RNA–Protein interactions for RNA: ENST00000358808.6

CLIP1-202, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CLIP1, Length 5,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-202ENST00000358808 Q8NAQ8 132 aa6.82□□□□□ -1.32
CLIP1-202ENST00000358808 CDC42SE1Q9NRR8 79 aa6.82□□□□□ -1.32
CLIP1-202ENST00000358808 IGLV5-48A0A075B6I7 105 aa6.82□□□□□ -1.32
CLIP1-202ENST00000358808 C8orf17Q9NRJ1 99 aa6.81□□□□□ -1.32
CLIP1-202ENST00000358808 ACANP16112 2415 aa6.81□□□□□ -1.32
CLIP1-202ENST00000358808 LINC01546A6NGU7 62 aa6.8□□□□□ -1.32
CLIP1-202ENST00000358808 BRCA2P51587 3418 aa6.8□□□□□ -1.32
CLIP1-202ENST00000358808 CYP4F30PQ9H0H9 118 aa6.79□□□□□ -1.32
CLIP1-202ENST00000358808 IGLV5-45A0A087WSX0 123 aa6.79□□□□□ -1.32
CLIP1-202ENST00000358808 IGLV1-50A0A075B6I6 118 aa6.78□□□□□ -1.32
CLIP1-202ENST00000358808 CSNK1G2-AS1Q8NCQ2 148 aa6.78□□□□□ -1.32
CLIP1-202ENST00000358808 MKI67P46013 3256 aaKnown RBP6.78□□□□□ -1.32
CLIP1-202ENST00000358808 ZNF861PO60384 105 aa6.78□□□□□ -1.32
CLIP1-202ENST00000358808 A0A1B0GVX0 72 aa6.78□□□□□ -1.32
CLIP1-202ENST00000358808 LINC00483Q53H64 154 aa6.78□□□□□ -1.32
CLIP1-202ENST00000358808 FASNP49327 2511 aaKnown RBP6.77□□□□□ -1.33
CLIP1-202ENST00000358808 LAMA2P24043 3122 aaKnown RBP6.77□□□□□ -1.33
CLIP1-202ENST00000358808 IGFL1Q6UW32 110 aa6.77□□□□□ -1.33
CLIP1-202ENST00000358808 CAMK2N1Q7Z7J9 78 aa6.77□□□□□ -1.33
CLIP1-202ENST00000358808 Q6ZSA8 131 aa6.75□□□□□ -1.33
CLIP1-202ENST00000358808 RPS28P62857 69 aaKnown RBP6.75□□□□□ -1.33
CLIP1-202ENST00000358808 Q8N1X5 172 aa6.75□□□□□ -1.33
CLIP1-202ENST00000358808 ANAPC11Q9NYG5 84 aa6.75□□□□□ -1.33
CLIP1-202ENST00000358808 LINC00336Q6ZUF6 198 aa6.74□□□□□ -1.33
CLIP1-202ENST00000358808 COL27A1Q8IZC6 1860 aaPredicted RBP6.74□□□□□ -1.33
CLIP1-202ENST00000358808 PRR15Q8IV56 129 aa6.73□□□□□ -1.33
CLIP1-202ENST00000358808 A0A087WTM6 91 aa6.73□□□□□ -1.33
CLIP1-202ENST00000358808 LAMA3Q16787 3333 aa6.73□□□□□ -1.33
CLIP1-202ENST00000358808 LINC00528Q8N1L1 170 aa6.72□□□□□ -1.33
CLIP1-202ENST00000358808 K7EIL1 84 aa6.71□□□□□ -1.33
CLIP1-202ENST00000358808 FAM104AQ969W3 186 aa6.71□□□□□ -1.33
CLIP1-202ENST00000358808 USP24Q9UPU5 2620 aa6.71□□□□□ -1.34
CLIP1-202ENST00000358808 IGLV7-43P04211 117 aa6.71□□□□□ -1.34
CLIP1-202ENST00000358808 KRTAP10-11P60412 298 aa6.71□□□□□ -1.34
CLIP1-202ENST00000358808 KCNQ1DNQ9H478 68 aa6.71□□□□□ -1.34
CLIP1-202ENST00000358808 A0A0G2JQZ4 141 aa6.7□□□□□ -1.34
CLIP1-202ENST00000358808 A0A1W2PNN7 141 aa6.7□□□□□ -1.34
CLIP1-202ENST00000358808 PRRC2CQ9Y520 2896 aaKnown RBP6.69□□□□□ -1.34
CLIP1-202ENST00000358808 ERC2-IT1O76042 136 aa6.69□□□□□ -1.34
CLIP1-202ENST00000358808 C15orf56Q8N910 161 aa6.69□□□□□ -1.34
CLIP1-202ENST00000358808 LITAFQ99732 161 aa6.66□□□□□ -1.34
CLIP1-202ENST00000358808 RANBP2P49792 3224 aaKnown RBP6.65□□□□□ -1.34
CLIP1-202ENST00000358808 A0A096LNT2 108 aa6.65□□□□□ -1.35
CLIP1-202ENST00000358808 PSORS1C2Q9UIG4 136 aa6.65□□□□□ -1.35
CLIP1-202ENST00000358808 ANKRD17O75179 2603 aaKnown RBP6.64□□□□□ -1.35
CLIP1-202ENST00000358808 IGLV7-46A0A075B6I9 117 aa6.63□□□□□ -1.35
CLIP1-202ENST00000358808 C9orf163Q8N9P6 203 aa6.63□□□□□ -1.35
CLIP1-202ENST00000358808 EIF4EBP3O60516 100 aaPredicted RBP6.63□□□□□ -1.35
CLIP1-202ENST00000358808 CD164Q04900 197 aa6.63□□□□□ -1.35
CLIP1-202ENST00000358808 LCA10Q71F78 164 aa6.63□□□□□ -1.35
CLIP1-202ENST00000358808 PRR26Q8N8Z3 221 aa6.62□□□□□ -1.35
CLIP1-202ENST00000358808 Q8N377 158 aa6.62□□□□□ -1.35
CLIP1-202ENST00000358808 C19orf73Q9NVV2 129 aa6.62□□□□□ -1.35
CLIP1-202ENST00000358808 KRTAP1-3Q8IUG1 177 aa6.61□□□□□ -1.35
CLIP1-202ENST00000358808 SPRR4Q96PI1 79 aa6.61□□□□□ -1.35
CLIP1-202ENST00000358808 Q1T7F1 81 aa6.61□□□□□ -1.35
CLIP1-202ENST00000358808 HTTP42858 3142 aa6.61□□□□□ -1.35
CLIP1-202ENST00000358808 KRTAP10-3P60369 221 aa6.6□□□□□ -1.35
CLIP1-202ENST00000358808 TLX1NBP0CAT3 122 aa6.6□□□□□ -1.35
CLIP1-202ENST00000358808 KTN1-AS1Q86SY8 53 aa6.6□□□□□ -1.35
CLIP1-202ENST00000358808 A0A0C4DFX4 3053 aa6.59□□□□□ -1.35
CLIP1-202ENST00000358808 MGAM2Q2M2H8 2515 aa6.58□□□□□ -1.36
CLIP1-202ENST00000358808 HRES1P13985 223 aa6.58□□□□□ -1.36
CLIP1-202ENST00000358808 LINC00612Q8N6U2 182 aa6.56□□□□□ -1.36
CLIP1-202ENST00000358808 PLA2G2DQ9UNK4 145 aa6.56□□□□□ -1.36
CLIP1-202ENST00000358808 EPG5Q9HCE0 2579 aa6.55□□□□□ -1.36
CLIP1-202ENST00000358808 C5orf42Q9H799 3197 aa6.55□□□□□ -1.36
CLIP1-202ENST00000358808 KLK9Q2XQG4 91 aa6.55□□□□□ -1.36
CLIP1-202ENST00000358808 UNC80Q8N2C7 3258 aa6.55□□□□□ -1.36
CLIP1-202ENST00000358808 ATRQ13535 2644 aa6.55□□□□□ -1.36
CLIP1-202ENST00000358808 BPTFQ12830 3046 aa6.55□□□□□ -1.36
CLIP1-202ENST00000358808 PRR34Q9NV39 138 aa6.54□□□□□ -1.36
CLIP1-202ENST00000358808 KRTAP1-1Q07627 177 aa6.54□□□□□ -1.36
CLIP1-202ENST00000358808 FLNBO75369 2602 aaKnown RBP6.53□□□□□ -1.36
CLIP1-202ENST00000358808 A0A1B0GU33 70 aa6.53□□□□□ -1.36
CLIP1-202ENST00000358808 CASC10Q5T4H9 136 aa6.52□□□□□ -1.37
CLIP1-202ENST00000358808 S4R3F8 94 aa6.52□□□□□ -1.37
CLIP1-202ENST00000358808 PRUNE2Q8WUY3 3088 aa6.52□□□□□ -1.37
CLIP1-202ENST00000358808 KLKP1Q107X0 134 aa6.51□□□□□ -1.37
CLIP1-202ENST00000358808 CSAG1Q6PB30 78 aa6.5□□□□□ -1.37
CLIP1-202ENST00000358808 CNBPP62633 177 aaKnown RBP6.5□□□□□ -1.37
CLIP1-202ENST00000358808 CDH23Q9H251 3354 aa6.49□□□□□ -1.37
CLIP1-202ENST00000358808 SPANXA2-OT1Q8N9U9 137 aa6.49□□□□□ -1.37
CLIP1-202ENST00000358808 A0A0A0MQY5 61 aa6.49□□□□□ -1.37
CLIP1-202ENST00000358808 WIPF1O43516 503 aa6.49□□□□□ -1.37
CLIP1-202ENST00000358808 TNP2Q05952 138 aa6.49□□□□□ -1.37
CLIP1-202ENST00000358808 H7BZZ5 65 aa6.49□□□□□ -1.37
CLIP1-202ENST00000358808 MAST4O15021 2626 aa6.47□□□□□ -1.37
CLIP1-202ENST00000358808 A0A1W2PNM2 257 aa6.47□□□□□ -1.37
CLIP1-202ENST00000358808 GIG44P09565 113 aaPredicted RBP6.45□□□□□ -1.38
CLIP1-202ENST00000358808 R4GN34 69 aa6.44□□□□□ -1.38
CLIP1-202ENST00000358808 DMAC1Q96GE9 116 aa6.42□□□□□ -1.38
CLIP1-202ENST00000358808 XIRP2A4UGR9 3374 aa6.42□□□□□ -1.38
CLIP1-202ENST00000358808 HECTD1Q9ULT8 2610 aa6.41□□□□□ -1.38
CLIP1-202ENST00000358808 CHD7Q9P2D1 2997 aa6.41□□□□□ -1.38
CLIP1-202ENST00000358808 SPINK7P58062 85 aa6.41□□□□□ -1.38
CLIP1-202ENST00000358808 SEC61BP60468 96 aaKnown RBP6.4□□□□□ -1.38
CLIP1-202ENST00000358808 ZCCHC13Q8WW36 166 aaKnown RBP6.4□□□□□ -1.38
CLIP1-202ENST00000358808 PLAC4Q8WY50 150 aa6.4□□□□□ -1.38
CLIP1-202ENST00000358808 CHD9Q3L8U1 2897 aa6.4□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms