RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 M0R378 163 aa9.76□□□□□ -0.85
USP4-203ENST00000415188 VPREB1P12018 145 aa9.76□□□□□ -0.85
USP4-203ENST00000415188 TRBV10-3A0A0K0K1G6 114 aa9.75□□□□□ -0.85
USP4-203ENST00000415188 Q6ZRU5 148 aa9.75□□□□□ -0.85
USP4-203ENST00000415188 XAGE1AQ9HD64 81 aa9.74□□□□□ -0.85
USP4-203ENST00000415188 KIAA1109Q2LD37 5005 aa9.74□□□□□ -0.85
USP4-203ENST00000415188 IGKV2D-24A0A075B6R9 120 aa9.73□□□□□ -0.85
USP4-203ENST00000415188 ZNF73O43830 326 aaPredicted RBP9.72□□□□□ -0.85
USP4-203ENST00000415188 COX7BP24311 80 aa9.72□□□□□ -0.85
USP4-203ENST00000415188 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP9.72□□□□□ -0.85
USP4-203ENST00000415188 M0R2N4 97 aa9.72□□□□□ -0.85
USP4-203ENST00000415188 SYCNQ0VAF6 134 aa9.72□□□□□ -0.85
USP4-203ENST00000415188 ATP5EP2Q5VTU8 51 aa9.72□□□□□ -0.85
USP4-203ENST00000415188 LINC00846Q9NV44 126 aa9.72□□□□□ -0.85
USP4-203ENST00000415188 DYNC1H1Q14204 4646 aaKnown RBP9.71□□□□□ -0.85
USP4-203ENST00000415188 LOC110117498A0A087WWA1 95 aa9.71□□□□□ -0.86
USP4-203ENST00000415188 FAM236AA0A1B0GUQ0 79 aa9.71□□□□□ -0.86
USP4-203ENST00000415188 FAM236BA0A1B0GV22 79 aa9.71□□□□□ -0.86
USP4-203ENST00000415188 PDE6GP18545 87 aa9.71□□□□□ -0.86
USP4-203ENST00000415188 ELOF1P60002 83 aaKnown RBP9.71□□□□□ -0.86
USP4-203ENST00000415188 RMI2Q96E14 147 aa9.71□□□□□ -0.86
USP4-203ENST00000415188 TLX1NBP0CAT3 122 aa9.7□□□□□ -0.86
USP4-203ENST00000415188 RBM3P98179 157 aaKnown RBP9.69□□□□□ -0.86
USP4-203ENST00000415188 UBE2DNLQ8IWF7 75 aa9.69□□□□□ -0.86
USP4-203ENST00000415188 DNAH11Q96DT5 4516 aa9.69□□□□□ -0.86
USP4-203ENST00000415188 PKHD1P08F94 4074 aa9.69□□□□□ -0.86
USP4-203ENST00000415188 RTL8CO15255 209 aa9.67□□□□□ -0.86
USP4-203ENST00000415188 Q6ZQY7 126 aa9.67□□□□□ -0.86
USP4-203ENST00000415188 LINC00336Q6ZUF6 198 aa9.67□□□□□ -0.86
USP4-203ENST00000415188 PLA2G2DQ9UNK4 145 aa9.67□□□□□ -0.86
USP4-203ENST00000415188 LINC00588Q9Y4M8 146 aa9.67□□□□□ -0.86
USP4-203ENST00000415188 A0A1B0GVY2 172 aa9.66□□□□□ -0.86
USP4-203ENST00000415188 HIST1H4AP62805 103 aaKnown RBP9.66□□□□□ -0.86
USP4-203ENST00000415188 UPK3BQ9BT76 320 aa9.66□□□□□ -0.86
USP4-203ENST00000415188 KRTAP17-1Q9BYP8 105 aa9.66□□□□□ -0.86
USP4-203ENST00000415188 LAMTOR3Q9UHA4 124 aa9.66□□□□□ -0.86
USP4-203ENST00000415188 PKD1P98161 4303 aa9.66□□□□□ -0.86
USP4-203ENST00000415188 Q6ZQT0 140 aa9.66□□□□□ -0.86
USP4-203ENST00000415188 Q6ZRP5 223 aa9.66□□□□□ -0.86
USP4-203ENST00000415188 CCDC179H3BU77 68 aa9.64□□□□□ -0.87
USP4-203ENST00000415188 ATOX1O00244 68 aa9.64□□□□□ -0.87
USP4-203ENST00000415188 Q6ZR54 194 aa9.64□□□□□ -0.87
USP4-203ENST00000415188 LINC00528Q8N1L1 170 aa9.64□□□□□ -0.87
USP4-203ENST00000415188 UBL5Q9BZL1 73 aa9.64□□□□□ -0.87
USP4-203ENST00000415188 NKAPP1Q8N9T2 125 aa9.63□□□□□ -0.87
USP4-203ENST00000415188 DSCR8Q96T75 97 aa9.63□□□□□ -0.87
USP4-203ENST00000415188 IGLV5-37A0A075B6J1 123 aa9.62□□□□□ -0.87
USP4-203ENST00000415188 KCNQ1DNQ9H478 68 aa9.62□□□□□ -0.87
USP4-203ENST00000415188 IGKV3D-7A0A0C4DH55 119 aa9.61□□□□□ -0.87
USP4-203ENST00000415188 PCLOQ9Y6V0 5065 aa9.61□□□□□ -0.87
USP4-203ENST00000415188 USP17L23D6RBM5 183 aa9.6□□□□□ -0.87
USP4-203ENST00000415188 B5MCH6 92 aa9.59□□□□□ -0.87
USP4-203ENST00000415188 UQCRQO14949 82 aa9.59□□□□□ -0.87
USP4-203ENST00000415188 TRBV7-4A0A0J9YYF1 115 aa9.58□□□□□ -0.88
USP4-203ENST00000415188 PRYO14603 147 aa9.58□□□□□ -0.88
USP4-203ENST00000415188 C3orf22Q8N5N4 141 aa9.58□□□□□ -0.88
USP4-203ENST00000415188 C7orf33Q8WU49 177 aa9.58□□□□□ -0.88
USP4-203ENST00000415188 RYR1P21817 5038 aa9.57□□□□□ -0.88
USP4-203ENST00000415188 C1orf134Q5TEV5 83 aa9.57□□□□□ -0.88
USP4-203ENST00000415188 COX7CP15954 63 aa9.55□□□□□ -0.88
USP4-203ENST00000415188 SERTAD4-AS1Q5TG53 156 aa9.55□□□□□ -0.88
USP4-203ENST00000415188 NBDYA0A0U1RRE5 68 aa9.54□□□□□ -0.88
USP4-203ENST00000415188 LOC107984640A0A0U1RRK4 108 aa9.54□□□□□ -0.88
USP4-203ENST00000415188 DHRS4-AS1Q9P1J3 65 aa9.54□□□□□ -0.88
USP4-203ENST00000415188 TNP2Q05952 138 aa9.53□□□□□ -0.88
USP4-203ENST00000415188 LRP1BQ9NZR2 4599 aa9.52□□□□□ -0.88
USP4-203ENST00000415188 SPRR1AP35321 89 aa9.52□□□□□ -0.89
USP4-203ENST00000415188 C9orf153Q5TBE3 101 aa9.52□□□□□ -0.89
USP4-203ENST00000415188 IGLV1-50A0A075B6I6 118 aa9.51□□□□□ -0.89
USP4-203ENST00000415188 BCE1O60756 84 aa9.51□□□□□ -0.89
USP4-203ENST00000415188 CXCL6P80162 114 aa9.51□□□□□ -0.89
USP4-203ENST00000415188 Q6ZVQ6 151 aa9.5□□□□□ -0.89
USP4-203ENST00000415188 SERP2Q8N6R1 65 aa9.5□□□□□ -0.89
USP4-203ENST00000415188 HSPG2P98160 4391 aa9.5□□□□□ -0.89
USP4-203ENST00000415188 ABCA13Q86UQ4 5058 aa9.5□□□□□ -0.89
USP4-203ENST00000415188 A0A087WVE0 104 aa9.49□□□□□ -0.89
USP4-203ENST00000415188 KRTAP4-16G5E9R7 235 aaPredicted RBP9.49□□□□□ -0.89
USP4-203ENST00000415188 Q6ZRX8 168 aa9.49□□□□□ -0.89
USP4-203ENST00000415188 KRTAP1-5Q9BYS1 174 aa9.49□□□□□ -0.89
USP4-203ENST00000415188 SS18L2Q9UHA2 77 aa9.49□□□□□ -0.89
USP4-203ENST00000415188 ETDCA0A1B0GVM5 59 aa9.48□□□□□ -0.89
USP4-203ENST00000415188 CRYGAP11844 174 aa9.47□□□□□ -0.89
USP4-203ENST00000415188 LINC01547P58512 204 aaPredicted RBP9.47□□□□□ -0.89
USP4-203ENST00000415188 A0A1B0GW54 56 aa9.47□□□□□ -0.89
USP4-203ENST00000415188 C14orf177Q52M58 125 aa9.47□□□□□ -0.89
USP4-203ENST00000415188 MRPL55Q7Z7F7 128 aaKnown RBP9.47□□□□□ -0.89
USP4-203ENST00000415188 CNBPP62633 177 aaKnown RBP9.46□□□□□ -0.9
USP4-203ENST00000415188 C16orf90A8MZG2 172 aa9.45□□□□□ -0.9
USP4-203ENST00000415188 FAM19A1Q7Z5A9 133 aa9.45□□□□□ -0.9
USP4-203ENST00000415188 APOBP04114 4563 aaKnown RBP9.45□□□□□ -0.9
USP4-203ENST00000415188 DNAH5Q8TE73 4624 aa9.44□□□□□ -0.9
USP4-203ENST00000415188 IGLV5-48A0A075B6I7 105 aa9.44□□□□□ -0.9
USP4-203ENST00000415188 FAM168BA1KXE4 195 aa9.44□□□□□ -0.9
USP4-203ENST00000415188 Q8N377 158 aa9.44□□□□□ -0.9
USP4-203ENST00000415188 HAMPP81172 84 aa9.43□□□□□ -0.9
USP4-203ENST00000415188 KRTAP7-1Q8IUC3 87 aa9.43□□□□□ -0.9
USP4-203ENST00000415188 PKIGQ9Y2B9 76 aa9.43□□□□□ -0.9
USP4-203ENST00000415188 RPL37AP8A6NKH3 93 aa9.42□□□□□ -0.9
USP4-203ENST00000415188 FAM19A5Q7Z5A7 132 aaPredicted RBP9.42□□□□□ -0.9
USP4-203ENST00000415188 SMIM20Q8N5G0 67 aa9.42□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 149.5 ms