RNA–Protein interactions for RNA: ENST00000433394.1

USP54-206, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 5

Gene USP54, Length 600 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-206ENST00000433394 PRCDQ00LT1 54 aa2.4□□□□□ -2.03
USP54-206ENST00000433394 RPL39P5Q59GN2 51 aa2.4□□□□□ -2.03
USP54-206ENST00000433394 LINC00643Q86TS7 51 aa2.4□□□□□ -2.03
USP54-206ENST00000433394 Q8N814 137 aa2.4□□□□□ -2.03
USP54-206ENST00000433394 CYP4F30PQ9H0H9 118 aa2.4□□□□□ -2.03
USP54-206ENST00000433394 MANBALQ9NQG1 85 aa2.4□□□□□ -2.03
USP54-206ENST00000433394 NDUFA4L2Q9NRX3 87 aa2.4□□□□□ -2.03
USP54-206ENST00000433394 CR1P17927 2039 aa2.4□□□□□ -2.03
USP54-206ENST00000433394 OTOGQ6ZRI0 2925 aa2.4□□□□□ -2.03
USP54-206ENST00000433394 NF1P21359 2839 aa2.4□□□□□ -2.03
USP54-206ENST00000433394 IGKV2D-26A0A0A0MRZ7 120 aa2.39□□□□□ -2.03
USP54-206ENST00000433394 TRAV13-2A0A0B4J235 113 aa2.39□□□□□ -2.03
USP54-206ENST00000433394 IGKV2-29A2NJV5 120 aaPredicted RBP2.39□□□□□ -2.03
USP54-206ENST00000433394 H3BUA1 57 aa2.39□□□□□ -2.03
USP54-206ENST00000433394 TFF1P04155 84 aa2.39□□□□□ -2.03
USP54-206ENST00000433394 PLGLAQ15195 96 aa2.39□□□□□ -2.03
USP54-206ENST00000433394 KLK9Q2XQG4 91 aa2.39□□□□□ -2.03
USP54-206ENST00000433394 CFAP126Q5VTH2 177 aa2.39□□□□□ -2.03
USP54-206ENST00000433394 Q8N6K4 173 aa2.39□□□□□ -2.03
USP54-206ENST00000433394 SPTSSBQ8NFR3 76 aa2.39□□□□□ -2.03
USP54-206ENST00000433394 LEAP2Q969E1 77 aa2.39□□□□□ -2.03
USP54-206ENST00000433394 PSENENQ9NZ42 101 aa2.39□□□□□ -2.03
USP54-206ENST00000433394 KLK9Q9UKQ9 250 aa2.39□□□□□ -2.03
USP54-206ENST00000433394 CELSR1Q9NYQ6 3014 aa2.39□□□□□ -2.03
USP54-206ENST00000433394 HIVEP1P15822 2718 aa2.39□□□□□ -2.03
USP54-206ENST00000433394 F8P00451 2351 aa2.38□□□□□ -2.03
USP54-206ENST00000433394 NIPBLQ6KC79 2804 aaeCLIP2.38□□□□□ -2.03
USP54-206ENST00000433394 TRBV6-5A0A0K0K1A5 114 aa2.38□□□□□ -2.03
USP54-206ENST00000433394 TCRBV4S1A1TA0A5B7 111 aa2.38□□□□□ -2.03
USP54-206ENST00000433394 FAM223BA6NKX1 122 aa2.38□□□□□ -2.03
USP54-206ENST00000433394 C9orf116Q5BN46 136 aaPredicted RBP2.38□□□□□ -2.03
USP54-206ENST00000433394 C1orf134Q5TEV5 83 aa2.38□□□□□ -2.03
USP54-206ENST00000433394 FAM223AQ8IWN6 122 aa2.38□□□□□ -2.03
USP54-206ENST00000433394 TMEM254Q8TBM7 123 aa2.38□□□□□ -2.03
USP54-206ENST00000433394 HILPDAQ9Y5L2 63 aa2.38□□□□□ -2.03
USP54-206ENST00000433394 ARL2-SNX15V9GYD0 113 aa2.38□□□□□ -2.03
USP54-206ENST00000433394 CSMD2Q7Z408 3487 aa2.38□□□□□ -2.03
USP54-206ENST00000433394 ATRQ13535 2644 aa2.38□□□□□ -2.03
USP54-206ENST00000433394 JMJD1CQ15652 2540 aa2.37□□□□□ -2.03
USP54-206ENST00000433394 TRBV7-1A0A0A6YYK4 115 aa2.37□□□□□ -2.03
USP54-206ENST00000433394 IGLV1-51P01701 117 aa2.37□□□□□ -2.03
USP54-206ENST00000433394 FXYD3Q14802 87 aa2.37□□□□□ -2.03
USP54-206ENST00000433394 ZNF56Q15929 161 aa2.37□□□□□ -2.03
USP54-206ENST00000433394 Q6ZRN7 208 aaPredicted RBP2.37□□□□□ -2.03
USP54-206ENST00000433394 C5orf56Q8N8D9 126 aa2.37□□□□□ -2.03
USP54-206ENST00000433394 USMG5Q96IX5 58 aa2.37□□□□□ -2.03
USP54-206ENST00000433394 HIGD1BQ9P298 99 aa2.37□□□□□ -2.03
USP54-206ENST00000433394 LINC00474Q9P2X8 69 aa2.37□□□□□ -2.03
USP54-206ENST00000433394 C2CD3Q4AC94 2353 aa2.37□□□□□ -2.03
USP54-206ENST00000433394 VPS13CQ709C8 3753 aa2.36□□□□□ -2.03
USP54-206ENST00000433394 NBPF19A0A087WUL8 3843 aa2.36□□□□□ -2.03
USP54-206ENST00000433394 BAALC-AS2P0C853 105 aa2.36□□□□□ -2.03
USP54-206ENST00000433394 IAPPP10997 89 aa2.36□□□□□ -2.03
USP54-206ENST00000433394 ROMO1P60602 79 aa2.36□□□□□ -2.03
USP54-206ENST00000433394 WT1-ASQ06250 92 aa2.36□□□□□ -2.03
USP54-206ENST00000433394 Q6ZQT0 140 aa2.36□□□□□ -2.03
USP54-206ENST00000433394 FAM19A2Q8N3H0 131 aa2.36□□□□□ -2.03
USP54-206ENST00000433394 ODF3Q96PU9 254 aa2.36□□□□□ -2.03
USP54-206ENST00000433394 PRO1854Q9UHT4 67 aa2.36□□□□□ -2.03
USP54-206ENST00000433394 FBN1P35555 2871 aaKnown RBP2.36□□□□□ -2.03
USP54-206ENST00000433394 FN1P02751 2386 aaKnown RBP2.36□□□□□ -2.03
USP54-206ENST00000433394 CTXND1A0A1B0GTU2 59 aa2.35□□□□□ -2.03
USP54-206ENST00000433394 HCG22E2RYF7 251 aa2.35□□□□□ -2.03
USP54-206ENST00000433394 H3BUX3 64 aa2.35□□□□□ -2.03
USP54-206ENST00000433394 ERC2-IT1O76042 136 aa2.35□□□□□ -2.03
USP54-206ENST00000433394 PRH1P02810 166 aa2.35□□□□□ -2.03
USP54-206ENST00000433394 COX6CP09669 75 aa2.35□□□□□ -2.03
USP54-206ENST00000433394 PRB4P10163 310 aaPredicted RBP2.35□□□□□ -2.03
USP54-206ENST00000433394 COX8AP10176 69 aa2.35□□□□□ -2.03
USP54-206ENST00000433394 C2orf82Q6UX34 121 aa2.35□□□□□ -2.03
USP54-206ENST00000433394 BAGE3Q86Y29 109 aa2.35□□□□□ -2.03
USP54-206ENST00000433394 BAGE2Q86Y30 109 aa2.35□□□□□ -2.03
USP54-206ENST00000433394 LINC01600Q96MT4 127 aa2.35□□□□□ -2.03
USP54-206ENST00000433394 TMEM167BQ9NRX6 74 aa2.35□□□□□ -2.03
USP54-206ENST00000433394 GNG13Q9P2W3 67 aa2.35□□□□□ -2.03
USP54-206ENST00000433394 CSMD1Q96PZ7 3565 aa2.35□□□□□ -2.03
USP54-206ENST00000433394 TEP1Q99973 2627 aaKnown RBP2.35□□□□□ -2.03
USP54-206ENST00000433394 E7EUB6 86 aa2.34□□□□□ -2.03
USP54-206ENST00000433394 I3L2K1 104 aa2.34□□□□□ -2.03
USP54-206ENST00000433394 PDE6HQ13956 83 aa2.34□□□□□ -2.03
USP54-206ENST00000433394 DEFB112Q30KQ8 113 aa2.34□□□□□ -2.03
USP54-206ENST00000433394 CDC42SE1Q9NRR8 79 aa2.34□□□□□ -2.03
USP54-206ENST00000433394 TMEM14CQ9P0S9 112 aa2.34□□□□□ -2.03
USP54-206ENST00000433394 AKAP9Q99996 3911 aa2.34□□□□□ -2.04
USP54-206ENST00000433394 TRAV10A0A0B4J240 114 aa2.33□□□□□ -2.04
USP54-206ENST00000433394 ZNF815PA8K554 130 aa2.33□□□□□ -2.04
USP54-206ENST00000433394 H7BZZ5 65 aa2.33□□□□□ -2.04
USP54-206ENST00000433394 K7EIM0 57 aa2.33□□□□□ -2.04
USP54-206ENST00000433394 NDUFA4O00483 81 aa2.33□□□□□ -2.04
USP54-206ENST00000433394 KLKP1Q107X0 134 aa2.33□□□□□ -2.04
USP54-206ENST00000433394 KRTAP21-3Q3LHN1 58 aa2.33□□□□□ -2.04
USP54-206ENST00000433394 C10orf55Q5SWW7 151 aa2.33□□□□□ -2.04
USP54-206ENST00000433394 C10orf113Q5VZT2 155 aa2.33□□□□□ -2.04
USP54-206ENST00000433394 FAM167A-AS1Q96KT0 104 aa2.33□□□□□ -2.04
USP54-206ENST00000433394 LIMD2Q9BT23 127 aa2.33□□□□□ -2.04
USP54-206ENST00000433394 ZNF469Q96JG9 3925 aaPredicted RBP2.33□□□□□ -2.04
USP54-206ENST00000433394 SVEP1Q4LDE5 3571 aa2.33□□□□□ -2.04
USP54-206ENST00000433394 WNK1Q9H4A3 2382 aa2.32□□□□□ -2.04
USP54-206ENST00000433394 COL6A5A8TX70 2615 aa2.32□□□□□ -2.04
USP54-206ENST00000433394 TRAV23DV6A0A075B6W5 121 aa2.32□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 70.3 ms