RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 SPCS1Q9Y6A9 102 aa10.81□□□□□ -0.68
CCDC28B-202ENST00000421922 RYR1P21817 5038 aa10.8□□□□□ -0.68
CCDC28B-202ENST00000421922 A0A1B0GVY2 172 aa10.8□□□□□ -0.68
CCDC28B-202ENST00000421922 KCNQ1DNQ9H478 68 aa10.8□□□□□ -0.68
CCDC28B-202ENST00000421922 PLAC8Q9NZF1 115 aa10.8□□□□□ -0.68
CCDC28B-202ENST00000421922 FAT2Q9NYQ8 4349 aa10.79□□□□□ -0.68
CCDC28B-202ENST00000421922 H0YGX0 51 aa10.79□□□□□ -0.68
CCDC28B-202ENST00000421922 TRBV20-1A0A075B6N2 111 aa10.78□□□□□ -0.68
CCDC28B-202ENST00000421922 GTF2H5Q6ZYL4 71 aa10.78□□□□□ -0.68
CCDC28B-202ENST00000421922 KIAA1109Q2LD37 5005 aa10.78□□□□□ -0.68
CCDC28B-202ENST00000421922 ETDCA0A1B0GVM5 59 aa10.77□□□□□ -0.68
CCDC28B-202ENST00000421922 SNCGO76070 127 aa10.77□□□□□ -0.68
CCDC28B-202ENST00000421922 COX7BP24311 80 aa10.76□□□□□ -0.69
CCDC28B-202ENST00000421922 ATXN8Q156A1 80 aa10.76□□□□□ -0.69
CCDC28B-202ENST00000421922 REG3GQ6UW15 175 aa10.76□□□□□ -0.69
CCDC28B-202ENST00000421922 CLEC2BQ92478 149 aa10.75□□□□□ -0.69
CCDC28B-202ENST00000421922 DNAH11Q96DT5 4516 aa10.75□□□□□ -0.69
CCDC28B-202ENST00000421922 TRBV7-6A0A0J9YX20 115 aa10.75□□□□□ -0.69
CCDC28B-202ENST00000421922 K7EP34 96 aa10.75□□□□□ -0.69
CCDC28B-202ENST00000421922 Q6ZSA8 131 aa10.75□□□□□ -0.69
CCDC28B-202ENST00000421922 FAM30AQ9NZY2 134 aa10.75□□□□□ -0.69
CCDC28B-202ENST00000421922 EPM2AB3EWF7 344 aa10.74□□□□□ -0.69
CCDC28B-202ENST00000421922 TCL1BO95988 128 aa10.74□□□□□ -0.69
CCDC28B-202ENST00000421922 PKD1P98161 4303 aa10.73□□□□□ -0.69
CCDC28B-202ENST00000421922 SLC25A20O43772 301 aa10.73□□□□□ -0.69
CCDC28B-202ENST00000421922 SCXQ7RTU7 201 aa10.73□□□□□ -0.69
CCDC28B-202ENST00000421922 CIRBP-AS1Q8TBR5 109 aa10.73□□□□□ -0.69
CCDC28B-202ENST00000421922 LST1O00453 97 aa10.71□□□□□ -0.69
CCDC28B-202ENST00000421922 DNAL4O96015 105 aa10.71□□□□□ -0.69
CCDC28B-202ENST00000421922 ELOF1P60002 83 aaKnown RBP10.71□□□□□ -0.69
CCDC28B-202ENST00000421922 DNAH5Q8TE73 4624 aa10.7□□□□□ -0.7
CCDC28B-202ENST00000421922 SPRR1AP35321 89 aa10.69□□□□□ -0.7
CCDC28B-202ENST00000421922 FAM19A1Q7Z5A9 133 aa10.69□□□□□ -0.7
CCDC28B-202ENST00000421922 A0A1B0GX51 115 aa10.68□□□□□ -0.7
CCDC28B-202ENST00000421922 H3BMG7 143 aa10.68□□□□□ -0.7
CCDC28B-202ENST00000421922 TRACP01848 142 aa10.67□□□□□ -0.7
CCDC28B-202ENST00000421922 HAMPP81172 84 aa10.67□□□□□ -0.7
CCDC28B-202ENST00000421922 Q6ZRX8 168 aa10.67□□□□□ -0.7
CCDC28B-202ENST00000421922 FAM218AQ96MZ4 157 aa10.67□□□□□ -0.7
CCDC28B-202ENST00000421922 hADV29S1A0JD25 119 aa10.67□□□□□ -0.7
CCDC28B-202ENST00000421922 B5MCH6 92 aa10.67□□□□□ -0.7
CCDC28B-202ENST00000421922 UBE2AP49459 152 aa10.67□□□□□ -0.7
CCDC28B-202ENST00000421922 LINC00575Q6W349 94 aa10.67□□□□□ -0.7
CCDC28B-202ENST00000421922 BCE1O60756 84 aa10.66□□□□□ -0.7
CCDC28B-202ENST00000421922 UBE2V1Q13404 147 aa10.66□□□□□ -0.7
CCDC28B-202ENST00000421922 LINC00528Q8N1L1 170 aa10.66□□□□□ -0.7
CCDC28B-202ENST00000421922 DHRS4-AS1Q9P1J3 65 aa10.66□□□□□ -0.7
CCDC28B-202ENST00000421922 KRTAP4-16G5E9R7 235 aaPredicted RBP10.65□□□□□ -0.7
CCDC28B-202ENST00000421922 KRTAP11-1Q8IUC1 163 aa10.65□□□□□ -0.7
CCDC28B-202ENST00000421922 C9JAW5 83 aa10.64□□□□□ -0.71
CCDC28B-202ENST00000421922 INAFM2P0DMQ5 153 aa10.64□□□□□ -0.71
CCDC28B-202ENST00000421922 PSORS1C2Q9UIG4 136 aa10.64□□□□□ -0.71
CCDC28B-202ENST00000421922 C1orf137Q5JT78 98 aa10.63□□□□□ -0.71
CCDC28B-202ENST00000421922 PRLHP81277 87 aa10.62□□□□□ -0.71
CCDC28B-202ENST00000421922 HIGD2AQ9BW72 106 aa10.6□□□□□ -0.71
CCDC28B-202ENST00000421922 GHRHP01286 108 aa10.59□□□□□ -0.71
CCDC28B-202ENST00000421922 MTURNQ8N3F0 131 aa10.59□□□□□ -0.71
CCDC28B-202ENST00000421922 ORMDL1Q9P0S3 153 aa10.59□□□□□ -0.71
CCDC28B-202ENST00000421922 H0Y9J4 135 aa10.58□□□□□ -0.72
CCDC28B-202ENST00000421922 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP10.58□□□□□ -0.72
CCDC28B-202ENST00000421922 Q6ZQY7 126 aa10.58□□□□□ -0.72
CCDC28B-202ENST00000421922 DNAH8Q96JB1 4490 aa10.58□□□□□ -0.72
CCDC28B-202ENST00000421922 Q9BRP9 147 aa10.58□□□□□ -0.72
CCDC28B-202ENST00000421922 F8W1H4 67 aa10.57□□□□□ -0.72
CCDC28B-202ENST00000421922 OCIAD2Q56VL3 154 aa10.57□□□□□ -0.72
CCDC28B-202ENST00000421922 H3BQ85 93 aa10.56□□□□□ -0.72
CCDC28B-202ENST00000421922 H3BT86 120 aa10.56□□□□□ -0.72
CCDC28B-202ENST00000421922 ABCA13Q86UQ4 5058 aa10.55□□□□□ -0.72
CCDC28B-202ENST00000421922 PKHD1P08F94 4074 aa10.55□□□□□ -0.72
CCDC28B-202ENST00000421922 BAALC-AS2P0C853 105 aa10.55□□□□□ -0.72
CCDC28B-202ENST00000421922 SMCR5Q8TEV8 140 aa10.55□□□□□ -0.72
CCDC28B-202ENST00000421922 XGP55808 180 aa10.54□□□□□ -0.72
CCDC28B-202ENST00000421922 DYNC1H1Q14204 4646 aaKnown RBP10.54□□□□□ -0.72
CCDC28B-202ENST00000421922 IGLV7-43P04211 117 aa10.53□□□□□ -0.72
CCDC28B-202ENST00000421922 ANKRD29Q8N6D5 301 aa10.53□□□□□ -0.72
CCDC28B-202ENST00000421922 TMEM256-PLSCR3K7ERE1 68 aa10.51□□□□□ -0.73
CCDC28B-202ENST00000421922 ZNF861PO60384 105 aa10.51□□□□□ -0.73
CCDC28B-202ENST00000421922 RPL37AP61513 92 aaKnown RBP10.51□□□□□ -0.73
CCDC28B-202ENST00000421922 KRTAP13-1Q8IUC0 172 aa10.51□□□□□ -0.73
CCDC28B-202ENST00000421922 DEFB105AQ8NG35 78 aa10.51□□□□□ -0.73
CCDC28B-202ENST00000421922 PRO0461Q9UI25 63 aa10.51□□□□□ -0.73
CCDC28B-202ENST00000421922 LRP1BQ9NZR2 4599 aa10.51□□□□□ -0.73
CCDC28B-202ENST00000421922 ERC2-IT1O76042 136 aa10.5□□□□□ -0.73
CCDC28B-202ENST00000421922 SMR3BP02814 79 aaPredicted RBP10.5□□□□□ -0.73
CCDC28B-202ENST00000421922 KRTAP4-5Q9BYR2 181 aa10.5□□□□□ -0.73
CCDC28B-202ENST00000421922 ZNF706Q9Y5V0 76 aaPredicted RBP10.49□□□□□ -0.73
CCDC28B-202ENST00000421922 ST20-AS1Q8NBB2 130 aa10.48□□□□□ -0.73
CCDC28B-202ENST00000421922 PPDPFLQ8WWR9 84 aa10.48□□□□□ -0.73
CCDC28B-202ENST00000421922 CDK2AP2O75956 126 aa10.47□□□□□ -0.73
CCDC28B-202ENST00000421922 SMCPP49901 116 aaPredicted RBP10.47□□□□□ -0.73
CCDC28B-202ENST00000421922 LAMTOR3Q9UHA4 124 aa10.47□□□□□ -0.73
CCDC28B-202ENST00000421922 TEX49A0A1B0GTD5 131 aa10.45□□□□□ -0.74
CCDC28B-202ENST00000421922 IGLV5-48A0A075B6I7 105 aa10.43□□□□□ -0.74
CCDC28B-202ENST00000421922 GAGE2AQ6NT46 116 aa10.43□□□□□ -0.74
CCDC28B-202ENST00000421922 ETDBQ3ZM63 59 aa10.42□□□□□ -0.74
CCDC28B-202ENST00000421922 TEN1Q86WV5 123 aa10.42□□□□□ -0.74
CCDC28B-202ENST00000421922 LINC01600Q96MT4 127 aa10.42□□□□□ -0.74
CCDC28B-202ENST00000421922 F8WEM9 126 aa10.41□□□□□ -0.74
CCDC28B-202ENST00000421922 FAM229AH3BQW9 127 aa10.41□□□□□ -0.74
CCDC28B-202ENST00000421922 Q8N377 158 aa10.41□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 58.1 ms