460912	TRBV10-3	A0A0K0K1G6	114 aa		5.71	□□□□□ -1.49
SYNE1-215	ENST00000460912	LINC01547	P58512	204 aa	Predicted RBP	5.71	□□□□□ -1.49
SYNE1-215	ENST00000460912		Q6ZTC4	211 aa		5.71	□□□□□ -1.49
SYNE1-215	ENST00000460912	LINC00528	Q8N1L1	170 aa		5.71	□□□□□ -1.49
SYNE1-215	ENST00000460912	KLK12	Q9UKR0	248 aa		5.71	□□□□□ -1.49
SYNE1-215	ENST00000460912	IGLV5-37	A0A075B6J1	123 aa		5.71	□□□□□ -1.5
SYNE1-215	ENST00000460912	CRYGA	P11844	174 aa		5.71	□□□□□ -1.5
SYNE1-215	ENST00000460912	UBL5	Q9BZL1	73 aa		5.71	□□□□□ -1.5
SYNE1-215	ENST00000460912	ZNF561-AS1	K7EIQ3	104 aa		5.7	□□□□□ -1.5
SYNE1-215	ENST00000460912	RPS28	P62857	69 aa	Known RBP	5.7	□□□□□ -1.5
SYNE1-215	ENST00000460912		Q6ZRP5	223 aa		5.7	□□□□□ -1.5
SYNE1-215	ENST00000460912		Q6ZRU5	148 aa		5.7	□□□□□ -1.5
SYNE1-215	ENST00000460912	C11orf45	Q8TAV5	145 aa		5.7	□□□□□ -1.5
SYNE1-215	ENST00000460912	MGAM2	Q2M2H8	2515 aa		5.69	□□□□□ -1.5
SYNE1-215	ENST00000460912	SPRR1A	P35321	89 aa		5.69	□□□□□ -1.5
SYNE1-215	ENST00000460912	RYR2	Q92736	4967 aa		5.69	□□□□□ -1.5
SYNE1-215	ENST00000460912	DNAH5	Q8TE73	4624 aa		5.69	□□□□□ -1.5
SYNE1-215	ENST00000460912	ATP5EP2	Q5VTU8	51 aa		5.68	□□□□□ -1.5
SYNE1-215	ENST00000460912	KCNQ1DN	Q9H478	68 aa		5.68	□□□□□ -1.5
SYNE1-215	ENST00000460912	SERP1	Q9Y6X1	66 aa		5.68	□□□□□ -1.5
SYNE1-215	ENST00000460912		H3BQ85	93 aa		5.67	□□□□□ -1.5
SYNE1-215	ENST00000460912	TNP2	Q05952	138 aa		5.67	□□□□□ -1.5
SYNE1-215	ENST00000460912	ZNF73	O43830	326 aa	Predicted RBP	5.66	□□□□□ -1.5
SYNE1-215	ENST00000460912	UNQ6493/PRO21345	Q6UXR8	122 aa	Predicted RBP	5.66	□□□□□ -1.5
SYNE1-215	ENST00000460912	PKHD1L1	Q86WI1	4243 aa		5.66	□□□□□ -1.5
SYNE1-215	ENST00000460912	CHKB-CPT1B	H3BT56	60 aa		5.66	□□□□□ -1.5
SYNE1-215	ENST00000460912		M0R378	163 aa		5.65	□□□□□ -1.51
SYNE1-215	ENST00000460912	BCE1	O60756	84 aa		5.65	□□□□□ -1.51
SYNE1-215	ENST00000460912	SERTAD4-AS1	Q5TG53	156 aa		5.64	□□□□□ -1.51
SYNE1-215	ENST00000460912	EPM2A	B3EWF7	344 aa		5.64	□□□□□ -1.51
SYNE1-215	ENST00000460912	FUS	P35637	526 aa	Known RBP eCLIP	5.64	□□□□□ -1.51
SYNE1-215	ENST00000460912	IGLV5-48	A0A075B6I7	105 aa		5.63	□□□□□ -1.51
SYNE1-215	ENST00000460912	XAGE1A	Q9HD64	81 aa		5.63	□□□□□ -1.51
SYNE1-215	ENST00000460912		Q6ZQY7	126 aa		5.63	□□□□□ -1.51
SYNE1-215	ENST00000460912	LINC00588	Q9Y4M8	146 aa		5.63	□□□□□ -1.51
SYNE1-215	ENST00000460912	NOTCH1	P46531	2555 aa		5.63	□□□□□ -1.51
SYNE1-215	ENST00000460912	CXCL6	P80162	114 aa		5.63	□□□□□ -1.51
SYNE1-215	ENST00000460912	CASC10	Q5T4H9	136 aa		5.63	□□□□□ -1.51
SYNE1-215	ENST00000460912	DIRC1	Q969H9	104 aa		5.63	□□□□□ -1.51
SYNE1-215	ENST00000460912		Q8N9L7	120 aa		5.62	□□□□□ -1.51
SYNE1-215	ENST00000460912		Q9BRP9	147 aa		5.62	□□□□□ -1.51
SYNE1-215	ENST00000460912	HIGD2B	Q4VC39	106 aa		5.62	□□□□□ -1.51
SYNE1-215	ENST00000460912		A6NED7	52 aa		5.61	□□□□□ -1.51
SYNE1-215	ENST00000460912		Q6ZVQ6	151 aa		5.61	□□□□□ -1.51
SYNE1-215	ENST00000460912	APLN	Q9ULZ1	77 aa		5.61	□□□□□ -1.51
SYNE1-215	ENST00000460912	COX7B	P24311	80 aa		5.61	□□□□□ -1.51
SYNE1-215	ENST00000460912	KMT2C	Q8NEZ4	4911 aa	Known RBP	5.61	□□□□□ -1.51
SYNE1-215	ENST00000460912	HTN3	P15516	51 aa		5.61	□□□□□ -1.51
SYNE1-215	ENST00000460912	PDE6G	P18545	87 aa		5.61	□□□□□ -1.51
SYNE1-215	ENST00000460912	IGLV1-50	A0A075B6I6	118 aa		5.6	□□□□□ -1.51
SYNE1-215	ENST00000460912		Q8N377	158 aa		5.6	□□□□□ -1.51
SYNE1-215	ENST00000460912	DEFB131B	A0A096LNP1	70 aa		5.6	□□□□□ -1.51
SYNE1-215	ENST00000460912	CAMK2N2	Q96S95	79 aa		5.6	□□□□□ -1.51
SYNE1-215	ENST00000460912	FP248	Q71RG6	208 aa	Predicted RBP	5.59	□□□□□ -1.51
SYNE1-215	ENST00000460912	C7orf33	Q8WU49	177 aa		5.59	□□□□□ -1.51

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