RNA–Protein interactions for RNA: ENST00000430104.5

SHH-202, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 677 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-202ENST00000430104 B5MCH6 92 aa11.07□□□□□ -0.64
SHH-202ENST00000430104 CRYGAP11844 174 aa11.07□□□□□ -0.64
SHH-202ENST00000430104 MUSTN1Q8IVN3 82 aa11.07□□□□□ -0.64
SHH-202ENST00000430104 SMCR5Q8TEV8 140 aa11.07□□□□□ -0.64
SHH-202ENST00000430104 IFITM1P13164 125 aa11.06□□□□□ -0.64
SHH-202ENST00000430104 TMA7Q9Y2S6 64 aaKnown RBP11.06□□□□□ -0.64
SHH-202ENST00000430104 LINC00518Q8N0U6 118 aa11.05□□□□□ -0.64
SHH-202ENST00000430104 COPS9Q8WXC6 57 aa11.05□□□□□ -0.64
SHH-202ENST00000430104 Q6ZVH6 145 aa11.04□□□□□ -0.64
SHH-202ENST00000430104 TYMSOSQ8TAI1 123 aa11.04□□□□□ -0.64
SHH-202ENST00000430104 ZNF73O43830 326 aaPredicted RBP11.03□□□□□ -0.64
SHH-202ENST00000430104 FAM229BQ4G0N7 80 aa11.02□□□□□ -0.65
SHH-202ENST00000430104 SPRR4Q96PI1 79 aa11.02□□□□□ -0.65
SHH-202ENST00000430104 CBY1Q9Y3M2 126 aa11.02□□□□□ -0.65
SHH-202ENST00000430104 KRTAP13-2Q52LG2 175 aa11.01□□□□□ -0.65
SHH-202ENST00000430104 Q6ZRX8 168 aa11.01□□□□□ -0.65
SHH-202ENST00000430104 ZNF706Q9Y5V0 76 aaPredicted RBP11.01□□□□□ -0.65
SHH-202ENST00000430104 ERC2-IT1O76042 136 aa11□□□□□ -0.65
SHH-202ENST00000430104 HINT1P49773 126 aaPredicted RBP11□□□□□ -0.65
SHH-202ENST00000430104 Q9BRP9 147 aa11□□□□□ -0.65
SHH-202ENST00000430104 PPDPFQ9H3Y8 114 aa11□□□□□ -0.65
SHH-202ENST00000430104 PAM16Q9Y3D7 125 aa11□□□□□ -0.65
SHH-202ENST00000430104 A6NDN8 102 aa10.99□□□□□ -0.65
SHH-202ENST00000430104 JOSD1Q15040 202 aaPredicted RBP10.99□□□□□ -0.65
SHH-202ENST00000430104 COX8AP10176 69 aa10.98□□□□□ -0.65
SHH-202ENST00000430104 SPATA45Q537H7 98 aa10.98□□□□□ -0.65
SHH-202ENST00000430104 C14orf144Q96I85 54 aa10.98□□□□□ -0.65
SHH-202ENST00000430104 VAMP8Q9BV40 100 aa10.97□□□□□ -0.65
SHH-202ENST00000430104 TSPAN13O95857 204 aa10.96□□□□□ -0.65
SHH-202ENST00000430104 GAGE2AQ6NT46 116 aa10.96□□□□□ -0.65
SHH-202ENST00000430104 C3orf22Q8N5N4 141 aa10.96□□□□□ -0.65
SHH-202ENST00000430104 C6orf99Q4VX62 202 aa10.94□□□□□ -0.66
SHH-202ENST00000430104 HIST1H4GQ99525 98 aa10.94□□□□□ -0.66
SHH-202ENST00000430104 TRAV13-2A0A0B4J235 113 aa10.92□□□□□ -0.66
SHH-202ENST00000430104 A4D1N5 150 aa10.92□□□□□ -0.66
SHH-202ENST00000430104 COX7BP24311 80 aa10.92□□□□□ -0.66
SHH-202ENST00000430104 HMCN2Q8NDA2 5059 aa10.92□□□□□ -0.66
SHH-202ENST00000430104 DLEU1O43261 78 aa10.91□□□□□ -0.66
SHH-202ENST00000430104 ST20-AS1Q8NBB2 130 aa10.9□□□□□ -0.66
SHH-202ENST00000430104 PYY3Q5JQD4 70 aa10.89□□□□□ -0.67
SHH-202ENST00000430104 SLC25A34Q6PIV7 304 aa10.89□□□□□ -0.67
SHH-202ENST00000430104 LINC00304Q8N9R0 145 aa10.89□□□□□ -0.67
SHH-202ENST00000430104 ELOF1P60002 83 aaKnown RBP10.88□□□□□ -0.67
SHH-202ENST00000430104 LINC00483Q53H64 154 aa10.88□□□□□ -0.67
SHH-202ENST00000430104 C12orf57Q99622 126 aa10.88□□□□□ -0.67
SHH-202ENST00000430104 DHRS4-AS1Q9P1J3 65 aa10.88□□□□□ -0.67
SHH-202ENST00000430104 IGLV9-49A0A0B4J1Y8 123 aa10.87□□□□□ -0.67
SHH-202ENST00000430104 SMIM11BQ8TCY0 68 aa10.87□□□□□ -0.67
SHH-202ENST00000430104 TRBV7-6A0A0J9YX20 115 aa10.84□□□□□ -0.67
SHH-202ENST00000430104 A0A1B0GWB2 263 aa10.84□□□□□ -0.67
SHH-202ENST00000430104 HIGD1BQ9P298 99 aa10.84□□□□□ -0.67
SHH-202ENST00000430104 PRR4Q16378 134 aa10.83□□□□□ -0.68
SHH-202ENST00000430104 C2orf91Q6ZV80 131 aa10.83□□□□□ -0.68
SHH-202ENST00000430104 MOBPQ13875 183 aa10.82□□□□□ -0.68
SHH-202ENST00000430104 Q8NBF4 154 aa10.82□□□□□ -0.68
SHH-202ENST00000430104 DEFB105AQ8NG35 78 aa10.81□□□□□ -0.68
SHH-202ENST00000430104 TAL2Q16559 108 aa10.8□□□□□ -0.68
SHH-202ENST00000430104 C4orf48Q5BLP8 95 aa10.8□□□□□ -0.68
SHH-202ENST00000430104 C9orf153Q5TBE3 101 aa10.79□□□□□ -0.68
SHH-202ENST00000430104 VAMP3Q15836 100 aa10.78□□□□□ -0.68
SHH-202ENST00000430104 H7C2G1 150 aa10.77□□□□□ -0.69
SHH-202ENST00000430104 SPAG11AQ6PDA7 123 aa10.77□□□□□ -0.69
SHH-202ENST00000430104 RETNLBQ9BQ08 111 aa10.77□□□□□ -0.69
SHH-202ENST00000430104 CFC1BP0CG36 223 aa10.76□□□□□ -0.69
SHH-202ENST00000430104 CFC1P0CG37 223 aa10.76□□□□□ -0.69
SHH-202ENST00000430104 SSBP3-AS1Q7Z2R9 100 aa10.76□□□□□ -0.69
SHH-202ENST00000430104 RAB37Q96AX2 223 aa10.76□□□□□ -0.69
SHH-202ENST00000430104 SPRR1BP22528 89 aa10.75□□□□□ -0.69
SHH-202ENST00000430104 CEND1Q8N111 149 aa10.75□□□□□ -0.69
SHH-202ENST00000430104 NHP2Q9NX24 153 aaKnown RBP10.74□□□□□ -0.69
SHH-202ENST00000430104 SLC25A20O43772 301 aa10.73□□□□□ -0.69
SHH-202ENST00000430104 LAMTOR3Q9UHA4 124 aa10.73□□□□□ -0.69
SHH-202ENST00000430104 TEX49A0A1B0GTD5 131 aa10.72□□□□□ -0.69
SHH-202ENST00000430104 Q1RN00 199 aa10.72□□□□□ -0.69
SHH-202ENST00000430104 LINC00575Q6W349 94 aa10.71□□□□□ -0.69
SHH-202ENST00000430104 A0A0B4J2C4 111 aa10.7□□□□□ -0.7
SHH-202ENST00000430104 TMEM238LA0A1B0GVL6 79 aa10.69□□□□□ -0.7
SHH-202ENST00000430104 A6NJY4 79 aa10.69□□□□□ -0.7
SHH-202ENST00000430104 FXYD2P54710 66 aa10.69□□□□□ -0.7
SHH-202ENST00000430104 LINC01547P58512 204 aaPredicted RBP10.69□□□□□ -0.7
SHH-202ENST00000430104 CTAG1AP78358 180 aa10.69□□□□□ -0.7
SHH-202ENST00000430104 UQCR10Q9UDW1 63 aa10.69□□□□□ -0.7
SHH-202ENST00000430104 hADV29S1A0JD25 119 aa10.68□□□□□ -0.7
SHH-202ENST00000430104 SPINK1P00995 79 aa10.68□□□□□ -0.7
SHH-202ENST00000430104 BVES-AS1Q5T3Y7 98 aa10.68□□□□□ -0.7
SHH-202ENST00000430104 IGLV5-48A0A075B6I7 105 aa10.67□□□□□ -0.7
SHH-202ENST00000430104 HSD52Q0P140 79 aa10.67□□□□□ -0.7
SHH-202ENST00000430104 HRCT1Q6UXD1 115 aa10.65□□□□□ -0.7
SHH-202ENST00000430104 SMIM29Q86T20 159 aa10.65□□□□□ -0.7
SHH-202ENST00000430104 Q8N377 158 aa10.65□□□□□ -0.7
SHH-202ENST00000430104 PRO1854Q9UHT4 67 aa10.65□□□□□ -0.7
SHH-202ENST00000430104 LRP2P98164 4655 aa10.64□□□□□ -0.71
SHH-202ENST00000430104 Q6ZQY7 126 aa10.64□□□□□ -0.71
SHH-202ENST00000430104 LPAP08519 4548 aa10.63□□□□□ -0.71
SHH-202ENST00000430104 PRO1933Q9H354 126 aa10.63□□□□□ -0.71
SHH-202ENST00000430104 UBR4Q5T4S7 5183 aa10.62□□□□□ -0.71
SHH-202ENST00000430104 IGLV7-46A0A075B6I9 117 aa10.62□□□□□ -0.71
SHH-202ENST00000430104 K7ERJ3 54 aa10.59□□□□□ -0.71
SHH-202ENST00000430104 A0A0G2JQZ4 141 aa10.58□□□□□ -0.72
SHH-202ENST00000430104 H0YGX0 51 aa10.58□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 91.4 ms