RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 DIRC1Q969H9 104 aa8.74□□□□□ -1.01
CCDC3-202ENST00000378839 A0A0U1RQV1 116 aa8.73□□□□□ -1.01
CCDC3-202ENST00000378839 SERTAD4-AS1Q5TG53 156 aa8.73□□□□□ -1.01
CCDC3-202ENST00000378839 SCXQ7RTU7 201 aa8.73□□□□□ -1.01
CCDC3-202ENST00000378839 ELOF1P60002 83 aaKnown RBP8.73□□□□□ -1.01
CCDC3-202ENST00000378839 TMEM258P61165 79 aa8.73□□□□□ -1.01
CCDC3-202ENST00000378839 HAMPP81172 84 aa8.73□□□□□ -1.01
CCDC3-202ENST00000378839 SYCNQ0VAF6 134 aa8.72□□□□□ -1.01
CCDC3-202ENST00000378839 Q6JHZ5 121 aa8.72□□□□□ -1.01
CCDC3-202ENST00000378839 Q6ZQT0 140 aa8.72□□□□□ -1.01
CCDC3-202ENST00000378839 DNAH7Q8WXX0 4024 aa8.72□□□□□ -1.01
CCDC3-202ENST00000378839 M0R378 163 aa8.72□□□□□ -1.01
CCDC3-202ENST00000378839 TRAV10A0A0B4J240 114 aa8.71□□□□□ -1.01
CCDC3-202ENST00000378839 Q5XG85 94 aa8.71□□□□□ -1.01
CCDC3-202ENST00000378839 COX7BP24311 80 aa8.71□□□□□ -1.02
CCDC3-202ENST00000378839 UPK3BQ9BT76 320 aa8.7□□□□□ -1.02
CCDC3-202ENST00000378839 FAM168BA1KXE4 195 aa8.7□□□□□ -1.02
CCDC3-202ENST00000378839 RBM3P98179 157 aaKnown RBP8.7□□□□□ -1.02
CCDC3-202ENST00000378839 KRTAP7-1Q8IUC3 87 aa8.7□□□□□ -1.02
CCDC3-202ENST00000378839 CSMD3Q7Z407 3707 aa8.7□□□□□ -1.02
CCDC3-202ENST00000378839 LAMTOR3Q9UHA4 124 aa8.69□□□□□ -1.02
CCDC3-202ENST00000378839 LINC00336Q6ZUF6 198 aa8.69□□□□□ -1.02
CCDC3-202ENST00000378839 LINC00528Q8N1L1 170 aa8.69□□□□□ -1.02
CCDC3-202ENST00000378839 MGAM2Q2M2H8 2515 aa8.68□□□□□ -1.02
CCDC3-202ENST00000378839 LOC110117498A0A087WWA1 95 aa8.68□□□□□ -1.02
CCDC3-202ENST00000378839 RMI2Q96E14 147 aa8.68□□□□□ -1.02
CCDC3-202ENST00000378839 C7orf33Q8WU49 177 aa8.67□□□□□ -1.02
CCDC3-202ENST00000378839 TRBV7-6A0A0J9YX20 115 aa8.66□□□□□ -1.02
CCDC3-202ENST00000378839 FAM236DA0A1B0GTK5 79 aa8.66□□□□□ -1.02
CCDC3-202ENST00000378839 FAM236CP0DP71 79 aa8.66□□□□□ -1.02
CCDC3-202ENST00000378839 RPS28P62857 69 aaKnown RBP8.65□□□□□ -1.02
CCDC3-202ENST00000378839 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP8.65□□□□□ -1.02
CCDC3-202ENST00000378839 KRTAP1-5Q9BYS1 174 aa8.65□□□□□ -1.02
CCDC3-202ENST00000378839 LINC00474Q9P2X8 69 aa8.65□□□□□ -1.02
CCDC3-202ENST00000378839 MPLKIPQ8TAP9 179 aa8.65□□□□□ -1.03
CCDC3-202ENST00000378839 STAB2Q8WWQ8 2551 aa8.64□□□□□ -1.03
CCDC3-202ENST00000378839 F8WDY8 70 aa8.64□□□□□ -1.03
CCDC3-202ENST00000378839 DYNC2H1Q8NCM8 4307 aaKnown RBP8.64□□□□□ -1.03
CCDC3-202ENST00000378839 KCNQ1DNQ9H478 68 aa8.63□□□□□ -1.03
CCDC3-202ENST00000378839 TRBV7-4A0A0J9YYF1 115 aa8.63□□□□□ -1.03
CCDC3-202ENST00000378839 RPL37AP8A6NKH3 93 aa8.63□□□□□ -1.03
CCDC3-202ENST00000378839 TLX1NBP0CAT3 122 aa8.63□□□□□ -1.03
CCDC3-202ENST00000378839 BRK1Q8WUW1 75 aa8.63□□□□□ -1.03
CCDC3-202ENST00000378839 UBL5Q9BZL1 73 aa8.62□□□□□ -1.03
CCDC3-202ENST00000378839 F8WEM9 126 aa8.61□□□□□ -1.03
CCDC3-202ENST00000378839 KRTAP4-16G5E9R7 235 aaPredicted RBP8.6□□□□□ -1.03
CCDC3-202ENST00000378839 NKAPP1Q8N9T2 125 aa8.6□□□□□ -1.03
CCDC3-202ENST00000378839 Q6ZVQ6 151 aa8.59□□□□□ -1.03
CCDC3-202ENST00000378839 Q9BRP9 147 aa8.59□□□□□ -1.03
CCDC3-202ENST00000378839 PLECQ15149 4684 aaKnown RBP8.59□□□□□ -1.03
CCDC3-202ENST00000378839 LINC01547P58512 204 aaPredicted RBP8.59□□□□□ -1.04
CCDC3-202ENST00000378839 Q8N9L7 120 aa8.59□□□□□ -1.04
CCDC3-202ENST00000378839 PLA2G2DQ9UNK4 145 aa8.59□□□□□ -1.04
CCDC3-202ENST00000378839 IGLV1-50A0A075B6I6 118 aa8.58□□□□□ -1.04
CCDC3-202ENST00000378839 LRCOL1A6NCL2 159 aa8.58□□□□□ -1.04
CCDC3-202ENST00000378839 TENM2Q9NT68 2774 aa8.58□□□□□ -1.04
CCDC3-202ENST00000378839 Q8N377 158 aa8.57□□□□□ -1.04
CCDC3-202ENST00000378839 DEFB105AQ8NG35 78 aa8.57□□□□□ -1.04
CCDC3-202ENST00000378839 IGLV5-37A0A075B6J1 123 aa8.56□□□□□ -1.04
CCDC3-202ENST00000378839 ATP5EP2Q5VTU8 51 aa8.56□□□□□ -1.04
CCDC3-202ENST00000378839 H3BQ85 93 aa8.55□□□□□ -1.04
CCDC3-202ENST00000378839 SPRR1AP35321 89 aa8.55□□□□□ -1.04
CCDC3-202ENST00000378839 H7BZZ5 65 aa8.55□□□□□ -1.04
CCDC3-202ENST00000378839 ST20-AS1Q8NBB2 130 aa8.55□□□□□ -1.04
CCDC3-202ENST00000378839 Q6ZRX8 168 aa8.54□□□□□ -1.04
CCDC3-202ENST00000378839 ERC2-IT1O76042 136 aa8.54□□□□□ -1.04
CCDC3-202ENST00000378839 PDE6GP18545 87 aa8.53□□□□□ -1.04
CCDC3-202ENST00000378839 APLNQ9ULZ1 77 aa8.52□□□□□ -1.05
CCDC3-202ENST00000378839 FP248Q71RG6 208 aaPredicted RBP8.51□□□□□ -1.05
CCDC3-202ENST00000378839 MRPL55Q7Z7F7 128 aaKnown RBP8.51□□□□□ -1.05
CCDC3-202ENST00000378839 A0A096LNI7 61 aa8.51□□□□□ -1.05
CCDC3-202ENST00000378839 STARD9Q9P2P6 4700 aa8.5□□□□□ -1.05
CCDC3-202ENST00000378839 PRKDCP78527 4128 aaKnown RBP8.5□□□□□ -1.05
CCDC3-202ENST00000378839 A0A1W2PNN7 141 aa8.5□□□□□ -1.05
CCDC3-202ENST00000378839 PRYO14603 147 aa8.5□□□□□ -1.05
CCDC3-202ENST00000378839 PRO0628Q9UI54 55 aa8.49□□□□□ -1.05
CCDC3-202ENST00000378839 FAM229BQ4G0N7 80 aa8.48□□□□□ -1.05
CCDC3-202ENST00000378839 SERP1Q9Y6X1 66 aa8.48□□□□□ -1.05
CCDC3-202ENST00000378839 IGLV5-48A0A075B6I7 105 aa8.48□□□□□ -1.05
CCDC3-202ENST00000378839 KRTAP11-1Q8IUC1 163 aa8.47□□□□□ -1.05
CCDC3-202ENST00000378839 IGKV2-24A0A0C4DH68 120 aa8.47□□□□□ -1.05
CCDC3-202ENST00000378839 ETDCA0A1B0GVM5 59 aa8.47□□□□□ -1.05
CCDC3-202ENST00000378839 CXCL6P80162 114 aa8.47□□□□□ -1.05
CCDC3-202ENST00000378839 TNP2Q05952 138 aa8.47□□□□□ -1.05
CCDC3-202ENST00000378839 DHRS4-AS1Q9P1J3 65 aa8.47□□□□□ -1.05
CCDC3-202ENST00000378839 C3orf84H3BNL1 204 aa8.47□□□□□ -1.05
CCDC3-202ENST00000378839 IGLV2-33A0A075B6J2 118 aaPredicted RBP8.46□□□□□ -1.05
CCDC3-202ENST00000378839 PRR4Q16378 134 aa8.46□□□□□ -1.05
CCDC3-202ENST00000378839 TRAV7A0A075B6U4 112 aa8.46□□□□□ -1.06
CCDC3-202ENST00000378839 A0A1W2PNM2 257 aa8.45□□□□□ -1.06
CCDC3-202ENST00000378839 CNBPP62633 177 aaKnown RBP8.45□□□□□ -1.06
CCDC3-202ENST00000378839 CHTF8P0CG12 524 aa8.45□□□□□ -1.06
CCDC3-202ENST00000378839 SRRM2Q9UQ35 2752 aaKnown RBP8.44□□□□□ -1.06
CCDC3-202ENST00000378839 A0A0G2JQZ4 141 aa8.44□□□□□ -1.06
CCDC3-202ENST00000378839 REG3GQ6UW15 175 aa8.44□□□□□ -1.06
CCDC3-202ENST00000378839 C16orf90A8MZG2 172 aa8.43□□□□□ -1.06
CCDC3-202ENST00000378839 SMIM29Q86T20 159 aa8.43□□□□□ -1.06
CCDC3-202ENST00000378839 UBE2DNLQ8IWF7 75 aa8.43□□□□□ -1.06
CCDC3-202ENST00000378839 BPY2O14599 106 aa8.43□□□□□ -1.06
CCDC3-202ENST00000378839 B9D2Q9BPU9 175 aa8.43□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms