RNA–Protein interactions for RNA: ENST00000424265.5

USP54-205, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 5,201 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-205ENST00000424265 LINC00167Q96N53 147 aa6.65□□□□□ -1.34
USP54-205ENST00000424265 A8MU10 97 aa6.65□□□□□ -1.35
USP54-205ENST00000424265 LOC101927531A0A1B0GV80 90 aa6.64□□□□□ -1.35
USP54-205ENST00000424265 C3orf84H3BNL1 204 aa6.64□□□□□ -1.35
USP54-205ENST00000424265 GIG44P09565 113 aaPredicted RBP6.64□□□□□ -1.35
USP54-205ENST00000424265 Q75L30 129 aa6.64□□□□□ -1.35
USP54-205ENST00000424265 LINC00313P59037 77 aa6.64□□□□□ -1.35
USP54-205ENST00000424265 LINC00575Q6W349 94 aa6.64□□□□□ -1.35
USP54-205ENST00000424265 KALRNO60229 2985 aa6.64□□□□□ -1.35
USP54-205ENST00000424265 CDC42SE2Q9NRR3 84 aa6.64□□□□□ -1.35
USP54-205ENST00000424265 GCN1Q92616 2671 aaKnown RBP6.63□□□□□ -1.35
USP54-205ENST00000424265 IGLV10-54A0A075B6I4 117 aa6.63□□□□□ -1.35
USP54-205ENST00000424265 PRAC1Q96KF2 57 aa6.63□□□□□ -1.35
USP54-205ENST00000424265 MYO15AQ9UKN7 3530 aa6.62□□□□□ -1.35
USP54-205ENST00000424265 WWC2-AS2Q96NR7 200 aa6.62□□□□□ -1.35
USP54-205ENST00000424265 MUC3AQ02505 3323 aa6.62□□□□□ -1.35
USP54-205ENST00000424265 IGKV4-1P06312 121 aa6.62□□□□□ -1.35
USP54-205ENST00000424265 LINC00959A0A1B0GUT2 108 aa6.61□□□□□ -1.35
USP54-205ENST00000424265 Q6ZSN1 163 aa6.61□□□□□ -1.35
USP54-205ENST00000424265 ATMQ13315 3056 aa6.61□□□□□ -1.35
USP54-205ENST00000424265 M0R2N4 97 aa6.61□□□□□ -1.35
USP54-205ENST00000424265 ELOF1P60002 83 aaKnown RBP6.61□□□□□ -1.35
USP54-205ENST00000424265 MOBPQ13875 183 aa6.61□□□□□ -1.35
USP54-205ENST00000424265 APCP25054 2843 aa6.61□□□□□ -1.35
USP54-205ENST00000424265 LINC01556Q5JQF7 62 aa6.6□□□□□ -1.35
USP54-205ENST00000424265 BOD1L1Q8NFC6 3051 aa6.6□□□□□ -1.35
USP54-205ENST00000424265 PRR3P79522 188 aaKnown RBP6.6□□□□□ -1.35
USP54-205ENST00000424265 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP6.59□□□□□ -1.35
USP54-205ENST00000424265 Q8N9P0 234 aaPredicted RBP6.59□□□□□ -1.35
USP54-205ENST00000424265 ATRQ13535 2644 aa6.58□□□□□ -1.36
USP54-205ENST00000424265 IGLV4-60A0A075B6I1 120 aa6.57□□□□□ -1.36
USP54-205ENST00000424265 IGLV2-33A0A075B6J2 118 aaPredicted RBP6.57□□□□□ -1.36
USP54-205ENST00000424265 CYSRT1A8MQ03 144 aa6.57□□□□□ -1.36
USP54-205ENST00000424265 Q8IZM0 81 aa6.57□□□□□ -1.36
USP54-205ENST00000424265 UTP20O75691 2785 aaKnown RBP6.56□□□□□ -1.36
USP54-205ENST00000424265 LY6G6CO95867 125 aa6.56□□□□□ -1.36
USP54-205ENST00000424265 C10orf25Q5T742 122 aa6.56□□□□□ -1.36
USP54-205ENST00000424265 SPAG11AQ6PDA7 123 aa6.56□□□□□ -1.36
USP54-205ENST00000424265 DEFB105AQ8NG35 78 aa6.56□□□□□ -1.36
USP54-205ENST00000424265 COL12A1Q99715 3063 aa6.55□□□□□ -1.36
USP54-205ENST00000424265 COX17Q14061 63 aa6.55□□□□□ -1.36
USP54-205ENST00000424265 ITPR2Q14571 2701 aa6.55□□□□□ -1.36
USP54-205ENST00000424265 NBEAQ8NFP9 2946 aa6.54□□□□□ -1.36
USP54-205ENST00000424265 TEX15Q9BXT5 2789 aa6.54□□□□□ -1.36
USP54-205ENST00000424265 FAM104AQ969W3 186 aa6.53□□□□□ -1.36
USP54-205ENST00000424265 WFDC10BQ8IUB3 73 aa6.53□□□□□ -1.36
USP54-205ENST00000424265 H0Y9J4 135 aa6.53□□□□□ -1.36
USP54-205ENST00000424265 COA5Q86WW8 74 aa6.53□□□□□ -1.36
USP54-205ENST00000424265 WFDC13Q8IUB5 93 aa6.53□□□□□ -1.36
USP54-205ENST00000424265 MAST4O15021 2626 aa6.52□□□□□ -1.37
USP54-205ENST00000424265 ADGRG4Q8IZF6 3080 aa6.52□□□□□ -1.37
USP54-205ENST00000424265 Q9BRP9 147 aa6.52□□□□□ -1.37
USP54-205ENST00000424265 MUC4Q99102 2169 aa6.52□□□□□ -1.37
USP54-205ENST00000424265 C1orf134Q5TEV5 83 aa6.52□□□□□ -1.37
USP54-205ENST00000424265 H0Y9P7 68 aa6.51□□□□□ -1.37
USP54-205ENST00000424265 DNAH10OSP0CZ25 163 aa6.51□□□□□ -1.37
USP54-205ENST00000424265 HRNRQ86YZ3 2850 aaPredicted RBP6.51□□□□□ -1.37
USP54-205ENST00000424265 LOC400499M0QZD8 3231 aa6.51□□□□□ -1.37
USP54-205ENST00000424265 CELSR3Q9NYQ7 3312 aa6.5□□□□□ -1.37
USP54-205ENST00000424265 HIVEP1P15822 2718 aa6.5□□□□□ -1.37
USP54-205ENST00000424265 ZZEF1O43149 2961 aa6.49□□□□□ -1.37
USP54-205ENST00000424265 DMDP11532 3685 aa6.49□□□□□ -1.37
USP54-205ENST00000424265 DCHS1Q96JQ0 3298 aa6.49□□□□□ -1.37
USP54-205ENST00000424265 SPANXA2-OT1Q8N9U9 137 aa6.49□□□□□ -1.37
USP54-205ENST00000424265 NSD1Q96L73 2696 aaPredicted RBP6.48□□□□□ -1.37
USP54-205ENST00000424265 A0A0A0MQY5 61 aa6.48□□□□□ -1.37
USP54-205ENST00000424265 ST20-AS1Q8NBB2 130 aa6.48□□□□□ -1.37
USP54-205ENST00000424265 TEP1Q99973 2627 aaKnown RBP6.47□□□□□ -1.37
USP54-205ENST00000424265 NBDYA0A0U1RRE5 68 aa6.47□□□□□ -1.37
USP54-205ENST00000424265 H3BPC8 53 aa6.46□□□□□ -1.37
USP54-205ENST00000424265 SPEGQ15772 3267 aa6.46□□□□□ -1.38
USP54-205ENST00000424265 IGHV3OR16-9A0A0B4J2B5 98 aa6.45□□□□□ -1.38
USP54-205ENST00000424265 DEFB116Q30KQ4 102 aa6.45□□□□□ -1.38
USP54-205ENST00000424265 LINC00476Q8WZB0 136 aa6.45□□□□□ -1.38
USP54-205ENST00000424265 SETXQ7Z333 2677 aaKnown RBP6.44□□□□□ -1.38
USP54-205ENST00000424265 APLNQ9ULZ1 77 aa6.43□□□□□ -1.38
USP54-205ENST00000424265 KIAA0087Q14695 138 aa6.43□□□□□ -1.38
USP54-205ENST00000424265 PRR34Q9NV39 138 aa6.43□□□□□ -1.38
USP54-205ENST00000424265 LRBAP50851 2863 aa6.42□□□□□ -1.38
USP54-205ENST00000424265 C7orf33Q8WU49 177 aa6.42□□□□□ -1.38
USP54-205ENST00000424265 COL6A5A8TX70 2615 aa6.42□□□□□ -1.38
USP54-205ENST00000424265 LINC01558Q9Y6Z2 57 aa6.42□□□□□ -1.38
USP54-205ENST00000424265 PLA2G1BP04054 148 aaKnown RBP6.41□□□□□ -1.38
USP54-205ENST00000424265 TENM4Q6N022 2769 aa6.41□□□□□ -1.38
USP54-205ENST00000424265 SPINK7P58062 85 aa6.41□□□□□ -1.38
USP54-205ENST00000424265 ZCCHC13Q8WW36 166 aaKnown RBP6.41□□□□□ -1.38
USP54-205ENST00000424265 PCOTHQ58A44 107 aa6.41□□□□□ -1.38
USP54-205ENST00000424265 ASB16-AS1Q495Z4 193 aa6.4□□□□□ -1.38
USP54-205ENST00000424265 IGLV5-52A0A0A0MRZ9 124 aa6.4□□□□□ -1.39
USP54-205ENST00000424265 IGKV2-24A0A0C4DH68 120 aa6.4□□□□□ -1.39
USP54-205ENST00000424265 A0A1B0GW54 56 aa6.4□□□□□ -1.39
USP54-205ENST00000424265 GVQW2A0A096LPI5 108 aaPredicted RBP6.39□□□□□ -1.39
USP54-205ENST00000424265 K7EQZ3 153 aa6.39□□□□□ -1.39
USP54-205ENST00000424265 UNQ6190/PRO20217Q6UXQ8 127 aa6.39□□□□□ -1.39
USP54-205ENST00000424265 CSAG1Q6PB30 78 aa6.39□□□□□ -1.39
USP54-205ENST00000424265 ADM2Q7Z4H4 148 aa6.38□□□□□ -1.39
USP54-205ENST00000424265 ASH1LQ9NR48 2969 aaKnown RBP6.38□□□□□ -1.39
USP54-205ENST00000424265 IGHV6-1A0A0B4J1U7 121 aa6.38□□□□□ -1.39
USP54-205ENST00000424265 C1orf137Q5JT78 98 aa6.38□□□□□ -1.39
USP54-205ENST00000424265 PDZD2O15018 2839 aa6.38□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 68.7 ms