RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 V9GYY9 64 aa7.7□□□□□ -1.18
CPSF3-202ENST00000460593 ITPR2Q14571 2701 aa7.69□□□□□ -1.18
CPSF3-202ENST00000460593 A0A0G2JQZ4 141 aa7.69□□□□□ -1.18
CPSF3-202ENST00000460593 A0A1W2PNN7 141 aa7.69□□□□□ -1.18
CPSF3-202ENST00000460593 KRTAP10-3P60369 221 aa7.69□□□□□ -1.18
CPSF3-202ENST00000460593 BAHCC1Q9P281 2608 aa7.69□□□□□ -1.18
CPSF3-202ENST00000460593 ERC2-IT1O76042 136 aa7.69□□□□□ -1.18
CPSF3-202ENST00000460593 WFDC10BQ8IUB3 73 aa7.68□□□□□ -1.18
CPSF3-202ENST00000460593 Q8N377 158 aa7.68□□□□□ -1.18
CPSF3-202ENST00000460593 C1orf64Q8NEQ6 169 aa7.68□□□□□ -1.18
CPSF3-202ENST00000460593 UBR5O95071 2799 aaPredicted RBP7.68□□□□□ -1.18
CPSF3-202ENST00000460593 M0R378 163 aa7.68□□□□□ -1.18
CPSF3-202ENST00000460593 PRR34Q9NV39 138 aa7.68□□□□□ -1.18
CPSF3-202ENST00000460593 LELP1Q5T871 98 aa7.67□□□□□ -1.18
CPSF3-202ENST00000460593 Q6ZRP5 223 aa7.67□□□□□ -1.18
CPSF3-202ENST00000460593 NOTCH2Q04721 2471 aa7.67□□□□□ -1.18
CPSF3-202ENST00000460593 RPL37AP8A6NKH3 93 aa7.67□□□□□ -1.18
CPSF3-202ENST00000460593 LYRM9A8MSI8 78 aa7.67□□□□□ -1.18
CPSF3-202ENST00000460593 F8WDY8 70 aa7.67□□□□□ -1.18
CPSF3-202ENST00000460593 SEC61GP60059 68 aa7.67□□□□□ -1.18
CPSF3-202ENST00000460593 GVQW2A0A096LPI5 108 aaPredicted RBP7.67□□□□□ -1.18
CPSF3-202ENST00000460593 A8MU10 97 aa7.67□□□□□ -1.18
CPSF3-202ENST00000460593 H3BQ85 93 aa7.67□□□□□ -1.18
CPSF3-202ENST00000460593 DEFB116Q30KQ4 102 aa7.67□□□□□ -1.18
CPSF3-202ENST00000460593 hDV103S1A0JD37 113 aa7.66□□□□□ -1.18
CPSF3-202ENST00000460593 KPRPQ5T749 579 aaPredicted RBP7.66□□□□□ -1.18
CPSF3-202ENST00000460593 ST20-AS1Q8NBB2 130 aa7.66□□□□□ -1.18
CPSF3-202ENST00000460593 A0A1W2PNM2 257 aa7.66□□□□□ -1.18
CPSF3-202ENST00000460593 SERTAD4-AS1Q5TG53 156 aa7.65□□□□□ -1.18
CPSF3-202ENST00000460593 ATRQ13535 2644 aa7.64□□□□□ -1.19
CPSF3-202ENST00000460593 K7EQZ3 153 aa7.64□□□□□ -1.19
CPSF3-202ENST00000460593 C15orf56Q8N910 161 aa7.63□□□□□ -1.19
CPSF3-202ENST00000460593 Q8NAQ8 132 aa7.62□□□□□ -1.19
CPSF3-202ENST00000460593 FAM168BA1KXE4 195 aa7.62□□□□□ -1.19
CPSF3-202ENST00000460593 IGLV2-33A0A075B6J2 118 aaPredicted RBP7.61□□□□□ -1.19
CPSF3-202ENST00000460593 C7orf33Q8WU49 177 aa7.61□□□□□ -1.19
CPSF3-202ENST00000460593 EGFEM1PQ0D2K5 195 aa7.61□□□□□ -1.19
CPSF3-202ENST00000460593 DSCR10P59022 87 aa7.61□□□□□ -1.19
CPSF3-202ENST00000460593 SMR3AQ99954 134 aa7.61□□□□□ -1.19
CPSF3-202ENST00000460593 C1orf137Q5JT78 98 aa7.6□□□□□ -1.19
CPSF3-202ENST00000460593 NKAPP1Q8N9T2 125 aa7.6□□□□□ -1.19
CPSF3-202ENST00000460593 Q9BRP9 147 aa7.6□□□□□ -1.19
CPSF3-202ENST00000460593 TRAV22A0A0B4J277 110 aa7.59□□□□□ -1.19
CPSF3-202ENST00000460593 KRTAP26-1Q6PEX3 210 aa7.59□□□□□ -1.19
CPSF3-202ENST00000460593 IGKV2D-24A0A075B6R9 120 aa7.59□□□□□ -1.2
CPSF3-202ENST00000460593 SPART-AS1P0CW21 52 aa7.59□□□□□ -1.2
CPSF3-202ENST00000460593 TENM3Q9P273 2699 aa7.58□□□□□ -1.2
CPSF3-202ENST00000460593 A8MUN3 132 aa7.58□□□□□ -1.2
CPSF3-202ENST00000460593 WFDC13Q8IUB5 93 aa7.58□□□□□ -1.2
CPSF3-202ENST00000460593 FASNP49327 2511 aaKnown RBP7.58□□□□□ -1.2
