RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 KCNQ1DNQ9H478 68 aa4.59□□□□□ -1.68
SCN1A-204ENST00000423058 KLK9Q2XQG4 91 aa4.58□□□□□ -1.68
SCN1A-204ENST00000423058 IGLV1-50A0A075B6I6 118 aa4.58□□□□□ -1.68
SCN1A-204ENST00000423058 LINC01554Q52M75 96 aa4.58□□□□□ -1.68
SCN1A-204ENST00000423058 TM2D3Q9BRN9 247 aa4.58□□□□□ -1.68
SCN1A-204ENST00000423058 M0R2T5 61 aa4.58□□□□□ -1.68
SCN1A-204ENST00000423058 C8orf17Q9NRJ1 99 aa4.58□□□□□ -1.68
SCN1A-204ENST00000423058 PRR15Q8IV56 129 aa4.57□□□□□ -1.68
SCN1A-204ENST00000423058 A0A087WTM6 91 aa4.57□□□□□ -1.68
SCN1A-204ENST00000423058 KLKP1Q107X0 134 aa4.57□□□□□ -1.68
SCN1A-204ENST00000423058 FAM218AQ96MZ4 157 aa4.57□□□□□ -1.68
SCN1A-204ENST00000423058 Q6ZSA8 131 aa4.56□□□□□ -1.68
SCN1A-204ENST00000423058 PLA2G2DQ9UNK4 145 aa4.56□□□□□ -1.68
SCN1A-204ENST00000423058 IGLV7-43P04211 117 aa4.56□□□□□ -1.68
SCN1A-204ENST00000423058 K7EIL1 84 aa4.55□□□□□ -1.68
SCN1A-204ENST00000423058 PRO0461Q9UI25 63 aa4.55□□□□□ -1.68
SCN1A-204ENST00000423058 SMR3BP02814 79 aaPredicted RBP4.55□□□□□ -1.68
SCN1A-204ENST00000423058 IGFL1Q6UW32 110 aa4.55□□□□□ -1.68
SCN1A-204ENST00000423058 HRES1P13985 223 aa4.55□□□□□ -1.68
SCN1A-204ENST00000423058 CD164Q04900 197 aa4.55□□□□□ -1.68
SCN1A-204ENST00000423058 C4orf26Q17RF5 130 aa4.54□□□□□ -1.68
SCN1A-204ENST00000423058 SPANXA2-OT1Q8N9U9 137 aa4.54□□□□□ -1.68
SCN1A-204ENST00000423058 CSNK1G2-AS1Q8NCQ2 148 aa4.54□□□□□ -1.68
SCN1A-204ENST00000423058 TLX1NBP0CAT3 122 aa4.53□□□□□ -1.68
SCN1A-204ENST00000423058 LINC00528Q8N1L1 170 aa4.53□□□□□ -1.68
SCN1A-204ENST00000423058 PSORS1C2Q9UIG4 136 aa4.52□□□□□ -1.69
SCN1A-204ENST00000423058 CAMK2N1Q7Z7J9 78 aa4.52□□□□□ -1.69
SCN1A-204ENST00000423058 KRTAP10-11P60412 298 aa4.52□□□□□ -1.69
SCN1A-204ENST00000423058 C19orf73Q9NVV2 129 aa4.52□□□□□ -1.69
SCN1A-204ENST00000423058 A0A0D9SG42 100 aa4.51□□□□□ -1.69
SCN1A-204ENST00000423058 FAM104AQ969W3 186 aa4.51□□□□□ -1.69
SCN1A-204ENST00000423058 A8MUN3 132 aa4.5□□□□□ -1.69
SCN1A-204ENST00000423058 C15orf56Q8N910 161 aa4.5□□□□□ -1.69
SCN1A-204ENST00000423058 IGLV5-48A0A075B6I7 105 aa4.5□□□□□ -1.69
SCN1A-204ENST00000423058 PRR34Q9NV39 138 aa4.49□□□□□ -1.69
SCN1A-204ENST00000423058 CNBPP62633 177 aaKnown RBP4.49□□□□□ -1.69
SCN1A-204ENST00000423058 PRRC2CQ9Y520 2896 aaKnown RBP4.48□□□□□ -1.69
SCN1A-204ENST00000423058 WIPF1O43516 503 aa4.48□□□□□ -1.69
SCN1A-204ENST00000423058 SPRR4Q96PI1 79 aa4.48□□□□□ -1.69
SCN1A-204ENST00000423058 ZNF575Q86XF7 245 aa4.48□□□□□ -1.69
SCN1A-204ENST00000423058 IGLV7-46A0A075B6I9 117 aa4.48□□□□□ -1.69
SCN1A-204ENST00000423058 Q8N377 158 aa4.48□□□□□ -1.69
SCN1A-204ENST00000423058 KTN1-AS1Q86SY8 53 aa4.46□□□□□ -1.69
SCN1A-204ENST00000423058 CENPFP49454 3210 aa4.46□□□□□ -1.7
SCN1A-204ENST00000423058 SMCPP49901 116 aaPredicted RBP4.46□□□□□ -1.7
SCN1A-204ENST00000423058 CEP295Q9C0D2 2601 aa4.45□□□□□ -1.7
SCN1A-204ENST00000423058 Q8N1X5 172 aa4.44□□□□□ -1.7
SCN1A-204ENST00000423058 Q1T7F1 81 aa4.44□□□□□ -1.7
SCN1A-204ENST00000423058 LCA10Q71F78 164 aa4.44□□□□□ -1.7
SCN1A-204ENST00000423058 EP400Q96L91 3159 aa4.43□□□□□ -1.7
SCN1A-204ENST00000423058 ANAPC11Q9NYG5 84 aa4.43□□□□□ -1.7
SCN1A-204ENST00000423058 LITAFQ99732 161 aa4.42□□□□□ -1.7
SCN1A-204ENST00000423058 FAM229BQ4G0N7 80 aa4.42□□□□□ -1.7
SCN1A-204ENST00000423058 S4R3F8 94 aa4.42□□□□□ -1.7
SCN1A-204ENST00000423058 CSAG1Q6PB30 78 aa4.41□□□□□ -1.7
SCN1A-204ENST00000423058 LINC00612Q8N6U2 182 aa4.41□□□□□ -1.7
SCN1A-204ENST00000423058 A0A1W2PNN7 141 aa4.41□□□□□ -1.7
SCN1A-204ENST00000423058 SEC61BP60468 96 aaKnown RBP4.41□□□□□ -1.7
SCN1A-204ENST00000423058 PRR26Q8N8Z3 221 aa4.41□□□□□ -1.7
SCN1A-204ENST00000423058 EPG5Q9HCE0 2579 aa4.4□□□□□ -1.7
SCN1A-204ENST00000423058 CASC10Q5T4H9 136 aa4.4□□□□□ -1.71
SCN1A-204ENST00000423058 A0A1B0GU33 70 aa4.4□□□□□ -1.71
SCN1A-204ENST00000423058 CFAP46Q8IYW2 2715 aa4.39□□□□□ -1.71
SCN1A-204ENST00000423058 SRCAPQ6ZRS2 3230 aa4.39□□□□□ -1.71
SCN1A-204ENST00000423058 DMAC1Q96GE9 116 aa4.38□□□□□ -1.71
SCN1A-204ENST00000423058 ASB16-AS1Q495Z4 193 aa4.37□□□□□ -1.71
SCN1A-204ENST00000423058 H7BZZ5 65 aa4.37□□□□□ -1.71
SCN1A-204ENST00000423058 MGAM2Q2M2H8 2515 aa4.37□□□□□ -1.71
SCN1A-204ENST00000423058 KRTAP10-3P60369 221 aa4.36□□□□□ -1.71
SCN1A-204ENST00000423058 KMT2BQ9UMN6 2715 aaPredicted RBP4.35□□□□□ -1.71
SCN1A-204ENST00000423058 TNP2Q05952 138 aa4.35□□□□□ -1.71
SCN1A-204ENST00000423058 R4GN34 69 aa4.35□□□□□ -1.71
SCN1A-204ENST00000423058 HECTD1Q9ULT8 2610 aa4.35□□□□□ -1.71
SCN1A-204ENST00000423058 A0A0A0MQY5 61 aa4.35□□□□□ -1.71
SCN1A-204ENST00000423058 GIG44P09565 113 aaPredicted RBP4.34□□□□□ -1.71
SCN1A-204ENST00000423058 PLAC4Q8WY50 150 aa4.34□□□□□ -1.71
SCN1A-204ENST00000423058 A0A0G2JQZ4 141 aa4.33□□□□□ -1.72
SCN1A-204ENST00000423058 ZCCHC13Q8WW36 166 aaKnown RBP4.33□□□□□ -1.72
SCN1A-204ENST00000423058 FLNAP21333 2647 aaKnown RBP4.32□□□□□ -1.72
SCN1A-204ENST00000423058 A0A096LNT2 108 aa4.32□□□□□ -1.72
SCN1A-204ENST00000423058 ITPR3Q14573 2671 aa4.31□□□□□ -1.72
SCN1A-204ENST00000423058 OXTP01178 125 aa4.31□□□□□ -1.72
SCN1A-204ENST00000423058 Q75L30 129 aa4.31□□□□□ -1.72
SCN1A-204ENST00000423058 A0A1W2PNM2 257 aa4.3□□□□□ -1.72
SCN1A-204ENST00000423058 AKAP13Q12802 2813 aa4.3□□□□□ -1.72
SCN1A-204ENST00000423058 MAST4O15021 2626 aa4.3□□□□□ -1.72
SCN1A-204ENST00000423058 HELZ2Q9BYK8 2649 aaKnown RBP4.3□□□□□ -1.72
SCN1A-204ENST00000423058 PLAC8Q9NZF1 115 aa4.29□□□□□ -1.72
SCN1A-204ENST00000423058 FLNBO75369 2602 aaKnown RBP4.28□□□□□ -1.72
SCN1A-204ENST00000423058 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP4.27□□□□□ -1.73
SCN1A-204ENST00000423058 Q5VSD8 79 aa4.27□□□□□ -1.73
SCN1A-204ENST00000423058 OCR1Q9BZK8 76 aa4.26□□□□□ -1.73
SCN1A-204ENST00000423058 STAB1Q9NY15 2570 aa4.26□□□□□ -1.73
SCN1A-204ENST00000423058 NBEAL1Q6ZS30 2694 aa4.25□□□□□ -1.73
SCN1A-204ENST00000423058 ATRQ13535 2644 aa4.25□□□□□ -1.73
SCN1A-204ENST00000423058 FP248Q71RG6 208 aaPredicted RBP4.24□□□□□ -1.73
SCN1A-204ENST00000423058 SPINK7P58062 85 aa4.24□□□□□ -1.73
SCN1A-204ENST00000423058 H1FX-AS1Q4G0G2 97 aa4.24□□□□□ -1.73
SCN1A-204ENST00000423058 EIF4EBP3O60516 100 aaPredicted RBP4.24□□□□□ -1.73
SCN1A-204ENST00000423058 KRTAP1-3Q8IUG1 177 aa4.24□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 59.2 ms