RNA–Protein interactions for RNA: ENST00000434601.7

LINC00539-203, long intergenic non-protein coding RNA 539, humanhuman

TSL 5 BASIC

Gene LINC00539, Length 960 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00539-203ENST00000434601 C22orf24Q9Y442 160 aa7.14□□□□□ -1.27
LINC00539-203ENST00000434601 SPCS1Q9Y6A9 102 aa7.14□□□□□ -1.27
LINC00539-203ENST00000434601 TRAV23DV6A0A075B6W5 121 aa7.13□□□□□ -1.27
LINC00539-203ENST00000434601 A0A1W2PNN7 141 aa7.13□□□□□ -1.27
LINC00539-203ENST00000434601 GAGE10A6NGK3 116 aa7.13□□□□□ -1.27
LINC00539-203ENST00000434601 FAM229AH3BQW9 127 aa7.13□□□□□ -1.27
LINC00539-203ENST00000434601 K7EP34 96 aa7.13□□□□□ -1.27
LINC00539-203ENST00000434601 MRPL55Q7Z7F7 128 aaKnown RBP7.13□□□□□ -1.27
LINC00539-203ENST00000434601 CBY1Q9Y3M2 126 aa7.13□□□□□ -1.27
LINC00539-203ENST00000434601 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP7.13□□□□□ -1.27
LINC00539-203ENST00000434601 FLG2Q5D862 2391 aaPredicted RBP7.13□□□□□ -1.27
LINC00539-203ENST00000434601 PANO1I0J062 215 aa7.12□□□□□ -1.27
LINC00539-203ENST00000434601 KRTAP10-1P60331 282 aa7.12□□□□□ -1.27
LINC00539-203ENST00000434601 TRBV20-1A0A075B6N2 111 aa7.11□□□□□ -1.27
LINC00539-203ENST00000434601 TCL1BO95988 128 aa7.11□□□□□ -1.27
LINC00539-203ENST00000434601 GTF2H5Q6ZYL4 71 aa7.11□□□□□ -1.27
LINC00539-203ENST00000434601 LINC00167Q96N53 147 aa7.11□□□□□ -1.27
LINC00539-203ENST00000434601 PRYO14603 147 aa7.1□□□□□ -1.27
LINC00539-203ENST00000434601 C6orf99Q4VX62 202 aa7.1□□□□□ -1.27
LINC00539-203ENST00000434601 LCE2DQ5TA82 110 aaPredicted RBP7.1□□□□□ -1.27
LINC00539-203ENST00000434601 DIRC1Q969H9 104 aa7.1□□□□□ -1.27
LINC00539-203ENST00000434601 VPS13BQ7Z7G8 4022 aa7.1□□□□□ -1.27
LINC00539-203ENST00000434601 IGLV1-50A0A075B6I6 118 aa7.09□□□□□ -1.27
LINC00539-203ENST00000434601 ZNF73O43830 326 aaPredicted RBP7.09□□□□□ -1.27
LINC00539-203ENST00000434601 ATXN8Q156A1 80 aa7.09□□□□□ -1.27
LINC00539-203ENST00000434601 CLEC2BQ92478 149 aa7.09□□□□□ -1.27
LINC00539-203ENST00000434601 KCNQ1DNQ9H478 68 aa7.09□□□□□ -1.27
LINC00539-203ENST00000434601 A0A087WYN8 130 aa7.08□□□□□ -1.28
LINC00539-203ENST00000434601 RPL37AP8A6NKH3 93 aa7.08□□□□□ -1.28
LINC00539-203ENST00000434601 H0YGX0 51 aa7.08□□□□□ -1.28
LINC00539-203ENST00000434601 LST1O00453 97 aa7.08□□□□□ -1.28
LINC00539-203ENST00000434601 SMR3BP02814 79 aaPredicted RBP7.08□□□□□ -1.28
LINC00539-203ENST00000434601 PHF5AQ7RTV0 110 aaKnown RBP7.08□□□□□ -1.28
LINC00539-203ENST00000434601 DPH3Q96FX2 82 aa7.08□□□□□ -1.28
LINC00539-203ENST00000434601 UBE2V1Q13404 147 aa7.07□□□□□ -1.28
LINC00539-203ENST00000434601 TRBV7-6A0A0J9YX20 115 aa7.06□□□□□ -1.28
LINC00539-203ENST00000434601 H3BMG7 143 aa7.06□□□□□ -1.28
LINC00539-203ENST00000434601 UBE2BP63146 152 aa7.06□□□□□ -1.28
LINC00539-203ENST00000434601 FAM218AQ96MZ4 157 aa7.06□□□□□ -1.28
LINC00539-203ENST00000434601 PLAC8Q9NZF1 115 aa7.06□□□□□ -1.28
LINC00539-203ENST00000434601 MYCBP2O75592 4640 aa7.05□□□□□ -1.28
LINC00539-203ENST00000434601 COX7BP24311 80 aa7.05□□□□□ -1.28
LINC00539-203ENST00000434601 SPRR1AP35321 89 aa7.05□□□□□ -1.28
LINC00539-203ENST00000434601 ELOF1P60002 83 aaKnown RBP7.05□□□□□ -1.28
LINC00539-203ENST00000434601 Q6ZSA8 131 aa7.05□□□□□ -1.28
LINC00539-203ENST00000434601 DNAH8Q96JB1 4490 aa7.04□□□□□ -1.28
LINC00539-203ENST00000434601 J3QL48 77 aa7.04□□□□□ -1.28
LINC00539-203ENST00000434601 TRACP01848 142 aa7.04□□□□□ -1.28
LINC00539-203ENST00000434601 REG3GQ6UW15 175 aa7.04□□□□□ -1.28
LINC00539-203ENST00000434601 ETDCA0A1B0GVM5 59 aa7.03□□□□□ -1.28
LINC00539-203ENST00000434601 A0A1B0GX51 115 aa7.03□□□□□ -1.28
LINC00539-203ENST00000434601 KRTAP4-16G5E9R7 235 aaPredicted RBP7.03□□□□□ -1.28
LINC00539-203ENST00000434601 PLA2G1BP04054 148 aaKnown RBP7.03□□□□□ -1.28
LINC00539-203ENST00000434601 FAM30AQ9NZY2 134 aa7.03□□□□□ -1.28
LINC00539-203ENST00000434601 LINC00575Q6W349 94 aa7.02□□□□□ -1.29
LINC00539-203ENST00000434601 LINC00528Q8N1L1 170 aa7.02□□□□□ -1.29
LINC00539-203ENST00000434601 FAT1Q14517 4588 aa7.02□□□□□ -1.29
LINC00539-203ENST00000434601 B5MCH6 92 aa7.01□□□□□ -1.29
LINC00539-203ENST00000434601 C9JAW5 83 aa7.01□□□□□ -1.29
LINC00539-203ENST00000434601 SLC25A20O43772 301 aa7.01□□□□□ -1.29
LINC00539-203ENST00000434601 DNAL4O96015 105 aa7.01□□□□□ -1.29
LINC00539-203ENST00000434601 Q6ZRX8 168 aa7.01□□□□□ -1.29
LINC00539-203ENST00000434601 SCXQ7RTU7 201 aa7.01□□□□□ -1.29
LINC00539-203ENST00000434601 KRTAP11-1Q8IUC1 163 aa7.01□□□□□ -1.29
LINC00539-203ENST00000434601 MTURNQ8N3F0 131 aa7.01□□□□□ -1.29
LINC00539-203ENST00000434601 hADV29S1A0JD25 119 aa7□□□□□ -1.29
LINC00539-203ENST00000434601 SNCGO76070 127 aa7□□□□□ -1.29
LINC00539-203ENST00000434601 HAMPP81172 84 aa7□□□□□ -1.29
LINC00539-203ENST00000434601 CIRBP-AS1Q8TBR5 109 aa7□□□□□ -1.29
LINC00539-203ENST00000434601 PRO0461Q9UI25 63 aa7□□□□□ -1.29
LINC00539-203ENST00000434601 F8W1H4 67 aa6.98□□□□□ -1.29
LINC00539-203ENST00000434601 FAM19A1Q7Z5A9 133 aa6.98□□□□□ -1.29
LINC00539-203ENST00000434601 KRTAP29-1A8MX34 341 aaPredicted RBP6.97□□□□□ -1.29
LINC00539-203ENST00000434601 H3BT86 120 aa6.97□□□□□ -1.29
LINC00539-203ENST00000434601 BCE1O60756 84 aa6.97□□□□□ -1.29
LINC00539-203ENST00000434601 SMCPP49901 116 aaPredicted RBP6.97□□□□□ -1.29
LINC00539-203ENST00000434601 DHRS4-AS1Q9P1J3 65 aa6.97□□□□□ -1.29
LINC00539-203ENST00000434601 PRLHP81277 87 aa6.96□□□□□ -1.3
LINC00539-203ENST00000434601 ANKRD29Q8N6D5 301 aa6.96□□□□□ -1.3
LINC00539-203ENST00000434601 Q9BRP9 147 aa6.96□□□□□ -1.3
LINC00539-203ENST00000434601 ORMDL1Q9P0S3 153 aa6.96□□□□□ -1.3
LINC00539-203ENST00000434601 H0Y9J4 135 aa6.95□□□□□ -1.3
LINC00539-203ENST00000434601 UBE2AP49459 152 aa6.95□□□□□ -1.3
LINC00539-203ENST00000434601 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP6.95□□□□□ -1.3
LINC00539-203ENST00000434601 Q6ZQY7 126 aa6.95□□□□□ -1.3
LINC00539-203ENST00000434601 LINC01600Q96MT4 127 aa6.95□□□□□ -1.3
LINC00539-203ENST00000434601 PSORS1C2Q9UIG4 136 aa6.95□□□□□ -1.3
LINC00539-203ENST00000434601 BAALC-AS2P0C853 105 aa6.94□□□□□ -1.3
LINC00539-203ENST00000434601 SMCR5Q8TEV8 140 aa6.94□□□□□ -1.3
LINC00539-203ENST00000434601 KRTAP13-1Q8IUC0 172 aa6.93□□□□□ -1.3
LINC00539-203ENST00000434601 OCIAD2Q56VL3 154 aa6.92□□□□□ -1.3
LINC00539-203ENST00000434601 C1orf137Q5JT78 98 aa6.92□□□□□ -1.3
LINC00539-203ENST00000434601 HIGD2AQ9BW72 106 aa6.92□□□□□ -1.3
LINC00539-203ENST00000434601 H3BQ85 93 aa6.91□□□□□ -1.3
LINC00539-203ENST00000434601 ERC2-IT1O76042 136 aa6.91□□□□□ -1.3
LINC00539-203ENST00000434601 OXTP01178 125 aa6.91□□□□□ -1.3
LINC00539-203ENST00000434601 GHRHP01286 108 aa6.91□□□□□ -1.3
LINC00539-203ENST00000434601 TMEM256-PLSCR3K7ERE1 68 aa6.9□□□□□ -1.3
LINC00539-203ENST00000434601 ETDBQ3ZM63 59 aa6.9□□□□□ -1.3
LINC00539-203ENST00000434601 TEN1Q86WV5 123 aa6.9□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 61.1 ms