CPSF3-202ENST00000460593 IGLV5-48A0A075B6I7 105 aa7.58□□□□□ -1.2
CPSF3-202ENST00000460593 KRTAP1-1Q07627 177 aa7.58□□□□□ -1.2
CPSF3-202ENST00000460593 RETNQ9HD89 108 aa7.57□□□□□ -1.2
CPSF3-202ENST00000460593 ETDCA0A1B0GVM5 59 aa7.57□□□□□ -1.2
CPSF3-202ENST00000460593 ZCCHC13Q8WW36 166 aaKnown RBP7.56□□□□□ -1.2
CPSF3-202ENST00000460593 TENM4Q6N022 2769 aa7.56□□□□□ -1.2
CPSF3-202ENST00000460593 SRRM2Q9UQ35 2752 aaKnown RBP7.56□□□□□ -1.2
CPSF3-202ENST00000460593 OTOGQ6ZRI0 2925 aa7.55□□□□□ -1.2
CPSF3-202ENST00000460593 PMAIP1Q13794 54 aa7.55□□□□□ -1.2
CPSF3-202ENST00000460593 KCNQ1DNQ9H478 68 aa7.55□□□□□ -1.2
CPSF3-202ENST00000460593 RPL37AP61513 92 aaKnown RBP7.54□□□□□ -1.2
CPSF3-202ENST00000460593 SYCNQ0VAF6 134 aa7.54□□□□□ -1.2
CPSF3-202ENST00000460593 Q1T7F1 81 aa7.54□□□□□ -1.2
CPSF3-202ENST00000460593 PRR15Q8IV56 129 aa7.54□□□□□ -1.2
CPSF3-202ENST00000460593 Q8NBF4 154 aa7.54□□□□□ -1.2
CPSF3-202ENST00000460593 LCE6AA0A183 80 aa7.54□□□□□ -1.2
CPSF3-202ENST00000460593 APOC4P55056 127 aa7.53□□□□□ -1.2
CPSF3-202ENST00000460593 HELZ2Q9BYK8 2649 aaKnown RBP7.53□□□□□ -1.2
CPSF3-202ENST00000460593 Q6ZRX8 168 aa7.53□□□□□ -1.2
CPSF3-202ENST00000460593 PSCAO43653 123 aa7.52□□□□□ -1.21
CPSF3-202ENST00000460593 TNP2Q05952 138 aa7.52□□□□□ -1.21
CPSF3-202ENST00000460593 UBE2BP63146 152 aa7.51□□□□□ -1.21
CPSF3-202ENST00000460593 HCG22E2RYF7 251 aa7.51□□□□□ -1.21
CPSF3-202ENST00000460593 CASC10Q5T4H9 136 aa7.51□□□□□ -1.21
CPSF3-202ENST00000460593 CSMD3Q7Z407 3707 aa7.51□□□□□ -1.21
CPSF3-202ENST00000460593 LINC00208Q96KT6 92 aa7.51□□□□□ -1.21
CPSF3-202ENST00000460593 KRTAP7-1Q8IUC3 87 aa7.5□□□□□ -1.21
CPSF3-202ENST00000460593 LINC00476Q8WZB0 136 aa7.48□□□□□ -1.21
CPSF3-202ENST00000460593 FLNBO75369 2602 aaKnown RBP7.48□□□□□ -1.21
CPSF3-202ENST00000460593 KRTAP4-16G5E9R7 235 aaPredicted RBP7.48□□□□□ -1.21
CPSF3-202ENST00000460593 DHRS4-AS1Q9P1J3 65 aa7.48□□□□□ -1.21
CPSF3-202ENST00000460593 SPRR4Q96PI1 79 aa7.47□□□□□ -1.21
CPSF3-202ENST00000460593 IGLV1-50A0A075B6I6 118 aa7.47□□□□□ -1.21
CPSF3-202ENST00000460593 Q5VV11 94 aa7.47□□□□□ -1.21
CPSF3-202ENST00000460593 A0A087WSZ3 146 aa7.46□□□□□ -1.22
CPSF3-202ENST00000460593 HECTD1Q9ULT8 2610 aa7.45□□□□□ -1.22
CPSF3-202ENST00000460593 ANK2Q01484 3957 aa7.45□□□□□ -1.22
CPSF3-202ENST00000460593 FBN1P35555 2871 aaKnown RBP7.45□□□□□ -1.22
CPSF3-202ENST00000460593 CHKB-CPT1BH3BT56 60 aa7.45□□□□□ -1.22
CPSF3-202ENST00000460593 MAST4O15021 2626 aa7.45□□□□□ -1.22
CPSF3-202ENST00000460593 SPTSSBQ8NFR3 76 aa7.45□□□□□ -1.22
CPSF3-202ENST00000460593 B9D2Q9BPU9 175 aa7.45□□□□□ -1.22
CPSF3-202ENST00000460593 CYP4F30PQ9H0H9 118 aa7.45□□□□□ -1.22
CPSF3-202ENST00000460593 IGFL1Q6UW32 110 aa7.44□□□□□ -1.22
CPSF3-202ENST00000460593 PRLHP81277 87 aa7.44□□□□□ -1.22
CPSF3-202ENST00000460593 PRR15LQ9BU68 103 aa7.43□□□□□ -1.22
CPSF3-202ENST00000460593 MP68P56378 58 aa7.42□□□□□ -1.22
CPSF3-202ENST00000460593 NOTCH1P46531 2555 aa7.41□□□□□ -1.22
CPSF3-202ENST00000460593 H0Y9P7 68 aa7.41□□□□□ -1.22
CPSF3-202ENST00000460593 SPRR1AP35321 89 aa7.41□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms