RNA–Protein interactions for RNA: ENST00000412568.6

PTPRF-204, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5

Gene PTPRF, Length 4,154 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-204ENST00000412568 LINC00588Q9Y4M8 146 aa7.6□□□□□ -1.19
PTPRF-204ENST00000412568 K7EIL1 84 aa7.59□□□□□ -1.19
PTPRF-204ENST00000412568 LINC01561Q8N1V8 128 aa7.59□□□□□ -1.19
PTPRF-204ENST00000412568 Q6ZVQ6 151 aa7.59□□□□□ -1.2
PTPRF-204ENST00000412568 MDFIQ99750 246 aa7.58□□□□□ -1.2
PTPRF-204ENST00000412568 A6NED7 52 aa7.57□□□□□ -1.2
PTPRF-204ENST00000412568 CELSR1Q9NYQ6 3014 aa7.57□□□□□ -1.2
PTPRF-204ENST00000412568 IGLV9-49A0A0B4J1Y8 123 aa7.57□□□□□ -1.2
PTPRF-204ENST00000412568 LINC00575Q6W349 94 aa7.57□□□□□ -1.2
PTPRF-204ENST00000412568 PRLHP81277 87 aa7.56□□□□□ -1.2
PTPRF-204ENST00000412568 Q8N9L7 120 aa7.56□□□□□ -1.2
PTPRF-204ENST00000412568 C2orf48Q96LS8 159 aa7.56□□□□□ -1.2
PTPRF-204ENST00000412568 CSMD1Q96PZ7 3565 aa7.55□□□□□ -1.2
PTPRF-204ENST00000412568 CRYGAP11844 174 aa7.55□□□□□ -1.2
PTPRF-204ENST00000412568 LINC01547P58512 204 aaPredicted RBP7.55□□□□□ -1.2
PTPRF-204ENST00000412568 TMEM254Q8TBM7 123 aa7.55□□□□□ -1.2
PTPRF-204ENST00000412568 LINC00208Q96KT6 92 aa7.55□□□□□ -1.2
PTPRF-204ENST00000412568 SPINK6Q6UWN8 80 aa7.55□□□□□ -1.2
PTPRF-204ENST00000412568 PRYO14603 147 aa7.54□□□□□ -1.2
PTPRF-204ENST00000412568 DHRS4-AS1Q9P1J3 65 aa7.54□□□□□ -1.2
PTPRF-204ENST00000412568 SVEP1Q4LDE5 3571 aa7.54□□□□□ -1.2
PTPRF-204ENST00000412568 PSPHP1O15172 72 aa7.54□□□□□ -1.2
PTPRF-204ENST00000412568 C4orf26Q17RF5 130 aa7.54□□□□□ -1.2
PTPRF-204ENST00000412568 C1orf137Q5JT78 98 aa7.53□□□□□ -1.2
PTPRF-204ENST00000412568 C22orf24Q9Y442 160 aa7.53□□□□□ -1.2
PTPRF-204ENST00000412568 CUBNO60494 3623 aa7.53□□□□□ -1.2
PTPRF-204ENST00000412568 C7orf33Q8WU49 177 aa7.52□□□□□ -1.2
PTPRF-204ENST00000412568 FAM104AQ969W3 186 aa7.52□□□□□ -1.2
PTPRF-204ENST00000412568 NHLRC4P0CG21 123 aaPredicted RBP7.52□□□□□ -1.21
PTPRF-204ENST00000412568 REG3GQ6UW15 175 aa7.52□□□□□ -1.21
PTPRF-204ENST00000412568 PMAIP1Q13794 54 aa7.52□□□□□ -1.21
PTPRF-204ENST00000412568 TRBV7-6A0A0J9YX20 115 aa7.51□□□□□ -1.21
PTPRF-204ENST00000412568 STAB2Q8WWQ8 2551 aa7.51□□□□□ -1.21
PTPRF-204ENST00000412568 H3BNG1 76 aa7.51□□□□□ -1.21
PTPRF-204ENST00000412568 C4orf48Q5BLP8 95 aa7.51□□□□□ -1.21
PTPRF-204ENST00000412568 DEFB116Q30KQ4 102 aa7.51□□□□□ -1.21
PTPRF-204ENST00000412568 TENM4Q6N022 2769 aa7.51□□□□□ -1.21
PTPRF-204ENST00000412568 CHTF8P0CG12 524 aa7.5□□□□□ -1.21
PTPRF-204ENST00000412568 IGLV5-52A0A0A0MRZ9 124 aa7.5□□□□□ -1.21
PTPRF-204ENST00000412568 LINC00167Q96N53 147 aa7.5□□□□□ -1.21
PTPRF-204ENST00000412568 Q6ZRP5 223 aa7.5□□□□□ -1.21
PTPRF-204ENST00000412568 LINC00612Q8N6U2 182 aa7.5□□□□□ -1.21
PTPRF-204ENST00000412568 C1orf134Q5TEV5 83 aa7.48□□□□□ -1.21
PTPRF-204ENST00000412568 FAM168BA1KXE4 195 aa7.48□□□□□ -1.21
PTPRF-204ENST00000412568 SMCR5Q8TEV8 140 aa7.48□□□□□ -1.21
PTPRF-204ENST00000412568 KIAA0087Q14695 138 aa7.48□□□□□ -1.21
PTPRF-204ENST00000412568 RPS28P62857 69 aaKnown RBP7.46□□□□□ -1.21
PTPRF-204ENST00000412568 PRR15LQ9BU68 103 aa7.46□□□□□ -1.22
PTPRF-204ENST00000412568 LINC00474Q9P2X8 69 aa7.46□□□□□ -1.22
PTPRF-204ENST00000412568 PRO0628Q9UI54 55 aa7.46□□□□□ -1.22
PTPRF-204ENST00000412568 CASC10Q5T4H9 136 aa7.45□□□□□ -1.22
PTPRF-204ENST00000412568 A0A087WSZ3 146 aa7.45□□□□□ -1.22
PTPRF-204ENST00000412568 DNAH10OSP0CZ25 163 aa7.45□□□□□ -1.22
PTPRF-204ENST00000412568 PRR34Q9NV39 138 aa7.45□□□□□ -1.22
PTPRF-204ENST00000412568 CASC2Q6XLA1 102 aa7.44□□□□□ -1.22
PTPRF-204ENST00000412568 PHF5AQ7RTV0 110 aaKnown RBP7.44□□□□□ -1.22
PTPRF-204ENST00000412568 NBDYA0A0U1RRE5 68 aa7.43□□□□□ -1.22
PTPRF-204ENST00000412568 PCOTHQ58A44 107 aa7.43□□□□□ -1.22
PTPRF-204ENST00000412568 SERTAD4-AS1Q5TG53 156 aa7.43□□□□□ -1.22
PTPRF-204ENST00000412568 Q9BRP9 147 aa7.43□□□□□ -1.22
PTPRF-204ENST00000412568 SEC61GP60059 68 aa7.42□□□□□ -1.22
PTPRF-204ENST00000412568 CXCL6P80162 114 aa7.42□□□□□ -1.22
PTPRF-204ENST00000412568 ST20-AS1Q8NBB2 130 aa7.42□□□□□ -1.22
PTPRF-204ENST00000412568 C15orf56Q8N910 161 aa7.41□□□□□ -1.22
PTPRF-204ENST00000412568 F8WDY8 70 aa7.41□□□□□ -1.22
PTPRF-204ENST00000412568 CIRBP-AS1Q8TBR5 109 aa7.41□□□□□ -1.22
PTPRF-204ENST00000412568 VPREB1P12018 145 aa7.41□□□□□ -1.22
PTPRF-204ENST00000412568 TM2D3Q9BRN9 247 aa7.41□□□□□ -1.22
PTPRF-204ENST00000412568 GVQW2A0A096LPI5 108 aaPredicted RBP7.4□□□□□ -1.22
PTPRF-204ENST00000412568 SMIM29Q86T20 159 aa7.4□□□□□ -1.22
PTPRF-204ENST00000412568 C9orf129Q5T035 196 aaKnown RBP7.39□□□□□ -1.23
PTPRF-204ENST00000412568 ELOF1P60002 83 aaKnown RBP7.39□□□□□ -1.23
PTPRF-204ENST00000412568 IGLV6-57P01721 117 aa7.38□□□□□ -1.23
PTPRF-204ENST00000412568 Q6ZQT0 140 aa7.38□□□□□ -1.23
PTPRF-204ENST00000412568 H0Y9P7 68 aa7.37□□□□□ -1.23
PTPRF-204ENST00000412568 SPENQ96T58 3664 aaKnown RBP7.36□□□□□ -1.23
PTPRF-204ENST00000412568 HCG22E2RYF7 251 aa7.35□□□□□ -1.23
PTPRF-204ENST00000412568 CSMD2Q7Z408 3487 aa7.35□□□□□ -1.23
PTPRF-204ENST00000412568 ZNF706Q9Y5V0 76 aaPredicted RBP7.34□□□□□ -1.23
PTPRF-204ENST00000412568 Q6ZRX8 168 aa7.34□□□□□ -1.23
PTPRF-204ENST00000412568 IGHV6-1A0A0B4J1U7 121 aa7.34□□□□□ -1.24
PTPRF-204ENST00000412568 A0A0G2JQZ4 141 aa7.33□□□□□ -1.24
PTPRF-204ENST00000412568 A0A1W2PNN7 141 aa7.33□□□□□ -1.24
PTPRF-204ENST00000412568 RTL8CO15255 209 aa7.33□□□□□ -1.24
PTPRF-204ENST00000412568 BCE1O60756 84 aa7.33□□□□□ -1.24
PTPRF-204ENST00000412568 C16orf90A8MZG2 172 aa7.33□□□□□ -1.24
PTPRF-204ENST00000412568 EPM2AB3EWF7 344 aa7.32□□□□□ -1.24
PTPRF-204ENST00000412568 FBN1P35555 2871 aaKnown RBP7.31□□□□□ -1.24
PTPRF-204ENST00000412568 ZFHX3Q15911 3703 aa7.31□□□□□ -1.24
PTPRF-204ENST00000412568 TENM1Q9UKZ4 2725 aa7.31□□□□□ -1.24
PTPRF-204ENST00000412568 LOC110117498A0A087WWA1 95 aa7.31□□□□□ -1.24
PTPRF-204ENST00000412568 C1orf64Q8NEQ6 169 aa7.3□□□□□ -1.24
PTPRF-204ENST00000412568 OTOGQ6ZRI0 2925 aa7.3□□□□□ -1.24
PTPRF-204ENST00000412568 NBPF19A0A087WUL8 3843 aa7.3□□□□□ -1.24
PTPRF-204ENST00000412568 hDV103S1A0JD37 113 aa7.29□□□□□ -1.24
PTPRF-204ENST00000412568 MOBPQ13875 183 aa7.29□□□□□ -1.24
PTPRF-204ENST00000412568 LINC00528Q8N1L1 170 aa7.29□□□□□ -1.24
PTPRF-204ENST00000412568 WIPF1O43516 503 aa7.28□□□□□ -1.24
PTPRF-204ENST00000412568 LINC00476Q8WZB0 136 aa7.28□□□□□ -1.24
PTPRF-204ENST00000412568 RETNLBQ9BQ08 111 aa7.28□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 72.3 ms