RNA–Protein interactions for RNA: ENST00000455596.5

HMGB3-205, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene HMGB3, Length 793 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-205ENST00000455596 LITAFQ99732 161 aa12.23□□□□□ -0.45
HMGB3-205ENST00000455596 ZNF815PA8K554 130 aa12.22□□□□□ -0.45
HMGB3-205ENST00000455596 KRTDAPP60985 99 aa12.22□□□□□ -0.45
HMGB3-205ENST00000455596 GAGE2AQ6NT46 116 aa12.22□□□□□ -0.45
HMGB3-205ENST00000455596 Q9BRP9 147 aa12.22□□□□□ -0.45
HMGB3-205ENST00000455596 ERC2-IT1O76042 136 aa12.21□□□□□ -0.45
HMGB3-205ENST00000455596 C4orf48Q5BLP8 95 aa12.21□□□□□ -0.45
HMGB3-205ENST00000455596 LINC00308Q8TCZ7 52 aa12.21□□□□□ -0.45
HMGB3-205ENST00000455596 JOSD1Q15040 202 aaPredicted RBP12.2□□□□□ -0.46
HMGB3-205ENST00000455596 SPANXCQ9NY87 97 aa12.2□□□□□ -0.46
HMGB3-205ENST00000455596 CBY1Q9Y3M2 126 aa12.2□□□□□ -0.46
HMGB3-205ENST00000455596 ZNF73O43830 326 aaPredicted RBP12.19□□□□□ -0.46
HMGB3-205ENST00000455596 Q8NBF4 154 aa12.19□□□□□ -0.46
HMGB3-205ENST00000455596 TTTY13Q9BZ97 58 aa12.18□□□□□ -0.46
HMGB3-205ENST00000455596 C20orf202A1L168 122 aa12.17□□□□□ -0.46
HMGB3-205ENST00000455596 IGLV7-46A0A075B6I9 117 aa12.16□□□□□ -0.46
HMGB3-205ENST00000455596 HINT1P49773 126 aaPredicted RBP12.16□□□□□ -0.46
HMGB3-205ENST00000455596 OR13C6PQ8NH95 151 aa12.16□□□□□ -0.46
HMGB3-205ENST00000455596 IGLV9-49A0A0B4J1Y8 123 aa12.14□□□□□ -0.47
HMGB3-205ENST00000455596 TPRXLQ17RH7 258 aa12.14□□□□□ -0.47
HMGB3-205ENST00000455596 MOBPQ13875 183 aa12.13□□□□□ -0.47
HMGB3-205ENST00000455596 SPINK1P00995 79 aa12.12□□□□□ -0.47
HMGB3-205ENST00000455596 SCGB1D4Q6XE38 83 aa12.12□□□□□ -0.47
HMGB3-205ENST00000455596 SPANXDQ9BXN6 97 aa12.12□□□□□ -0.47
HMGB3-205ENST00000455596 SSBP3-AS1Q7Z2R9 100 aa12.11□□□□□ -0.47
HMGB3-205ENST00000455596 AKR1D1P51857 326 aa12.1□□□□□ -0.47
HMGB3-205ENST00000455596 ANKRD39Q53RE8 183 aa12.1□□□□□ -0.47
HMGB3-205ENST00000455596 LINC00518Q8N0U6 118 aa12.1□□□□□ -0.47
HMGB3-205ENST00000455596 ATOH7Q8N100 152 aa12.1□□□□□ -0.47
HMGB3-205ENST00000455596 CDIP1Q9H305 208 aa12.1□□□□□ -0.47
HMGB3-205ENST00000455596 C5orf52A6NGY3 159 aa12.09□□□□□ -0.47
HMGB3-205ENST00000455596 FP248Q71RG6 208 aaPredicted RBP12.08□□□□□ -0.48
HMGB3-205ENST00000455596 COPS9Q8WXC6 57 aa12.07□□□□□ -0.48
HMGB3-205ENST00000455596 ST20-AS1Q8NBB2 130 aa12.06□□□□□ -0.48
HMGB3-205ENST00000455596 C9orf153Q5TBE3 101 aa12.05□□□□□ -0.48
HMGB3-205ENST00000455596 DHRS4-AS1Q9P1J3 65 aa12.05□□□□□ -0.48
HMGB3-205ENST00000455596 IFITM1P13164 125 aa12.04□□□□□ -0.48
HMGB3-205ENST00000455596 RPS29P62273 56 aaKnown RBP12.04□□□□□ -0.48
HMGB3-205ENST00000455596 Q6ZVH6 145 aa12.03□□□□□ -0.48
HMGB3-205ENST00000455596 COX7BP24311 80 aa12.02□□□□□ -0.49
HMGB3-205ENST00000455596 C6orf99Q4VX62 202 aa12.02□□□□□ -0.49
HMGB3-205ENST00000455596 PCP2Q8IVA1 136 aa12.02□□□□□ -0.49
HMGB3-205ENST00000455596 S100A1P23297 94 aa12.01□□□□□ -0.49
HMGB3-205ENST00000455596 ELOF1P60002 83 aaKnown RBP12.01□□□□□ -0.49
HMGB3-205ENST00000455596 SNRPEP62304 92 aaKnown RBP12.01□□□□□ -0.49
HMGB3-205ENST00000455596 S100A2P29034 98 aa12□□□□□ -0.49
HMGB3-205ENST00000455596 HIST3H2BBQ8N257 126 aa12□□□□□ -0.49
HMGB3-205ENST00000455596 A0A0U1RQV1 116 aa11.99□□□□□ -0.49
HMGB3-205ENST00000455596 SPRR1BP22528 89 aa11.99□□□□□ -0.49
HMGB3-205ENST00000455596 SLC25A34Q6PIV7 304 aa11.99□□□□□ -0.49
HMGB3-205ENST00000455596 MUSTN1Q8IVN3 82 aa11.98□□□□□ -0.49
HMGB3-205ENST00000455596 Q8N377 158 aa11.98□□□□□ -0.49
HMGB3-205ENST00000455596 HIST1H2BLQ99880 126 aa11.97□□□□□ -0.49
HMGB3-205ENST00000455596 A6NDN8 102 aa11.96□□□□□ -0.49
HMGB3-205ENST00000455596 SLC25A20O43772 301 aa11.96□□□□□ -0.49
HMGB3-205ENST00000455596 TRBV7-6A0A0J9YX20 115 aa11.95□□□□□ -0.5
HMGB3-205ENST00000455596 KRTAP13-3Q3SY46 172 aa11.95□□□□□ -0.5
HMGB3-205ENST00000455596 LAMTOR3Q9UHA4 124 aa11.94□□□□□ -0.5
HMGB3-205ENST00000455596 A0A1B0GWB2 263 aa11.93□□□□□ -0.5
HMGB3-205ENST00000455596 S100A6P06703 90 aa11.93□□□□□ -0.5
HMGB3-205ENST00000455596 HSBP1L1C9JCN9 74 aa11.92□□□□□ -0.5
HMGB3-205ENST00000455596 TAL2Q16559 108 aa11.92□□□□□ -0.5
HMGB3-205ENST00000455596 TRAV13-2A0A0B4J235 113 aa11.9□□□□□ -0.5
HMGB3-205ENST00000455596 DEFB105AQ8NG35 78 aa11.9□□□□□ -0.5
HMGB3-205ENST00000455596 TEX49A0A1B0GTD5 131 aa11.88□□□□□ -0.51
HMGB3-205ENST00000455596 MUC2Q02817 5179 aa11.88□□□□□ -0.51
HMGB3-205ENST00000455596 A4D1N5 150 aa11.86□□□□□ -0.51
HMGB3-205ENST00000455596 Q1RN00 199 aa11.86□□□□□ -0.51
HMGB3-205ENST00000455596 HRCT1Q6UXD1 115 aa11.85□□□□□ -0.51
HMGB3-205ENST00000455596 SMIM11BQ8TCY0 68 aa11.85□□□□□ -0.51
HMGB3-205ENST00000455596 LIMD2Q9BT23 127 aa11.85□□□□□ -0.51
HMGB3-205ENST00000455596 NHP2Q9NX24 153 aaKnown RBP11.83□□□□□ -0.52
HMGB3-205ENST00000455596 PRO1933Q9H354 126 aa11.82□□□□□ -0.52
HMGB3-205ENST00000455596 IGLV5-48A0A075B6I7 105 aa11.81□□□□□ -0.52
HMGB3-205ENST00000455596 LINC01547P58512 204 aaPredicted RBP11.81□□□□□ -0.52
HMGB3-205ENST00000455596 SCGB1D1O95968 90 aa11.8□□□□□ -0.52
HMGB3-205ENST00000455596 ASB16-AS1Q495Z4 193 aa11.8□□□□□ -0.52
HMGB3-205ENST00000455596 SMIM29Q86T20 159 aa11.8□□□□□ -0.52
HMGB3-205ENST00000455596 CD164Q04900 197 aa11.79□□□□□ -0.52
HMGB3-205ENST00000455596 VAMP3Q15836 100 aa11.78□□□□□ -0.52
HMGB3-205ENST00000455596 MUC17Q685J3 4493 aa11.78□□□□□ -0.52
HMGB3-205ENST00000455596 SEC61BP60468 96 aaKnown RBP11.77□□□□□ -0.53
HMGB3-205ENST00000455596 H7C2G1 150 aa11.76□□□□□ -0.53
HMGB3-205ENST00000455596 COX8AP10176 69 aa11.73□□□□□ -0.53
HMGB3-205ENST00000455596 HIST1H4GQ99525 98 aa11.73□□□□□ -0.53
HMGB3-205ENST00000455596 XP32Q5T750 250 aa11.72□□□□□ -0.53
HMGB3-205ENST00000455596 LINC00575Q6W349 94 aa11.72□□□□□ -0.53
HMGB3-205ENST00000455596 LCE2AQ5TA79 106 aaPredicted RBP11.7□□□□□ -0.54
HMGB3-205ENST00000455596 A0A0G2JQZ4 141 aa11.68□□□□□ -0.54
HMGB3-205ENST00000455596 hADV29S1A0JD25 119 aa11.68□□□□□ -0.54
HMGB3-205ENST00000455596 DLEU1O43261 78 aa11.68□□□□□ -0.54
HMGB3-205ENST00000455596 Q5XG85 94 aa11.68□□□□□ -0.54
HMGB3-205ENST00000455596 C12orf57Q99622 126 aa11.68□□□□□ -0.54
HMGB3-205ENST00000455596 F8WEM9 126 aa11.67□□□□□ -0.54
HMGB3-205ENST00000455596 Q6ZQY7 126 aa11.66□□□□□ -0.54
HMGB3-205ENST00000455596 BVES-AS1Q5T3Y7 98 aa11.64□□□□□ -0.55
HMGB3-205ENST00000455596 C14orf144Q96I85 54 aa11.63□□□□□ -0.55
HMGB3-205ENST00000455596 KRTAP4-1Q9BYQ7 146 aa11.63□□□□□ -0.55
HMGB3-205ENST00000455596 C9orf92A6NGG3 77 aa11.62□□□□□ -0.55
HMGB3-205ENST00000455596 PAM16Q9Y3D7 125 aa11.62□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms