RNA–Protein interactions for RNA: ENST00000455732.5

USP39-208, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 623 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-208ENST00000455732 TYMSOSQ8TAI1 123 aa10.2□□□□□ -0.78
USP39-208ENST00000455732 SPANXDQ9BXN6 97 aa10.2□□□□□ -0.78
USP39-208ENST00000455732 ZNF706Q9Y5V0 76 aaPredicted RBP10.2□□□□□ -0.78
USP39-208ENST00000455732 B5MCH6 92 aa10.19□□□□□ -0.78
USP39-208ENST00000455732 SPRR4Q96PI1 79 aa10.19□□□□□ -0.78
USP39-208ENST00000455732 PPDPFQ9H3Y8 114 aa10.19□□□□□ -0.78
USP39-208ENST00000455732 TRAV23DV6A0A075B6W5 121 aa10.18□□□□□ -0.78
USP39-208ENST00000455732 SMCR5Q8TEV8 140 aa10.18□□□□□ -0.78
USP39-208ENST00000455732 CBY1Q9Y3M2 126 aa10.18□□□□□ -0.78
USP39-208ENST00000455732 Q6ZRX8 168 aa10.17□□□□□ -0.78
USP39-208ENST00000455732 PCP2Q8IVA1 136 aa10.17□□□□□ -0.78
USP39-208ENST00000455732 LPAP08519 4548 aa10.16□□□□□ -0.78
USP39-208ENST00000455732 C5orf52A6NGY3 159 aa10.16□□□□□ -0.78
USP39-208ENST00000455732 Q6ZVH6 145 aa10.16□□□□□ -0.78
USP39-208ENST00000455732 COPS9Q8WXC6 57 aa10.16□□□□□ -0.78
USP39-208ENST00000455732 ZNF73O43830 326 aaPredicted RBP10.15□□□□□ -0.78
USP39-208ENST00000455732 IFITM1P13164 125 aa10.14□□□□□ -0.79
USP39-208ENST00000455732 LINC00518Q8N0U6 118 aa10.14□□□□□ -0.79
USP39-208ENST00000455732 HSBP1L1C9JCN9 74 aa10.13□□□□□ -0.79
USP39-208ENST00000455732 Q9BRP9 147 aa10.13□□□□□ -0.79
USP39-208ENST00000455732 JOSD1Q15040 202 aaPredicted RBP10.12□□□□□ -0.79
USP39-208ENST00000455732 LINC00483Q53H64 154 aa10.12□□□□□ -0.79
USP39-208ENST00000455732 OR13C6PQ8NH95 151 aa10.11□□□□□ -0.79
USP39-208ENST00000455732 ERC2-IT1O76042 136 aa10.1□□□□□ -0.79
USP39-208ENST00000455732 LINC00304Q8N9R0 145 aa10.1□□□□□ -0.79
USP39-208ENST00000455732 CTAG1AP78358 180 aa10.09□□□□□ -0.79
USP39-208ENST00000455732 C3orf22Q8N5N4 141 aa10.09□□□□□ -0.79
USP39-208ENST00000455732 HINT1P49773 126 aaPredicted RBP10.08□□□□□ -0.8
USP39-208ENST00000455732 TSPAN13O95857 204 aa10.07□□□□□ -0.8
USP39-208ENST00000455732 SCGB1D1O95968 90 aa10.07□□□□□ -0.8
USP39-208ENST00000455732 MUSTN1Q8IVN3 82 aa10.07□□□□□ -0.8
USP39-208ENST00000455732 GAGE2AQ6NT46 116 aa10.05□□□□□ -0.8
USP39-208ENST00000455732 PRR4Q16378 134 aa10.04□□□□□ -0.8
USP39-208ENST00000455732 ELOF1P60002 83 aaKnown RBP10.03□□□□□ -0.8
USP39-208ENST00000455732 DHRS4-AS1Q9P1J3 65 aa10.03□□□□□ -0.8
USP39-208ENST00000455732 TRBV7-6A0A0J9YX20 115 aa10.02□□□□□ -0.81
USP39-208ENST00000455732 C6orf99Q4VX62 202 aa10.02□□□□□ -0.81
USP39-208ENST00000455732 SPAG11AQ6PDA7 123 aa10.02□□□□□ -0.81
USP39-208ENST00000455732 TRAV13-2A0A0B4J235 113 aa10□□□□□ -0.81
USP39-208ENST00000455732 A6NDN8 102 aa10□□□□□ -0.81
USP39-208ENST00000455732 COX8AP10176 69 aa10□□□□□ -0.81
USP39-208ENST00000455732 COX7BP24311 80 aa10□□□□□ -0.81
USP39-208ENST00000455732 Q8NBF4 154 aa9.99□□□□□ -0.81
USP39-208ENST00000455732 DLEU1O43261 78 aa9.98□□□□□ -0.81
USP39-208ENST00000455732 ST20-AS1Q8NBB2 130 aa9.98□□□□□ -0.81
USP39-208ENST00000455732 A0A1B0GWB2 263 aa9.97□□□□□ -0.81
USP39-208ENST00000455732 SPRR1BP22528 89 aa9.97□□□□□ -0.81
USP39-208ENST00000455732 MOBPQ13875 183 aa9.96□□□□□ -0.82
USP39-208ENST00000455732 SSBP3-AS1Q7Z2R9 100 aa9.96□□□□□ -0.82
USP39-208ENST00000455732 IGLV9-49A0A0B4J1Y8 123 aa9.95□□□□□ -0.82
USP39-208ENST00000455732 C4orf48Q5BLP8 95 aa9.95□□□□□ -0.82
USP39-208ENST00000455732 A4D1N5 150 aa9.94□□□□□ -0.82
USP39-208ENST00000455732 SPINK1P00995 79 aa9.93□□□□□ -0.82
USP39-208ENST00000455732 SPATA45Q537H7 98 aa9.93□□□□□ -0.82
USP39-208ENST00000455732 SMIM11BQ8TCY0 68 aa9.93□□□□□ -0.82
USP39-208ENST00000455732 RETNLBQ9BQ08 111 aa9.93□□□□□ -0.82
USP39-208ENST00000455732 PAM16Q9Y3D7 125 aa9.93□□□□□ -0.82
USP39-208ENST00000455732 SLC25A34Q6PIV7 304 aa9.92□□□□□ -0.82
USP39-208ENST00000455732 HIST1H4GQ99525 98 aa9.92□□□□□ -0.82
USP39-208ENST00000455732 VAMP8Q9BV40 100 aa9.92□□□□□ -0.82
USP39-208ENST00000455732 RPS29P62273 56 aaKnown RBP9.91□□□□□ -0.82
USP39-208ENST00000455732 C14orf144Q96I85 54 aa9.9□□□□□ -0.82
USP39-208ENST00000455732 HIGD1BQ9P298 99 aa9.9□□□□□ -0.82
USP39-208ENST00000455732 C9orf153Q5TBE3 101 aa9.89□□□□□ -0.83
USP39-208ENST00000455732 NHP2Q9NX24 153 aaKnown RBP9.88□□□□□ -0.83
USP39-208ENST00000455732 IGLV5-48A0A075B6I7 105 aa9.87□□□□□ -0.83
USP39-208ENST00000455732 TEX49A0A1B0GTD5 131 aa9.87□□□□□ -0.83
USP39-208ENST00000455732 LAMTOR3Q9UHA4 124 aa9.87□□□□□ -0.83
USP39-208ENST00000455732 VAMP3Q15836 100 aa9.86□□□□□ -0.83
USP39-208ENST00000455732 TAL2Q16559 108 aa9.86□□□□□ -0.83
USP39-208ENST00000455732 TPRXLQ17RH7 258 aa9.86□□□□□ -0.83
USP39-208ENST00000455732 FP248Q71RG6 208 aaPredicted RBP9.86□□□□□ -0.83
USP39-208ENST00000455732 IGLV7-46A0A075B6I9 117 aa9.85□□□□□ -0.83
USP39-208ENST00000455732 LINC01547P58512 204 aaPredicted RBP9.85□□□□□ -0.83
USP39-208ENST00000455732 PYY3Q5JQD4 70 aa9.85□□□□□ -0.83
USP39-208ENST00000455732 C2orf91Q6ZV80 131 aa9.85□□□□□ -0.83
USP39-208ENST00000455732 C12orf57Q99622 126 aa9.84□□□□□ -0.83
USP39-208ENST00000455732 DEFB105AQ8NG35 78 aa9.83□□□□□ -0.84
USP39-208ENST00000455732 A0A0U1RQV1 116 aa9.82□□□□□ -0.84
USP39-208ENST00000455732 SLC25A20O43772 301 aa9.82□□□□□ -0.84
USP39-208ENST00000455732 LINC00575Q6W349 94 aa9.82□□□□□ -0.84
USP39-208ENST00000455732 SMIM29Q86T20 159 aa9.82□□□□□ -0.84
USP39-208ENST00000455732 Q8N377 158 aa9.82□□□□□ -0.84
USP39-208ENST00000455732 TMA7Q9Y2S6 64 aaKnown RBP9.82□□□□□ -0.84
USP39-208ENST00000455732 MUC2Q02817 5179 aa9.82□□□□□ -0.84
USP39-208ENST00000455732 A0A0B4J2C4 111 aa9.8□□□□□ -0.84
USP39-208ENST00000455732 CFC1BP0CG36 223 aa9.8□□□□□ -0.84
USP39-208ENST00000455732 CFC1P0CG37 223 aa9.8□□□□□ -0.84
USP39-208ENST00000455732 Q1RN00 199 aa9.8□□□□□ -0.84
USP39-208ENST00000455732 BVES-AS1Q5T3Y7 98 aa9.79□□□□□ -0.84
USP39-208ENST00000455732 hADV29S1A0JD25 119 aa9.77□□□□□ -0.85
USP39-208ENST00000455732 CEND1Q8N111 149 aa9.77□□□□□ -0.85
USP39-208ENST00000455732 RAB37Q96AX2 223 aa9.77□□□□□ -0.85
USP39-208ENST00000455732 PRO1933Q9H354 126 aa9.77□□□□□ -0.85
USP39-208ENST00000455732 CD164Q04900 197 aa9.76□□□□□ -0.85
USP39-208ENST00000455732 TMEM238LA0A1B0GVL6 79 aa9.75□□□□□ -0.85
USP39-208ENST00000455732 A6NJY4 79 aa9.75□□□□□ -0.85
USP39-208ENST00000455732 Q6ZQY7 126 aa9.75□□□□□ -0.85
USP39-208ENST00000455732 CDIP1Q9H305 208 aa9.75□□□□□ -0.85
USP39-208ENST00000455732 LIMD2Q9BT23 127 aa9.74□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 146.4 ms