RNA–Protein interactions for RNA: ENST00000345865.6

UPF3B-202, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3B, Length 2,335 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-202ENST00000345865 TRBV7-4A0A0J9YYF1 115 aa10.01□□□□□ -0.81
UPF3B-202ENST00000345865 ATOX1O00244 68 aa10□□□□□ -0.81
UPF3B-202ENST00000345865 KRTAP7-1Q8IUC3 87 aa10□□□□□ -0.81
UPF3B-202ENST00000345865 NKAPP1Q8N9T2 125 aa10□□□□□ -0.81
UPF3B-202ENST00000345865 UQCRQO14949 82 aa9.99□□□□□ -0.81
UPF3B-202ENST00000345865 ATP5EP2Q5VTU8 51 aa9.99□□□□□ -0.81
UPF3B-202ENST00000345865 DNAH7Q8WXX0 4024 aa9.98□□□□□ -0.81
UPF3B-202ENST00000345865 COX7CP15954 63 aa9.98□□□□□ -0.81
UPF3B-202ENST00000345865 RPL37AP8A6NKH3 93 aa9.98□□□□□ -0.81
UPF3B-202ENST00000345865 UPK3BQ9BT76 320 aa9.98□□□□□ -0.81
UPF3B-202ENST00000345865 Q6ZVQ6 151 aa9.97□□□□□ -0.81
UPF3B-202ENST00000345865 CSMD3Q7Z407 3707 aa9.97□□□□□ -0.81
UPF3B-202ENST00000345865 PDE6GP18545 87 aa9.96□□□□□ -0.81
UPF3B-202ENST00000345865 C9orf153Q5TBE3 101 aa9.96□□□□□ -0.81
UPF3B-202ENST00000345865 PLA2G2DQ9UNK4 145 aa9.96□□□□□ -0.81
UPF3B-202ENST00000345865 DYNC2H1Q8NCM8 4307 aaKnown RBP9.95□□□□□ -0.82
UPF3B-202ENST00000345865 KRTAP1-5Q9BYS1 174 aa9.95□□□□□ -0.82
UPF3B-202ENST00000345865 KRTAP4-16G5E9R7 235 aaPredicted RBP9.94□□□□□ -0.82
UPF3B-202ENST00000345865 GHRHP01286 108 aa9.94□□□□□ -0.82
UPF3B-202ENST00000345865 LINC01547P58512 204 aaPredicted RBP9.94□□□□□ -0.82
UPF3B-202ENST00000345865 IGLV1-50A0A075B6I6 118 aa9.93□□□□□ -0.82
UPF3B-202ENST00000345865 IGLV5-37A0A075B6J1 123 aa9.93□□□□□ -0.82
UPF3B-202ENST00000345865 RMI2Q96E14 147 aa9.93□□□□□ -0.82
UPF3B-202ENST00000345865 HAMPP81172 84 aa9.93□□□□□ -0.82
UPF3B-202ENST00000345865 CYSTM1Q9H1C7 97 aa9.93□□□□□ -0.82
UPF3B-202ENST00000345865 Q8N377 158 aa9.92□□□□□ -0.82
UPF3B-202ENST00000345865 Q9BRP9 147 aa9.92□□□□□ -0.82
UPF3B-202ENST00000345865 TENM2Q9NT68 2774 aa9.92□□□□□ -0.82
UPF3B-202ENST00000345865 DEFB105AQ8NG35 78 aa9.91□□□□□ -0.82
UPF3B-202ENST00000345865 SERP2Q8N6R1 65 aa9.91□□□□□ -0.82
UPF3B-202ENST00000345865 PLECQ15149 4684 aaKnown RBP9.91□□□□□ -0.82
UPF3B-202ENST00000345865 SPRR1AP35321 89 aa9.9□□□□□ -0.82
UPF3B-202ENST00000345865 Q6ZRX8 168 aa9.9□□□□□ -0.82
UPF3B-202ENST00000345865 FAM19A5Q7Z5A7 132 aaPredicted RBP9.9□□□□□ -0.82
UPF3B-202ENST00000345865 CRYGAP11844 174 aa9.9□□□□□ -0.82
UPF3B-202ENST00000345865 LOC107984640A0A0U1RRK4 108 aa9.88□□□□□ -0.83
UPF3B-202ENST00000345865 PRYO14603 147 aa9.88□□□□□ -0.83
UPF3B-202ENST00000345865 SCXQ7RTU7 201 aa9.87□□□□□ -0.83
UPF3B-202ENST00000345865 MRPL55Q7Z7F7 128 aaKnown RBP9.87□□□□□ -0.83
UPF3B-202ENST00000345865 ST20-AS1Q8NBB2 130 aa9.86□□□□□ -0.83
UPF3B-202ENST00000345865 CXCL6P80162 114 aa9.85□□□□□ -0.83
UPF3B-202ENST00000345865 DHRS4-AS1Q9P1J3 65 aa9.85□□□□□ -0.83
UPF3B-202ENST00000345865 ETDCA0A1B0GVM5 59 aa9.85□□□□□ -0.83
UPF3B-202ENST00000345865 ERC2-IT1O76042 136 aa9.85□□□□□ -0.83
UPF3B-202ENST00000345865 MDFIQ99750 246 aa9.84□□□□□ -0.83
UPF3B-202ENST00000345865 IGLV5-48A0A075B6I7 105 aa9.84□□□□□ -0.83
UPF3B-202ENST00000345865 APLNQ9ULZ1 77 aa9.84□□□□□ -0.83
UPF3B-202ENST00000345865 A0A096LNI7 61 aa9.83□□□□□ -0.84
UPF3B-202ENST00000345865 SMIM20Q8N5G0 67 aa9.81□□□□□ -0.84
UPF3B-202ENST00000345865 C3orf84H3BNL1 204 aa9.81□□□□□ -0.84
UPF3B-202ENST00000345865 IGKV2-24A0A0C4DH68 120 aa9.8□□□□□ -0.84
UPF3B-202ENST00000345865 A0A1W2PNN7 141 aa9.8□□□□□ -0.84
UPF3B-202ENST00000345865 TNP2Q05952 138 aa9.8□□□□□ -0.84
UPF3B-202ENST00000345865 CNBPP62633 177 aaKnown RBP9.79□□□□□ -0.84
UPF3B-202ENST00000345865 UBE2DNLQ8IWF7 75 aa9.79□□□□□ -0.84
UPF3B-202ENST00000345865 PSCAO43653 123 aa9.78□□□□□ -0.84
UPF3B-202ENST00000345865 REG3GQ6UW15 175 aa9.78□□□□□ -0.84
UPF3B-202ENST00000345865 IGLV2-33A0A075B6J2 118 aaPredicted RBP9.78□□□□□ -0.84
UPF3B-202ENST00000345865 A0A1W2PNM2 257 aa9.78□□□□□ -0.84
UPF3B-202ENST00000345865 C16orf90A8MZG2 172 aa9.78□□□□□ -0.84
UPF3B-202ENST00000345865 UBE2BP63146 152 aa9.78□□□□□ -0.84
UPF3B-202ENST00000345865 Q8N9L7 120 aa9.78□□□□□ -0.84
UPF3B-202ENST00000345865 STARD9Q9P2P6 4700 aa9.77□□□□□ -0.85
UPF3B-202ENST00000345865 PRKDCP78527 4128 aaKnown RBP9.77□□□□□ -0.85
UPF3B-202ENST00000345865 B9D2Q9BPU9 175 aa9.76□□□□□ -0.85
UPF3B-202ENST00000345865 NREPQ16612 68 aa9.76□□□□□ -0.85
UPF3B-202ENST00000345865 C1orf137Q5JT78 98 aa9.74□□□□□ -0.85
UPF3B-202ENST00000345865 CHTF8P0CG12 524 aa9.74□□□□□ -0.85
UPF3B-202ENST00000345865 SRRM2Q9UQ35 2752 aaKnown RBP9.74□□□□□ -0.85
UPF3B-202ENST00000345865 SMIM29Q86T20 159 aa9.73□□□□□ -0.85
UPF3B-202ENST00000345865 TRAV7A0A075B6U4 112 aa9.73□□□□□ -0.85
UPF3B-202ENST00000345865 BCE1O60756 84 aa9.73□□□□□ -0.85
UPF3B-202ENST00000345865 KRTAP11-1Q8IUC1 163 aa9.73□□□□□ -0.85
UPF3B-202ENST00000345865 VPS13DQ5THJ4 4388 aa9.73□□□□□ -0.85
UPF3B-202ENST00000345865 IGKV4-1P06312 121 aa9.72□□□□□ -0.85
UPF3B-202ENST00000345865 PRLHP81277 87 aa9.72□□□□□ -0.85
UPF3B-202ENST00000345865 C20orf197Q8N268 126 aa9.72□□□□□ -0.85
UPF3B-202ENST00000345865 BPY2O14599 106 aa9.71□□□□□ -0.85
UPF3B-202ENST00000345865 FUSP35637 526 aaKnown RBP eCLIP9.71□□□□□ -0.86
UPF3B-202ENST00000345865 LRCOL1A6NCL2 159 aa9.7□□□□□ -0.86
UPF3B-202ENST00000345865 Q8NBF4 154 aa9.7□□□□□ -0.86
UPF3B-202ENST00000345865 A0A0G2JQZ4 141 aa9.7□□□□□ -0.86
UPF3B-202ENST00000345865 PHF5AQ7RTV0 110 aaKnown RBP9.69□□□□□ -0.86
UPF3B-202ENST00000345865 TMEM258P61165 79 aa9.68□□□□□ -0.86
UPF3B-202ENST00000345865 SPRR4Q96PI1 79 aa9.68□□□□□ -0.86
UPF3B-202ENST00000345865 NBDYA0A0U1RRE5 68 aa9.67□□□□□ -0.86
UPF3B-202ENST00000345865 C14orf177Q52M58 125 aa9.67□□□□□ -0.86
UPF3B-202ENST00000345865 Q6ZRN7 208 aaPredicted RBP9.66□□□□□ -0.86
UPF3B-202ENST00000345865 LINC00476Q8WZB0 136 aa9.66□□□□□ -0.86
UPF3B-202ENST00000345865 KMT2AQ03164 3969 aa9.66□□□□□ -0.86
UPF3B-202ENST00000345865 C9orf163Q8N9P6 203 aa9.66□□□□□ -0.86
UPF3B-202ENST00000345865 HIGD2AQ9BW72 106 aa9.66□□□□□ -0.86
UPF3B-202ENST00000345865 A0A1B0GW54 56 aa9.65□□□□□ -0.86
UPF3B-202ENST00000345865 PANO1I0J062 215 aa9.64□□□□□ -0.87
UPF3B-202ENST00000345865 HECTD4Q9Y4D8 3996 aa9.64□□□□□ -0.87
UPF3B-202ENST00000345865 DNAH2Q9P225 4427 aa9.63□□□□□ -0.87
UPF3B-202ENST00000345865 DPH3Q96FX2 82 aa9.63□□□□□ -0.87
UPF3B-202ENST00000345865 SNURFQ9Y675 71 aa9.63□□□□□ -0.87
UPF3B-202ENST00000345865 IGFL1Q6UW32 110 aa9.62□□□□□ -0.87
UPF3B-202ENST00000345865 NUPR2A6NF83 97 aa9.62□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 63 ms