RNA–Protein interactions for RNA: ENST00000360264.7

CUX1-203, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CUX1, Length 13,762 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-203ENST00000360264 RPS28P62857 69 aaKnown RBP6.68□□□□□ -1.34
CUX1-203ENST00000360264 LOC101927531A0A1B0GV80 90 aa6.67□□□□□ -1.34
CUX1-203ENST00000360264 URB1-AS1Q96HZ7 61 aa6.67□□□□□ -1.34
CUX1-203ENST00000360264 ASH1LQ9NR48 2969 aaKnown RBP6.67□□□□□ -1.34
CUX1-203ENST00000360264 DNAH10OSP0CZ25 163 aa6.67□□□□□ -1.34
CUX1-203ENST00000360264 Q6ZQT0 140 aa6.67□□□□□ -1.34
CUX1-203ENST00000360264 TRBV7-4A0A0J9YYF1 115 aa6.66□□□□□ -1.34
CUX1-203ENST00000360264 VPREB1P12018 145 aa6.66□□□□□ -1.34
CUX1-203ENST00000360264 A0A096LNJ9 63 aa6.66□□□□□ -1.34
CUX1-203ENST00000360264 A8MWP4 228 aa6.66□□□□□ -1.34
CUX1-203ENST00000360264 A0A1W2PPR1 153 aa6.65□□□□□ -1.34
CUX1-203ENST00000360264 COX6B2Q6YFQ2 88 aa6.64□□□□□ -1.35
CUX1-203ENST00000360264 FAM19A4Q96LR4 140 aa6.64□□□□□ -1.35
CUX1-203ENST00000360264 LINC00476Q8WZB0 136 aa6.64□□□□□ -1.35
CUX1-203ENST00000360264 WWC2-AS2Q96NR7 200 aa6.64□□□□□ -1.35
CUX1-203ENST00000360264 RPL37AP61513 92 aaKnown RBP6.63□□□□□ -1.35
CUX1-203ENST00000360264 CELSR2Q9HCU4 2923 aa6.63□□□□□ -1.35
CUX1-203ENST00000360264 LINC00315P59091 139 aa6.63□□□□□ -1.35
CUX1-203ENST00000360264 KALRNO60229 2985 aa6.62□□□□□ -1.35
CUX1-203ENST00000360264 ERC2-IT1O76042 136 aa6.62□□□□□ -1.35
CUX1-203ENST00000360264 CDIP1Q9H305 208 aa6.61□□□□□ -1.35
CUX1-203ENST00000360264 COL4A2P08572 1712 aa6.61□□□□□ -1.35
CUX1-203ENST00000360264 C5orf42Q9H799 3197 aa6.61□□□□□ -1.35
CUX1-203ENST00000360264 J3QL48 77 aa6.61□□□□□ -1.35
CUX1-203ENST00000360264 NF1P21359 2839 aa6.6□□□□□ -1.35
CUX1-203ENST00000360264 Q9UF83 564 aa6.6□□□□□ -1.35
CUX1-203ENST00000360264 PHF5AQ7RTV0 110 aaKnown RBP6.6□□□□□ -1.35
CUX1-203ENST00000360264 SPINT4Q6UDR6 99 aa6.6□□□□□ -1.35
CUX1-203ENST00000360264 Q96NJ1 140 aa6.6□□□□□ -1.35
CUX1-203ENST00000360264 LINC00588Q9Y4M8 146 aa6.6□□□□□ -1.35
CUX1-203ENST00000360264 Q8NAQ8 132 aa6.59□□□□□ -1.35
CUX1-203ENST00000360264 PRUNE2Q8WUY3 3088 aa6.59□□□□□ -1.35
CUX1-203ENST00000360264 TM2D3Q9BRN9 247 aa6.58□□□□□ -1.36
CUX1-203ENST00000360264 UQCR11O14957 56 aa6.58□□□□□ -1.36
CUX1-203ENST00000360264 LINC00304Q8N9R0 145 aa6.57□□□□□ -1.36
CUX1-203ENST00000360264 ST20-AS1Q8NBB2 130 aa6.57□□□□□ -1.36
CUX1-203ENST00000360264 CHTF8P0CG12 524 aa6.56□□□□□ -1.36
CUX1-203ENST00000360264 NIPBLQ6KC79 2804 aaeCLIP6.56□□□□□ -1.363e-10■■■■■ 76.4
CUX1-203ENST00000360264 CRIPTQ9P021 101 aa6.56□□□□□ -1.36
CUX1-203ENST00000360264 CRYBG3Q68DQ2 2970 aa6.55□□□□□ -1.36
CUX1-203ENST00000360264 CYP4F30PQ9H0H9 118 aa6.55□□□□□ -1.36
CUX1-203ENST00000360264 IGLV6-57P01721 117 aa6.55□□□□□ -1.36
CUX1-203ENST00000360264 FAM218AQ96MZ4 157 aa6.55□□□□□ -1.36
CUX1-203ENST00000360264 MRPL34Q9BQ48 92 aaKnown RBP6.55□□□□□ -1.36
CUX1-203ENST00000360264 LINC00336Q6ZUF6 198 aa6.54□□□□□ -1.36
CUX1-203ENST00000360264 IGLV8-61A0A075B6I0 122 aa6.53□□□□□ -1.36
CUX1-203ENST00000360264 NBEAQ8NFP9 2946 aa6.53□□□□□ -1.36
CUX1-203ENST00000360264 KLK9Q2XQG4 91 aa6.53□□□□□ -1.36
CUX1-203ENST00000360264 TACC2O95359 2948 aa6.52□□□□□ -1.37
CUX1-203ENST00000360264 KCNQ1DNQ9H478 68 aa6.52□□□□□ -1.37
CUX1-203ENST00000360264 RBM12B-AS1Q9P1G2 102 aa6.52□□□□□ -1.37
CUX1-203ENST00000360264 SSBP3-AS1Q7Z2R9 100 aa6.51□□□□□ -1.37
CUX1-203ENST00000360264 VPS13AQ96RL7 3174 aa6.51□□□□□ -1.37
CUX1-203ENST00000360264 LRBAP50851 2863 aa6.51□□□□□ -1.37
CUX1-203ENST00000360264 KRTAP24-1Q3LI83 254 aa6.51□□□□□ -1.37
CUX1-203ENST00000360264 LINC01600Q96MT4 127 aa6.5□□□□□ -1.37
CUX1-203ENST00000360264 PRO0461Q9UI25 63 aa6.49□□□□□ -1.37
CUX1-203ENST00000360264 ZZEF1O43149 2961 aa6.48□□□□□ -1.37
CUX1-203ENST00000360264 DCHS2Q6V1P9 2916 aa6.48□□□□□ -1.37
CUX1-203ENST00000360264 C4orf26Q17RF5 130 aa6.48□□□□□ -1.37
CUX1-203ENST00000360264 COA5Q86WW8 74 aa6.47□□□□□ -1.37
CUX1-203ENST00000360264 IGLV1-50A0A075B6I6 118 aa6.47□□□□□ -1.37
CUX1-203ENST00000360264 APLNQ9ULZ1 77 aa6.47□□□□□ -1.37
CUX1-203ENST00000360264 ZNF861PO60384 105 aa6.47□□□□□ -1.37
CUX1-203ENST00000360264 GOLGB1Q14789 3259 aaKnown RBP6.46□□□□□ -1.38
CUX1-203ENST00000360264 LAMA1P25391 3075 aa6.46□□□□□ -1.38
CUX1-203ENST00000360264 MIR22HGQ0VDD5 57 aa6.46□□□□□ -1.38
CUX1-203ENST00000360264 IGFL1Q6UW32 110 aa6.46□□□□□ -1.38
CUX1-203ENST00000360264 K7EQZ3 153 aa6.45□□□□□ -1.38
CUX1-203ENST00000360264 PRR34Q9NV39 138 aa6.45□□□□□ -1.38
CUX1-203ENST00000360264 A0A1B0GVX0 72 aa6.45□□□□□ -1.38
CUX1-203ENST00000360264 PLA2G2DQ9UNK4 145 aa6.45□□□□□ -1.38
CUX1-203ENST00000360264 TENM3Q9P273 2699 aa6.44□□□□□ -1.38
CUX1-203ENST00000360264 HIVEP1P15822 2718 aa6.44□□□□□ -1.38
CUX1-203ENST00000360264 FAM168BA1KXE4 195 aa6.44□□□□□ -1.38
CUX1-203ENST00000360264 LINC00528Q8N1L1 170 aa6.44□□□□□ -1.38
CUX1-203ENST00000360264 SMCPP49901 116 aaPredicted RBP6.43□□□□□ -1.38
CUX1-203ENST00000360264 CSNK1G2-AS1Q8NCQ2 148 aa6.43□□□□□ -1.38
CUX1-203ENST00000360264 C8orf17Q9NRJ1 99 aa6.43□□□□□ -1.38
CUX1-203ENST00000360264 TLX1NBP0CAT3 122 aa6.43□□□□□ -1.38
CUX1-203ENST00000360264 PRR15Q8IV56 129 aa6.42□□□□□ -1.38
CUX1-203ENST00000360264 SPANXA2-OT1Q8N9U9 137 aa6.42□□□□□ -1.38
CUX1-203ENST00000360264 C15orf56Q8N910 161 aa6.41□□□□□ -1.38
CUX1-203ENST00000360264 OBSCN-AS1Q96MR7 158 aa6.41□□□□□ -1.38
CUX1-203ENST00000360264 LITAFQ99732 161 aa6.41□□□□□ -1.38
CUX1-203ENST00000360264 LUZP6Q538Z0 58 aa6.41□□□□□ -1.38
CUX1-203ENST00000360264 CDC42SE1Q9NRR8 79 aa6.41□□□□□ -1.38
CUX1-203ENST00000360264 REV3LO60673 3130 aa6.41□□□□□ -1.38
CUX1-203ENST00000360264 COL12A1Q99715 3063 aa6.4□□□□□ -1.38
CUX1-203ENST00000360264 C19orf73Q9NVV2 129 aa6.4□□□□□ -1.39
CUX1-203ENST00000360264 K7EIL1 84 aa6.39□□□□□ -1.39
CUX1-203ENST00000360264 DSCR10P59022 87 aa6.39□□□□□ -1.39
CUX1-203ENST00000360264 CNBPP62633 177 aaKnown RBP6.38□□□□□ -1.39
CUX1-203ENST00000360264 TENM1Q9UKZ4 2725 aa6.38□□□□□ -1.39
CUX1-203ENST00000360264 A0A087WTM6 91 aa6.38□□□□□ -1.39
CUX1-203ENST00000360264 IGLV5-37A0A075B6J1 123 aa6.37□□□□□ -1.39
CUX1-203ENST00000360264 KLKP1Q107X0 134 aa6.36□□□□□ -1.39
CUX1-203ENST00000360264 C9orf129Q5T035 196 aaKnown RBP6.35□□□□□ -1.39
CUX1-203ENST00000360264 C9orf163Q8N9P6 203 aa6.35□□□□□ -1.39
CUX1-203ENST00000360264 CD164Q04900 197 aa6.34□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms