RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 LRBAP50851 2863 aa2.34□□□□□ -2.03
VPS29-202ENST00000447578 FBN2P35556 2912 aa2.34□□□□□ -2.03
VPS29-202ENST00000447578 NCR3O14931 201 aa2.34□□□□□ -2.03
VPS29-202ENST00000447578 NDUFC2O95298 119 aa2.34□□□□□ -2.03
VPS29-202ENST00000447578 ACYP1P07311 99 aa2.34□□□□□ -2.03
VPS29-202ENST00000447578 INAFM2P0DMQ5 153 aa2.34□□□□□ -2.03
VPS29-202ENST00000447578 COX17Q14061 63 aa2.34□□□□□ -2.03
VPS29-202ENST00000447578 C9orf116Q5BN46 136 aaPredicted RBP2.34□□□□□ -2.03
VPS29-202ENST00000447578 Q6Q795 121 aa2.34□□□□□ -2.03
VPS29-202ENST00000447578 LYPD5Q6UWN5 251 aa2.34□□□□□ -2.03
VPS29-202ENST00000447578 UNQ6190/PRO20217Q6UXQ8 127 aa2.34□□□□□ -2.03
VPS29-202ENST00000447578 ADM2Q7Z4H4 148 aa2.34□□□□□ -2.03
VPS29-202ENST00000447578 LINC00526Q96FQ7 95 aa2.34□□□□□ -2.03
VPS29-202ENST00000447578 KLK5Q9Y337 293 aaPredicted RBP2.34□□□□□ -2.03
VPS29-202ENST00000447578 C22orf24Q9Y442 160 aa2.34□□□□□ -2.03
VPS29-202ENST00000447578 CACNA1AO00555 2505 aa2.34□□□□□ -2.04
VPS29-202ENST00000447578 PIEZO1Q92508 2521 aa2.34□□□□□ -2.04
VPS29-202ENST00000447578 CSPG4Q6UVK1 2322 aa2.34□□□□□ -2.04
VPS29-202ENST00000447578 S100A7L2Q5SY68 101 aa2.33□□□□□ -2.04
VPS29-202ENST00000447578 ENHOQ6UWT2 76 aa2.33□□□□□ -2.04
VPS29-202ENST00000447578 WFDC10BQ8IUB3 73 aa2.33□□□□□ -2.04
VPS29-202ENST00000447578 SMCR5Q8TEV8 140 aa2.33□□□□□ -2.04
VPS29-202ENST00000447578 TMEM126AQ9H061 195 aa2.33□□□□□ -2.04
VPS29-202ENST00000447578 C14orf132Q9NPU4 83 aa2.33□□□□□ -2.04
VPS29-202ENST00000447578 ORMDL1Q9P0S3 153 aa2.33□□□□□ -2.04
VPS29-202ENST00000447578 CHD8Q9HCK8 2581 aa2.32□□□□□ -2.04
VPS29-202ENST00000447578 TRBV7-7A0A0K0K1E9 115 aa2.32□□□□□ -2.04
VPS29-202ENST00000447578 A0A1B0GX51 115 aa2.32□□□□□ -2.04
VPS29-202ENST00000447578 LINC00313P59037 77 aa2.32□□□□□ -2.04
VPS29-202ENST00000447578 LINC00643Q86TS7 51 aa2.32□□□□□ -2.04
VPS29-202ENST00000447578 C3orf56Q8N813 242 aa2.32□□□□□ -2.04
VPS29-202ENST00000447578 Q8N814 137 aa2.32□□□□□ -2.04
VPS29-202ENST00000447578 Q8NDZ9 215 aa2.32□□□□□ -2.04
VPS29-202ENST00000447578 MUC7Q8TAX7 377 aa2.32□□□□□ -2.04
VPS29-202ENST00000447578 C6orf48Q9UBA6 75 aa2.32□□□□□ -2.04
VPS29-202ENST00000447578 LINC00588Q9Y4M8 146 aa2.32□□□□□ -2.04
VPS29-202ENST00000447578 SPG11Q96JI7 2443 aa2.32□□□□□ -2.04
VPS29-202ENST00000447578 ZNF462Q96JM2 2506 aa2.32□□□□□ -2.04
VPS29-202ENST00000447578 SPTBN4Q9H254 2564 aa2.32□□□□□ -2.04
VPS29-202ENST00000447578 GVQW2A0A096LPI5 108 aaPredicted RBP2.31□□□□□ -2.04
VPS29-202ENST00000447578 H3BNG1 76 aa2.31□□□□□ -2.04
VPS29-202ENST00000447578 ESRGQ1W209 222 aa2.31□□□□□ -2.04
VPS29-202ENST00000447578 SDIM1Q6ZPB5 146 aa2.31□□□□□ -2.04
VPS29-202ENST00000447578 OBSCN-AS1Q96MR7 158 aa2.31□□□□□ -2.04
VPS29-202ENST00000447578 XAGE1AQ9HD64 81 aa2.31□□□□□ -2.04
VPS29-202ENST00000447578 USP9XQ93008 2570 aaPredicted RBP2.31□□□□□ -2.04
VPS29-202ENST00000447578 SORL1Q92673 2214 aa2.3□□□□□ -2.04
VPS29-202ENST00000447578 USP24Q9UPU5 2620 aa2.3□□□□□ -2.04
VPS29-202ENST00000447578 ITPR1Q14643 2758 aa2.3□□□□□ -2.04
VPS29-202ENST00000447578 TRAV23DV6A0A075B6W5 121 aa2.3□□□□□ -2.04
VPS29-202ENST00000447578 DEFB131BA0A096LNP1 70 aa2.3□□□□□ -2.04
VPS29-202ENST00000447578 IGKV3D-7A0A0C4DH55 119 aa2.3□□□□□ -2.04
VPS29-202ENST00000447578 FAM236AA0A1B0GUQ0 79 aa2.3□□□□□ -2.04
VPS29-202ENST00000447578 FAM236BA0A1B0GV22 79 aa2.3□□□□□ -2.04
VPS29-202ENST00000447578 hADV29S1A0JD25 119 aa2.3□□□□□ -2.04
VPS29-202ENST00000447578 JMJD7-PLA2G4BH0Y9G9 81 aa2.3□□□□□ -2.04
VPS29-202ENST00000447578 CCDC179H3BU77 68 aa2.3□□□□□ -2.04
VPS29-202ENST00000447578 TMEM256-PLSCR3K7ERE1 68 aa2.3□□□□□ -2.04
VPS29-202ENST00000447578 CCKP06307 115 aa2.3□□□□□ -2.04
VPS29-202ENST00000447578 KRTAP26-1Q6PEX3 210 aa2.3□□□□□ -2.04
VPS29-202ENST00000447578 LINC00575Q6W349 94 aa2.3□□□□□ -2.04
VPS29-202ENST00000447578 DIRC1Q969H9 104 aa2.3□□□□□ -2.04
VPS29-202ENST00000447578 IMUPQ9GZP8 106 aa2.3□□□□□ -2.04
VPS29-202ENST00000447578 LINC00846Q9NV44 126 aa2.3□□□□□ -2.04
VPS29-202ENST00000447578 ANK3Q12955 4377 aaKnown RBP2.3□□□□□ -2.04
VPS29-202ENST00000447578 SVEP1Q4LDE5 3571 aa2.29□□□□□ -2.04
VPS29-202ENST00000447578 IGSF10Q6WRI0 2623 aa2.29□□□□□ -2.04
VPS29-202ENST00000447578 ACACBO00763 2458 aa2.29□□□□□ -2.04
VPS29-202ENST00000447578 NAV2Q8IVL1 2488 aa2.29□□□□□ -2.04
VPS29-202ENST00000447578 TRBV10-3A0A0K0K1G6 114 aa2.29□□□□□ -2.04
VPS29-202ENST00000447578 IGLV6-57P01721 117 aa2.29□□□□□ -2.04
VPS29-202ENST00000447578 COX7BP24311 80 aa2.29□□□□□ -2.04
VPS29-202ENST00000447578 LINC01556Q5JQF7 62 aa2.29□□□□□ -2.04
VPS29-202ENST00000447578 Q6JHZ5 121 aa2.29□□□□□ -2.04
VPS29-202ENST00000447578 IGFL1Q6UW32 110 aa2.29□□□□□ -2.04
VPS29-202ENST00000447578 C1orf64Q8NEQ6 169 aa2.29□□□□□ -2.04
VPS29-202ENST00000447578 SS18L2Q9UHA2 77 aa2.29□□□□□ -2.04
VPS29-202ENST00000447578 LAMTOR3Q9UHA4 124 aa2.29□□□□□ -2.04
VPS29-202ENST00000447578 ANKRD17O75179 2603 aaKnown RBP2.29□□□□□ -2.04
VPS29-202ENST00000447578 FAM208BQ5VWN6 2430 aa2.29□□□□□ -2.04
VPS29-202ENST00000447578 ZFHX3Q15911 3703 aa2.28□□□□□ -2.04
VPS29-202ENST00000447578 TRAV10A0A0B4J240 114 aa2.28□□□□□ -2.04
VPS29-202ENST00000447578 M0R378 163 aa2.28□□□□□ -2.04
VPS29-202ENST00000447578 ZNF73O43830 326 aaPredicted RBP2.28□□□□□ -2.04
VPS29-202ENST00000447578 RBM3P98179 157 aaKnown RBP2.28□□□□□ -2.04
VPS29-202ENST00000447578 KRTAP13-2Q52LG2 175 aa2.28□□□□□ -2.04
VPS29-202ENST00000447578 Q6ZQY7 126 aa2.28□□□□□ -2.04
VPS29-202ENST00000447578 POLQO75417 2590 aa2.28□□□□□ -2.04
VPS29-202ENST00000447578 UBR5O95071 2799 aaPredicted RBP2.27□□□□□ -2.05
VPS29-202ENST00000447578 HIST1H4AP62805 103 aaKnown RBP2.27□□□□□ -2.05
VPS29-202ENST00000447578 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP2.27□□□□□ -2.05
VPS29-202ENST00000447578 DSCR8Q96T75 97 aa2.27□□□□□ -2.05
VPS29-202ENST00000447578 CSMD2Q7Z408 3487 aa2.27□□□□□ -2.05
VPS29-202ENST00000447578 PTPN13Q12923 2485 aa2.27□□□□□ -2.05
VPS29-202ENST00000447578 TACC2O95359 2948 aa2.26□□□□□ -2.05
VPS29-202ENST00000447578 A0A087WVE0 104 aa2.26□□□□□ -2.05
VPS29-202ENST00000447578 LOC110117498A0A087WWA1 95 aa2.26□□□□□ -2.05
VPS29-202ENST00000447578 TRBV7-6A0A0J9YX20 115 aa2.26□□□□□ -2.05
VPS29-202ENST00000447578 M0R2N4 97 aa2.26□□□□□ -2.05
VPS29-202ENST00000447578 ATOX1O00244 68 aa2.26□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 129.9 ms