RNA–Protein interactions for RNA: ENST00000356922.5

LIG4-201, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,096 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-201ENST00000356922 MIR7-3HGQ8N6C7 128 aa2.55□□□□□ -2
LIG4-201ENST00000356922 COPS9Q8WXC6 57 aa2.55□□□□□ -2
LIG4-201ENST00000356922 LITAFQ99732 161 aa2.55□□□□□ -2
LIG4-201ENST00000356922 SPANXCQ9NY87 97 aa2.55□□□□□ -2
LIG4-201ENST00000356922 C9JAW5 83 aa2.55□□□□□ -2
LIG4-201ENST00000356922 Q6ZSA8 131 aa2.55□□□□□ -2
LIG4-201ENST00000356922 CIRBP-AS1Q8TBR5 109 aa2.55□□□□□ -2
LIG4-201ENST00000356922 NDUFC2-KCTD14E9PQ53 114 aa2.54□□□□□ -2
LIG4-201ENST00000356922 SMR3BP02814 79 aaPredicted RBP2.54□□□□□ -2
LIG4-201ENST00000356922 KRTAP4-5Q9BYR2 181 aa2.54□□□□□ -2
LIG4-201ENST00000356922 A0A0J9YXY3 114 aa2.54□□□□□ -2
LIG4-201ENST00000356922 Q1RN00 199 aa2.54□□□□□ -2
LIG4-201ENST00000356922 SERTAD4-AS1Q5TG53 156 aa2.54□□□□□ -2
LIG4-201ENST00000356922 SOSTDC1Q6X4U4 206 aa2.54□□□□□ -2
LIG4-201ENST00000356922 PKHD1L1Q86WI1 4243 aa2.54□□□□□ -2
LIG4-201ENST00000356922 H7C2G1 150 aa2.54□□□□□ -2
LIG4-201ENST00000356922 C9orf153Q5TBE3 101 aa2.54□□□□□ -2
LIG4-201ENST00000356922 SCXQ7RTU7 201 aa2.54□□□□□ -2
LIG4-201ENST00000356922 FLG2Q5D862 2391 aaPredicted RBP2.53□□□□□ -2
LIG4-201ENST00000356922 A0A087WYN8 130 aa2.53□□□□□ -2
LIG4-201ENST00000356922 K7ERJ3 54 aa2.53□□□□□ -2
LIG4-201ENST00000356922 SEC61GP60059 68 aa2.53□□□□□ -2
LIG4-201ENST00000356922 SPACA4Q8TDM5 124 aa2.53□□□□□ -2
LIG4-201ENST00000356922 HERC1Q15751 4861 aa2.53□□□□□ -2
LIG4-201ENST00000356922 NCR3O14931 201 aa2.53□□□□□ -2
LIG4-201ENST00000356922 TEN1Q86WV5 123 aa2.53□□□□□ -2
LIG4-201ENST00000356922 SND1-IT1Q9HBX3 110 aa2.53□□□□□ -2
LIG4-201ENST00000356922 IGKV2-28A0A075B6P5 120 aa2.52□□□□□ -2.01
LIG4-201ENST00000356922 LOC107984156A0A0G2JMH3 177 aa2.52□□□□□ -2.01
LIG4-201ENST00000356922 RPL37AP8A6NKH3 93 aa2.52□□□□□ -2.01
LIG4-201ENST00000356922 IGKV2D-28P01615 120 aa2.52□□□□□ -2.01
LIG4-201ENST00000356922 SCGB1C2P0DMR2 95 aa2.52□□□□□ -2.01
LIG4-201ENST00000356922 FXYD2P54710 66 aa2.52□□□□□ -2.01
LIG4-201ENST00000356922 COX17Q14061 63 aa2.52□□□□□ -2.01
LIG4-201ENST00000356922 Q6Q795 121 aa2.52□□□□□ -2.01
LIG4-201ENST00000356922 ARL17AQ8IVW1 177 aa2.52□□□□□ -2.01
LIG4-201ENST00000356922 TLX1NBP0CAT3 122 aa2.52□□□□□ -2.01
LIG4-201ENST00000356922 PSMB2P49721 201 aa2.52□□□□□ -2.01
LIG4-201ENST00000356922 V9GYY9 64 aa2.52□□□□□ -2.01
LIG4-201ENST00000356922 FAT3Q8TDW7 4589 aa2.52□□□□□ -2.01
LIG4-201ENST00000356922 A0A1B0GX51 115 aa2.52□□□□□ -2.01
LIG4-201ENST00000356922 PHF5AQ7RTV0 110 aaKnown RBP2.52□□□□□ -2.01
LIG4-201ENST00000356922 EPM2AB3EWF7 344 aa2.51□□□□□ -2.01
LIG4-201ENST00000356922 UBE2AP49459 152 aa2.51□□□□□ -2.01
LIG4-201ENST00000356922 CEND1Q8N111 149 aa2.51□□□□□ -2.01
LIG4-201ENST00000356922 HIGD1BQ9P298 99 aa2.51□□□□□ -2.01
LIG4-201ENST00000356922 KRTAP10-4P60372 401 aaPredicted RBP2.51□□□□□ -2.01
LIG4-201ENST00000356922 GAGE2AQ6NT46 116 aa2.51□□□□□ -2.01
LIG4-201ENST00000356922 SPANXDQ9BXN6 97 aa2.51□□□□□ -2.01
LIG4-201ENST00000356922 C1orf137Q5JT78 98 aa2.51□□□□□ -2.01
LIG4-201ENST00000356922 MUSTN1Q8IVN3 82 aa2.51□□□□□ -2.01
LIG4-201ENST00000356922 PLAC8Q9NZF1 115 aa2.51□□□□□ -2.01
LIG4-201ENST00000356922 PRO0461Q9UI25 63 aa2.51□□□□□ -2.01
LIG4-201ENST00000356922 ETDCA0A1B0GVM5 59 aa2.5□□□□□ -2.01
LIG4-201ENST00000356922 VPREB1P12018 145 aa2.5□□□□□ -2.01
LIG4-201ENST00000356922 RPS28P62857 69 aaKnown RBP2.5□□□□□ -2.01
LIG4-201ENST00000356922 TAL2Q16559 108 aa2.5□□□□□ -2.01
LIG4-201ENST00000356922 MRPL55Q7Z7F7 128 aaKnown RBP2.5□□□□□ -2.01
LIG4-201ENST00000356922 C22orf24Q9Y442 160 aa2.5□□□□□ -2.01
LIG4-201ENST00000356922 LINC00308Q8TCZ7 52 aa2.5□□□□□ -2.01
LIG4-201ENST00000356922 TNXBP22105 4242 aa2.5□□□□□ -2.01
LIG4-201ENST00000356922 UQCRQO14949 82 aa2.5□□□□□ -2.01
LIG4-201ENST00000356922 PLA2G1BP04054 148 aaKnown RBP2.5□□□□□ -2.01
LIG4-201ENST00000356922 HRCT1Q6UXD1 115 aa2.5□□□□□ -2.01
LIG4-201ENST00000356922 FAM19A1Q7Z5A9 133 aa2.5□□□□□ -2.01
LIG4-201ENST00000356922 C3orf22Q8N5N4 141 aa2.49□□□□□ -2.01
LIG4-201ENST00000356922 HIGD2AQ9BW72 106 aa2.49□□□□□ -2.01
LIG4-201ENST00000356922 PRO0628Q9UI54 55 aa2.49□□□□□ -2.01
LIG4-201ENST00000356922 M0R378 163 aa2.49□□□□□ -2.01
LIG4-201ENST00000356922 RPL37AP61513 92 aaKnown RBP2.49□□□□□ -2.01
LIG4-201ENST00000356922 LINC00167Q96N53 147 aa2.49□□□□□ -2.01
LIG4-201ENST00000356922 CDK2AP2O75956 126 aa2.49□□□□□ -2.01
LIG4-201ENST00000356922 ANKRD29Q8N6D5 301 aa2.49□□□□□ -2.01
LIG4-201ENST00000356922 LINC00337Q8N6G1 96 aa2.49□□□□□ -2.01
LIG4-201ENST00000356922 TRAV13-2A0A0B4J235 113 aa2.48□□□□□ -2.01
LIG4-201ENST00000356922 SLC25A20O43772 301 aa2.48□□□□□ -2.01
LIG4-201ENST00000356922 TRACP01848 142 aa2.48□□□□□ -2.01
LIG4-201ENST00000356922 TIMM17BO60830 172 aa2.48□□□□□ -2.01
LIG4-201ENST00000356922 RPL13AP40429 203 aaKnown RBP2.48□□□□□ -2.01
LIG4-201ENST00000356922 PSORS1C2Q9UIG4 136 aa2.48□□□□□ -2.01
LIG4-201ENST00000356922 FAM236AA0A1B0GUQ0 79 aa2.48□□□□□ -2.01
LIG4-201ENST00000356922 FAM236BA0A1B0GV22 79 aa2.48□□□□□ -2.01
LIG4-201ENST00000356922 COX6CP09669 75 aa2.48□□□□□ -2.01
LIG4-201ENST00000356922 TRBV10-3A0A0K0K1G6 114 aa2.47□□□□□ -2.01
LIG4-201ENST00000356922 H3BS24 57 aa2.47□□□□□ -2.01
LIG4-201ENST00000356922 LCE2CQ5TA81 110 aa2.47□□□□□ -2.01
LIG4-201ENST00000356922 REG3GQ6UW15 175 aa2.47□□□□□ -2.01
LIG4-201ENST00000356922 IGLV1-50A0A075B6I6 118 aa2.47□□□□□ -2.01
LIG4-201ENST00000356922 RPL28P46779 137 aaKnown RBP2.47□□□□□ -2.01
LIG4-201ENST00000356922 C4orf26Q17RF5 130 aa2.47□□□□□ -2.01
LIG4-201ENST00000356922 DIRC1Q969H9 104 aa2.47□□□□□ -2.01
LIG4-201ENST00000356922 PLA2G2DQ9UNK4 145 aa2.47□□□□□ -2.01
LIG4-201ENST00000356922 IGLV5-37A0A075B6J1 123 aa2.47□□□□□ -2.01
LIG4-201ENST00000356922 TRAV23DV6A0A075B6W5 121 aa2.47□□□□□ -2.01
LIG4-201ENST00000356922 TMEM258P61165 79 aa2.47□□□□□ -2.01
LIG4-201ENST00000356922 C1orf195Q5TG92 126 aa2.47□□□□□ -2.01
LIG4-201ENST00000356922 Q5VSD8 79 aa2.47□□□□□ -2.01
LIG4-201ENST00000356922 DEFB105AQ8NG35 78 aa2.47□□□□□ -2.01
LIG4-201ENST00000356922 CFC1BP0CG36 223 aa2.46□□□□□ -2.02
LIG4-201ENST00000356922 CFC1P0CG37 223 aa2.46□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 111 ms