RNA–Protein interactions for RNA: ENST00000401468.7

VPS53-203, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 1,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-203ENST00000401468 IFITM1P13164 125 aa5.7□□□□□ -1.5
VPS53-203ENST00000401468 RPL24P83731 157 aaKnown RBP5.7□□□□□ -1.5
VPS53-203ENST00000401468 SLC25A34Q6PIV7 304 aa5.7□□□□□ -1.5
VPS53-203ENST00000401468 C2orf91Q6ZV80 131 aa5.7□□□□□ -1.5
VPS53-203ENST00000401468 FAM19A5Q7Z5A7 132 aaPredicted RBP5.7□□□□□ -1.5
VPS53-203ENST00000401468 LINC00308Q8TCZ7 52 aa5.7□□□□□ -1.5
VPS53-203ENST00000401468 C22orf24Q9Y442 160 aa5.7□□□□□ -1.5
VPS53-203ENST00000401468 TRBV10-2A0A0K0K1G8 114 aa5.69□□□□□ -1.5
VPS53-203ENST00000401468 M0QXV9 152 aa5.69□□□□□ -1.5
VPS53-203ENST00000401468 PHF5AQ7RTV0 110 aaKnown RBP5.68□□□□□ -1.5
VPS53-203ENST00000401468 MRPL55Q7Z7F7 128 aaKnown RBP5.68□□□□□ -1.5
VPS53-203ENST00000401468 COPS9Q8WXC6 57 aa5.68□□□□□ -1.5
VPS53-203ENST00000401468 KRTAP11-1Q8IUC1 163 aa5.67□□□□□ -1.5
VPS53-203ENST00000401468 C7orf33Q8WU49 177 aa5.67□□□□□ -1.5
VPS53-203ENST00000401468 MIEN1Q9BRT3 115 aa5.67□□□□□ -1.5
VPS53-203ENST00000401468 IGLV1-50A0A075B6I6 118 aa5.66□□□□□ -1.5
VPS53-203ENST00000401468 IGKV2-28A0A075B6P5 120 aa5.66□□□□□ -1.5
VPS53-203ENST00000401468 M0R378 163 aa5.66□□□□□ -1.5
VPS53-203ENST00000401468 IGKV2D-28P01615 120 aa5.66□□□□□ -1.5
VPS53-203ENST00000401468 TAL2Q16559 108 aa5.66□□□□□ -1.5
VPS53-203ENST00000401468 MUSTN1Q8IVN3 82 aa5.66□□□□□ -1.5
VPS53-203ENST00000401468 LINC00167Q96N53 147 aa5.66□□□□□ -1.5
VPS53-203ENST00000401468 UQCR10Q9UDW1 63 aa5.66□□□□□ -1.5
VPS53-203ENST00000401468 IGLV6-57P01721 117 aa5.65□□□□□ -1.5
VPS53-203ENST00000401468 PRR3P79522 188 aaKnown RBP5.65□□□□□ -1.5
VPS53-203ENST00000401468 NKAPP1Q8N9T2 125 aa5.65□□□□□ -1.5
VPS53-203ENST00000401468 MT1HL1P0DM35 61 aa5.64□□□□□ -1.51
VPS53-203ENST00000401468 NPC2P61916 151 aa5.64□□□□□ -1.51
VPS53-203ENST00000401468 SRSF9Q13242 221 aaKnown RBP eCLIP5.64□□□□□ -1.51
VPS53-203ENST00000401468 PSORS1C2Q9UIG4 136 aa5.64□□□□□ -1.51
VPS53-203ENST00000401468 PCP4L1A6NKN8 68 aa5.63□□□□□ -1.51
VPS53-203ENST00000401468 OXTP01178 125 aa5.63□□□□□ -1.51
VPS53-203ENST00000401468 SPRR1AP35321 89 aa5.63□□□□□ -1.51
VPS53-203ENST00000401468 LINC00337Q8N6G1 96 aa5.63□□□□□ -1.51
VPS53-203ENST00000401468 KCNQ1DNQ9H478 68 aa5.63□□□□□ -1.51
VPS53-203ENST00000401468 KRTAP4-16G5E9R7 235 aaPredicted RBP5.62□□□□□ -1.51
VPS53-203ENST00000401468 NCR3O14931 201 aa5.62□□□□□ -1.51
VPS53-203ENST00000401468 HIST1H4GQ99525 98 aa5.62□□□□□ -1.51
VPS53-203ENST00000401468 LRP2P98164 4655 aa5.61□□□□□ -1.51
VPS53-203ENST00000401468 TRBV10-3A0A0K0K1G6 114 aa5.61□□□□□ -1.51
VPS53-203ENST00000401468 A4D1N5 150 aa5.61□□□□□ -1.51
VPS53-203ENST00000401468 GAGE10A6NGK3 116 aa5.61□□□□□ -1.51
VPS53-203ENST00000401468 RPL37AP8A6NKH3 93 aa5.61□□□□□ -1.51
VPS53-203ENST00000401468 PRYO14603 147 aa5.61□□□□□ -1.51
VPS53-203ENST00000401468 UBE2BP63146 152 aa5.61□□□□□ -1.51
VPS53-203ENST00000401468 HSD52Q0P140 79 aa5.61□□□□□ -1.51
VPS53-203ENST00000401468 KRTAP13-1Q8IUC0 172 aa5.61□□□□□ -1.51
VPS53-203ENST00000401468 CEND1Q8N111 149 aa5.61□□□□□ -1.51
VPS53-203ENST00000401468 BCE1O60756 84 aa5.6□□□□□ -1.51
VPS53-203ENST00000401468 DDTP30046 118 aa5.6□□□□□ -1.51
VPS53-203ENST00000401468 TMEM126AQ9H061 195 aa5.6□□□□□ -1.51
VPS53-203ENST00000401468 PRO1933Q9H354 126 aa5.6□□□□□ -1.51
VPS53-203ENST00000401468 TRAV13-2A0A0B4J235 113 aa5.59□□□□□ -1.51
VPS53-203ENST00000401468 TSTD3H0UI37 97 aa5.59□□□□□ -1.51
VPS53-203ENST00000401468 H0Y9J4 135 aa5.59□□□□□ -1.51
VPS53-203ENST00000401468 IGLV7-43P04211 117 aa5.59□□□□□ -1.51
VPS53-203ENST00000401468 REG3GQ6UW15 175 aa5.59□□□□□ -1.51
VPS53-203ENST00000401468 A0A0B4J2C4 111 aa5.58□□□□□ -1.52
VPS53-203ENST00000401468 A0A1B0GWB2 263 aa5.58□□□□□ -1.52
VPS53-203ENST00000401468 CFC1BP0CG36 223 aa5.58□□□□□ -1.52
VPS53-203ENST00000401468 CFC1P0CG37 223 aa5.58□□□□□ -1.52
VPS53-203ENST00000401468 FXYD2P54710 66 aa5.58□□□□□ -1.52
VPS53-203ENST00000401468 C1orf137Q5JT78 98 aa5.58□□□□□ -1.52
VPS53-203ENST00000401468 CBY1Q9Y3M2 126 aa5.58□□□□□ -1.52
VPS53-203ENST00000401468 TNXBP22105 4242 aa5.57□□□□□ -1.52
VPS53-203ENST00000401468 TRAV23DV6A0A075B6W5 121 aa5.57□□□□□ -1.52
VPS53-203ENST00000401468 S100A7L2Q5SY68 101 aa5.57□□□□□ -1.52
VPS53-203ENST00000401468 TRBV7-6A0A0J9YX20 115 aa5.56□□□□□ -1.52
VPS53-203ENST00000401468 ZNF73O43830 326 aaPredicted RBP5.56□□□□□ -1.52
VPS53-203ENST00000401468 ZNF861PO60384 105 aa5.56□□□□□ -1.52
VPS53-203ENST00000401468 SPINK6Q6UWN8 80 aa5.56□□□□□ -1.52
VPS53-203ENST00000401468 FAT4Q6V0I7 4981 aa5.55□□□□□ -1.52
VPS53-203ENST00000401468 A6NDN8 102 aa5.54□□□□□ -1.52
VPS53-203ENST00000401468 B5MCH6 92 aa5.54□□□□□ -1.52
VPS53-203ENST00000401468 RPL28P46779 137 aaKnown RBP5.54□□□□□ -1.52
VPS53-203ENST00000401468 BVES-AS1Q5T3Y7 98 aa5.54□□□□□ -1.52
VPS53-203ENST00000401468 Q6ZRX8 168 aa5.54□□□□□ -1.52
VPS53-203ENST00000401468 OR13C6PQ8NH95 151 aa5.54□□□□□ -1.52
VPS53-203ENST00000401468 SMIM11BQ8TCY0 68 aa5.54□□□□□ -1.52
VPS53-203ENST00000401468 RPL13AP40429 203 aaKnown RBP5.53□□□□□ -1.52
VPS53-203ENST00000401468 ELOF1P60002 83 aaKnown RBP5.53□□□□□ -1.52
VPS53-203ENST00000401468 DIRC1Q969H9 104 aa5.53□□□□□ -1.52
VPS53-203ENST00000401468 PRO1854Q9UHT4 67 aa5.53□□□□□ -1.52
VPS53-203ENST00000401468 MUC2Q02817 5179 aa5.52□□□□□ -1.53
VPS53-203ENST00000401468 M0R143 59 aa5.52□□□□□ -1.53
VPS53-203ENST00000401468 PRLHP81277 87 aa5.52□□□□□ -1.53
VPS53-203ENST00000401468 FAM19A1Q7Z5A9 133 aa5.52□□□□□ -1.53
VPS53-203ENST00000401468 SMCR5Q8TEV8 140 aa5.52□□□□□ -1.53
VPS53-203ENST00000401468 Q9BRP9 147 aa5.52□□□□□ -1.53
VPS53-203ENST00000401468 ETDCA0A1B0GVM5 59 aa5.51□□□□□ -1.53
VPS53-203ENST00000401468 C6orf99Q4VX62 202 aa5.51□□□□□ -1.53
VPS53-203ENST00000401468 RAB37Q96AX2 223 aa5.51□□□□□ -1.53
VPS53-203ENST00000401468 LINC01600Q96MT4 127 aa5.51□□□□□ -1.53
VPS53-203ENST00000401468 NHP2Q9NX24 153 aaKnown RBP5.51□□□□□ -1.53
VPS53-203ENST00000401468 KRTAP1-4P0C5Y4 121 aa5.5□□□□□ -1.53
VPS53-203ENST00000401468 UBE2AP49459 152 aa5.5□□□□□ -1.53
VPS53-203ENST00000401468 K7ERJ3 54 aa5.49□□□□□ -1.53
VPS53-203ENST00000401468 COX7BP24311 80 aa5.49□□□□□ -1.53
VPS53-203ENST00000401468 HINT1P49773 126 aaPredicted RBP5.49□□□□□ -1.53
VPS53-203ENST00000401468 KRTAP10-8P60410 259 aa5.48□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 884.1 ms