RNA–Protein interactions for RNA: ENST00000344722.5

SMC4-201, Transcript of structural maintenance of chromosomes 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMC4, Length 5,356 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-201ENST00000344722 A0A0G2JQZ4 141 aa11.76□□□□□ -0.53
SMC4-201ENST00000344722 A0A1W2PNN7 141 aa11.76□□□□□ -0.53
SMC4-201ENST00000344722 FAM229BQ4G0N7 80 aa11.74□□□□□ -0.53
SMC4-201ENST00000344722 TLN2Q9Y4G6 2542 aa11.74□□□□□ -0.53
SMC4-201ENST00000344722 USP9YO00507 2555 aaPredicted RBP11.73□□□□□ -0.53
SMC4-201ENST00000344722 SSBP3-AS1Q7Z2R9 100 aa11.73□□□□□ -0.53
SMC4-201ENST00000344722 RBM12B-AS1Q9P1G2 102 aa11.72□□□□□ -0.53
SMC4-201ENST00000344722 Q75L30 129 aa11.71□□□□□ -0.53
SMC4-201ENST00000344722 DSCR10P59022 87 aa11.7□□□□□ -0.54
SMC4-201ENST00000344722 RTL8CO15255 209 aa11.69□□□□□ -0.54
SMC4-201ENST00000344722 NBDYA0A0U1RRE5 68 aa11.69□□□□□ -0.54
SMC4-201ENST00000344722 SPRR4Q96PI1 79 aa11.69□□□□□ -0.54
SMC4-201ENST00000344722 SETD2Q9BYW2 2564 aaPredicted RBP11.69□□□□□ -0.54
SMC4-201ENST00000344722 PKD1L2Q7Z442 2459 aa11.68□□□□□ -0.54
SMC4-201ENST00000344722 OXTP01178 125 aa11.68□□□□□ -0.54
SMC4-201ENST00000344722 BPTFQ12830 3046 aa11.68□□□□□ -0.54
SMC4-201ENST00000344722 Q96NJ1 140 aa11.67□□□□□ -0.54
SMC4-201ENST00000344722 IGLV5-37A0A075B6J1 123 aa11.66□□□□□ -0.54
SMC4-201ENST00000344722 IGLV7-46A0A075B6I9 117 aa11.64□□□□□ -0.55
SMC4-201ENST00000344722 ANKRD11Q6UB99 2663 aaPredicted RBP11.63□□□□□ -0.55
SMC4-201ENST00000344722 CEP295Q9C0D2 2601 aa11.62□□□□□ -0.55
SMC4-201ENST00000344722 Q8N9P0 234 aaPredicted RBP11.6□□□□□ -0.55
SMC4-201ENST00000344722 TYMSOSQ8TAI1 123 aa11.6□□□□□ -0.55
SMC4-201ENST00000344722 LRRK2Q5S007 2527 aa11.59□□□□□ -0.55
SMC4-201ENST00000344722 ZNF462Q96JM2 2506 aa11.57□□□□□ -0.56
SMC4-201ENST00000344722 LINC01558Q9Y6Z2 57 aa11.56□□□□□ -0.56
SMC4-201ENST00000344722 ZNF861PO60384 105 aa11.55□□□□□ -0.56
SMC4-201ENST00000344722 PIEZO1Q92508 2521 aa11.54□□□□□ -0.56
SMC4-201ENST00000344722 Q5VV11 94 aa11.54□□□□□ -0.56
SMC4-201ENST00000344722 GOLGB1Q14789 3259 aaKnown RBP11.53□□□□□ -0.56
SMC4-201ENST00000344722 PRR26Q8N8Z3 221 aa11.53□□□□□ -0.56
SMC4-201ENST00000344722 CRIPTQ9P021 101 aa11.53□□□□□ -0.56
SMC4-201ENST00000344722 JMJD1CQ15652 2540 aa11.52□□□□□ -0.57
SMC4-201ENST00000344722 DOPEY1Q5JWR5 2465 aa11.5□□□□□ -0.57
SMC4-201ENST00000344722 C9orf163Q8N9P6 203 aa11.5□□□□□ -0.57
SMC4-201ENST00000344722 CNBPP62633 177 aaKnown RBP11.49□□□□□ -0.57
SMC4-201ENST00000344722 LINC01554Q52M75 96 aa11.48□□□□□ -0.57
SMC4-201ENST00000344722 Q8NDZ9 215 aa11.48□□□□□ -0.57
SMC4-201ENST00000344722 ANKRD17O75179 2603 aaKnown RBP11.47□□□□□ -0.57
SMC4-201ENST00000344722 DNAH12Q6ZR08 3092 aa11.47□□□□□ -0.57
SMC4-201ENST00000344722 CASC10Q5T4H9 136 aa11.45□□□□□ -0.58
SMC4-201ENST00000344722 KRTAP10-3P60369 221 aa11.44□□□□□ -0.58
SMC4-201ENST00000344722 KRTAP24-1Q3LI83 254 aa11.43□□□□□ -0.58
SMC4-201ENST00000344722 KRTAP10-11P60412 298 aa11.43□□□□□ -0.58
SMC4-201ENST00000344722 APLNQ9ULZ1 77 aa11.41□□□□□ -0.58
SMC4-201ENST00000344722 MTORP42345 2549 aa11.4□□□□□ -0.59
SMC4-201ENST00000344722 PLA2G1BP04054 148 aaKnown RBP11.39□□□□□ -0.59
SMC4-201ENST00000344722 ZFYVE26Q68DK2 2539 aa11.39□□□□□ -0.59
SMC4-201ENST00000344722 MMP24-AS1A0A0U1RRL7 71 aa11.39□□□□□ -0.59
SMC4-201ENST00000344722 ANAPC11Q9NYG5 84 aa11.38□□□□□ -0.59
SMC4-201ENST00000344722 SPRR1AP35321 89 aa11.36□□□□□ -0.59
SMC4-201ENST00000344722 POLQO75417 2590 aa11.35□□□□□ -0.59
SMC4-201ENST00000344722 H3BS24 57 aa11.35□□□□□ -0.59
SMC4-201ENST00000344722 PSORS1C2Q9UIG4 136 aa11.35□□□□□ -0.59
SMC4-201ENST00000344722 PRAC1Q96KF2 57 aa11.34□□□□□ -0.59
SMC4-201ENST00000344722 IGLV7-43P04211 117 aa11.34□□□□□ -0.59
SMC4-201ENST00000344722 HRES1P13985 223 aa11.34□□□□□ -0.59
SMC4-201ENST00000344722 CR1P17927 2039 aa11.32□□□□□ -0.6
SMC4-201ENST00000344722 A0A087WTM6 91 aa11.31□□□□□ -0.6
SMC4-201ENST00000344722 Q8N1X5 172 aa11.3□□□□□ -0.6
SMC4-201ENST00000344722 SPINK7P58062 85 aa11.3□□□□□ -0.6
SMC4-201ENST00000344722 CHD8Q9HCK8 2581 aa11.29□□□□□ -0.6
SMC4-201ENST00000344722 PRRC2CQ9Y520 2896 aaKnown RBP11.29□□□□□ -0.6
SMC4-201ENST00000344722 LINC00304Q8N9R0 145 aa11.28□□□□□ -0.6
SMC4-201ENST00000344722 LINC00472Q9H8W2 130 aa11.25□□□□□ -0.61
SMC4-201ENST00000344722 K7EIL1 84 aa11.25□□□□□ -0.61
SMC4-201ENST00000344722 SPTBN4Q9H254 2564 aa11.22□□□□□ -0.61
SMC4-201ENST00000344722 A0A1B0GU33 70 aa11.21□□□□□ -0.61
SMC4-201ENST00000344722 C9orf92A6NGG3 77 aa11.2□□□□□ -0.62
SMC4-201ENST00000344722 SPRR1BP22528 89 aa11.2□□□□□ -0.62
SMC4-201ENST00000344722 KRTAP1-3Q8IUG1 177 aa11.19□□□□□ -0.62
SMC4-201ENST00000344722 ACANP16112 2415 aa11.18□□□□□ -0.62
SMC4-201ENST00000344722 F8P00451 2351 aa11.18□□□□□ -0.62
SMC4-201ENST00000344722 CSAG1Q6PB30 78 aa11.18□□□□□ -0.62
SMC4-201ENST00000344722 A0A0D9SG42 100 aa11.17□□□□□ -0.62
SMC4-201ENST00000344722 TNP2Q05952 138 aa11.16□□□□□ -0.62
SMC4-201ENST00000344722 ZCCHC13Q8WW36 166 aaKnown RBP11.16□□□□□ -0.62
SMC4-201ENST00000344722 CEP350Q5VT06 3117 aa11.15□□□□□ -0.62
SMC4-201ENST00000344722 ASB16-AS1Q495Z4 193 aa11.13□□□□□ -0.63
SMC4-201ENST00000344722 KRTAP1-1Q07627 177 aa11.11□□□□□ -0.63
SMC4-201ENST00000344722 Q5W150 140 aa11.08□□□□□ -0.64
SMC4-201ENST00000344722 A0A0C4DFX4 3053 aa11.08□□□□□ -0.64
SMC4-201ENST00000344722 KRTAP26-1Q6PEX3 210 aa11.06□□□□□ -0.64
SMC4-201ENST00000344722 KRTAP29-1A8MX34 341 aaPredicted RBP11.04□□□□□ -0.64
SMC4-201ENST00000344722 Q6ZR54 194 aa11.02□□□□□ -0.65
SMC4-201ENST00000344722 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP11.02□□□□□ -0.65
SMC4-201ENST00000344722 DMAC1Q96GE9 116 aa11.01□□□□□ -0.65
SMC4-201ENST00000344722 LUZP6Q538Z0 58 aa10.99□□□□□ -0.65
SMC4-201ENST00000344722 LCE6AA0A183 80 aa10.99□□□□□ -0.65
SMC4-201ENST00000344722 KRTAP4-16G5E9R7 235 aaPredicted RBP10.98□□□□□ -0.65
SMC4-201ENST00000344722 A6NN06 94 aa10.98□□□□□ -0.65
SMC4-201ENST00000344722 WWC2-AS2Q96NR7 200 aa10.97□□□□□ -0.65
SMC4-201ENST00000344722 CHD7Q9P2D1 2997 aa10.96□□□□□ -0.65
SMC4-201ENST00000344722 C5orf42Q9H799 3197 aa10.91□□□□□ -0.66
SMC4-201ENST00000344722 PLAC8Q9NZF1 115 aa10.91□□□□□ -0.66
SMC4-201ENST00000344722 PCNTO95613 3336 aa10.9□□□□□ -0.66
SMC4-201ENST00000344722 EPG5Q9HCE0 2579 aa10.89□□□□□ -0.67
SMC4-201ENST00000344722 SPATA8Q6RVD6 105 aa10.86□□□□□ -0.67
SMC4-201ENST00000344722 UTRNP46939 3433 aa10.85□□□□□ -0.67
SMC4-201ENST00000344722 LINC00483Q53H64 154 aa10.83□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms