RNA–Protein interactions for RNA: ENST00000339997.8

RTN3-202, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,886 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-202ENST00000339997 SBSPONQ8IVN8 264 aa6.1□□□□□ -1.43
RTN3-202ENST00000339997 STAB1Q9NY15 2570 aa6.09□□□□□ -1.43
RTN3-202ENST00000339997 FHL3Q13643 280 aa6.09□□□□□ -1.43
RTN3-202ENST00000339997 Q6ZRU5 148 aa6.09□□□□□ -1.43
RTN3-202ENST00000339997 TEP1Q99973 2627 aaKnown RBP6.09□□□□□ -1.43
RTN3-202ENST00000339997 CMYA5Q8N3K9 4069 aa6.08□□□□□ -1.44
RTN3-202ENST00000339997 SPAG11AQ6PDA7 123 aa6.08□□□□□ -1.44
RTN3-202ENST00000339997 EGFEM1PQ0D2K5 195 aa6.08□□□□□ -1.44
RTN3-202ENST00000339997 SMIM29Q86T20 159 aa6.08□□□□□ -1.44
RTN3-202ENST00000339997 LIMD2Q9BT23 127 aa6.08□□□□□ -1.44
RTN3-202ENST00000339997 IGKV2D-30A0A075B6S6 120 aa6.07□□□□□ -1.44
RTN3-202ENST00000339997 IGHV3OR16-9A0A0B4J2B5 98 aa6.07□□□□□ -1.44
RTN3-202ENST00000339997 IGLV1-51P01701 117 aa6.07□□□□□ -1.44
RTN3-202ENST00000339997 IGKV2-30P06310 120 aa6.07□□□□□ -1.44
RTN3-202ENST00000339997 NHLRC4P0CG21 123 aaPredicted RBP6.07□□□□□ -1.44
RTN3-202ENST00000339997 SPATA3Q8NHX4 192 aa6.06□□□□□ -1.44
RTN3-202ENST00000339997 C2orf48Q96LS8 159 aa6.06□□□□□ -1.44
RTN3-202ENST00000339997 ZNF292O60281 2723 aa6.06□□□□□ -1.44
RTN3-202ENST00000339997 FLNAP21333 2647 aaKnown RBP6.06□□□□□ -1.44
RTN3-202ENST00000339997 H0Y9P7 68 aa6.05□□□□□ -1.44
RTN3-202ENST00000339997 TM2D3Q9BRN9 247 aa6.05□□□□□ -1.44
RTN3-202ENST00000339997 Q9BRP9 147 aa6.05□□□□□ -1.44
RTN3-202ENST00000339997 CFAP46Q8IYW2 2715 aa6.05□□□□□ -1.44
RTN3-202ENST00000339997 KIAA0087Q14695 138 aa6.05□□□□□ -1.44
RTN3-202ENST00000339997 C11orf72Q8NBR9 251 aa6.05□□□□□ -1.44
RTN3-202ENST00000339997 IGLV5-52A0A0A0MRZ9 124 aa6.04□□□□□ -1.44
RTN3-202ENST00000339997 IGLV5-39A0A0G2JS06 123 aa6.04□□□□□ -1.44
RTN3-202ENST00000339997 A0A1B0GU69 56 aa6.04□□□□□ -1.44
RTN3-202ENST00000339997 REG3GQ6UW15 175 aa6.04□□□□□ -1.44
RTN3-202ENST00000339997 COL6A5A8TX70 2615 aa6.04□□□□□ -1.44
RTN3-202ENST00000339997 NBEAL1Q6ZS30 2694 aa6.04□□□□□ -1.44
RTN3-202ENST00000339997 SMCR5Q8TEV8 140 aa6.04□□□□□ -1.44
RTN3-202ENST00000339997 TEX15Q9BXT5 2789 aa6.03□□□□□ -1.44
RTN3-202ENST00000339997 LYPD5Q6UWN5 251 aa6.03□□□□□ -1.44
RTN3-202ENST00000339997 UTP20O75691 2785 aaKnown RBP6.03□□□□□ -1.44
RTN3-202ENST00000339997 LINC01556Q5JQF7 62 aa6.02□□□□□ -1.45
RTN3-202ENST00000339997 HCG22E2RYF7 251 aa6.02□□□□□ -1.45
RTN3-202ENST00000339997 PRO0628Q9UI54 55 aa6.02□□□□□ -1.45
RTN3-202ENST00000339997 ATP11AUNQ6ZP68 121 aa6.01□□□□□ -1.45
RTN3-202ENST00000339997 IGLV8-61A0A075B6I0 122 aa6.01□□□□□ -1.45
RTN3-202ENST00000339997 NBEAL2Q6ZNJ1 2754 aa6.01□□□□□ -1.45
RTN3-202ENST00000339997 C1orf64Q8NEQ6 169 aa6.01□□□□□ -1.45
RTN3-202ENST00000339997 COX6B2Q6YFQ2 88 aa6□□□□□ -1.45
RTN3-202ENST00000339997 A0A1B0GUV1 79 aa6□□□□□ -1.45
RTN3-202ENST00000339997 NIPBLQ6KC79 2804 aaeCLIP6□□□□□ -1.45
RTN3-202ENST00000339997 UNC79Q9P2D8 2635 aa5.99□□□□□ -1.45
RTN3-202ENST00000339997 RPL37AP61513 92 aaKnown RBP5.99□□□□□ -1.45
RTN3-202ENST00000339997 C7orf65Q6ZTY9 151 aa5.99□□□□□ -1.45
RTN3-202ENST00000339997 FAM19A4Q96LR4 140 aa5.99□□□□□ -1.45
RTN3-202ENST00000339997 C22orf24Q9Y442 160 aa5.99□□□□□ -1.45
RTN3-202ENST00000339997 GCN1Q92616 2671 aaKnown RBP5.99□□□□□ -1.45
RTN3-202ENST00000339997 C6orf48Q9UBA6 75 aa5.99□□□□□ -1.45
RTN3-202ENST00000339997 ST20-AS1Q8NBB2 130 aa5.99□□□□□ -1.45
RTN3-202ENST00000339997 C1orf134Q5TEV5 83 aa5.98□□□□□ -1.45
RTN3-202ENST00000339997 CRIPTQ9P021 101 aa5.98□□□□□ -1.45
RTN3-202ENST00000339997 LINC01546A6NGU7 62 aa5.98□□□□□ -1.45
RTN3-202ENST00000339997 F8WDY8 70 aa5.98□□□□□ -1.45
RTN3-202ENST00000339997 LITAFQ99732 161 aa5.97□□□□□ -1.45
RTN3-202ENST00000339997 C8orf87E5RJ46 101 aa5.97□□□□□ -1.45
RTN3-202ENST00000339997 SSBP3-AS1Q7Z2R9 100 aa5.97□□□□□ -1.45
RTN3-202ENST00000339997 A0A0G2JQZ4 141 aa5.97□□□□□ -1.45
RTN3-202ENST00000339997 A0A1W2PNN7 141 aa5.97□□□□□ -1.45
RTN3-202ENST00000339997 CXCL6P80162 114 aa5.97□□□□□ -1.45
RTN3-202ENST00000339997 MDFIQ99750 246 aa5.96□□□□□ -1.45
RTN3-202ENST00000339997 LINC00167Q96N53 147 aa5.96□□□□□ -1.46
RTN3-202ENST00000339997 FAM229AH3BQW9 127 aa5.96□□□□□ -1.46
RTN3-202ENST00000339997 LINC01561Q8N1V8 128 aa5.96□□□□□ -1.46
RTN3-202ENST00000339997 SPACA4Q8TDM5 124 aa5.96□□□□□ -1.46
RTN3-202ENST00000339997 Q6ZQT0 140 aa5.95□□□□□ -1.46
RTN3-202ENST00000339997 FBN2P35556 2912 aa5.94□□□□□ -1.46
RTN3-202ENST00000339997 LUZP6Q538Z0 58 aa5.94□□□□□ -1.46
RTN3-202ENST00000339997 C9orf129Q5T035 196 aaKnown RBP5.94□□□□□ -1.46
RTN3-202ENST00000339997 J3QL48 77 aa5.94□□□□□ -1.46
RTN3-202ENST00000339997 IGLV5-45A0A087WSX0 123 aa5.93□□□□□ -1.46
RTN3-202ENST00000339997 UBR5O95071 2799 aaPredicted RBP5.93□□□□□ -1.46
RTN3-202ENST00000339997 A8MUN3 132 aa5.93□□□□□ -1.46
RTN3-202ENST00000339997 HELZ2Q9BYK8 2649 aaKnown RBP5.92□□□□□ -1.46
RTN3-202ENST00000339997 STAB2Q8WWQ8 2551 aa5.92□□□□□ -1.46
RTN3-202ENST00000339997 LINC01554Q52M75 96 aa5.92□□□□□ -1.46
RTN3-202ENST00000339997 LINC00336Q6ZUF6 198 aa5.92□□□□□ -1.46
RTN3-202ENST00000339997 TP53AIP1Q9HCN2 124 aa5.92□□□□□ -1.46
RTN3-202ENST00000339997 CHTF8P0CG12 524 aa5.91□□□□□ -1.46
RTN3-202ENST00000339997 FAM168BA1KXE4 195 aa5.91□□□□□ -1.46
RTN3-202ENST00000339997 RPS28P62857 69 aaKnown RBP5.9□□□□□ -1.46
RTN3-202ENST00000339997 MOBPQ13875 183 aa5.9□□□□□ -1.46
RTN3-202ENST00000339997 LINC00476Q8WZB0 136 aa5.9□□□□□ -1.47
RTN3-202ENST00000339997 PHF5AQ7RTV0 110 aaKnown RBP5.89□□□□□ -1.47
RTN3-202ENST00000339997 NSD1Q96L73 2696 aaPredicted RBP5.89□□□□□ -1.47
RTN3-202ENST00000339997 TRBV7-4A0A0J9YYF1 115 aa5.89□□□□□ -1.47
RTN3-202ENST00000339997 K7EQZ3 153 aa5.88□□□□□ -1.47
RTN3-202ENST00000339997 DNAH1Q9P2D7 4330 aa5.88□□□□□ -1.47
RTN3-202ENST00000339997 Q6ZRP5 223 aa5.88□□□□□ -1.47
RTN3-202ENST00000339997 ELOF1P60002 83 aaKnown RBP5.87□□□□□ -1.47
RTN3-202ENST00000339997 Q8NBF4 154 aa5.87□□□□□ -1.47
RTN3-202ENST00000339997 LINC01600Q96MT4 127 aa5.86□□□□□ -1.47
RTN3-202ENST00000339997 APLNQ9ULZ1 77 aa5.86□□□□□ -1.47
RTN3-202ENST00000339997 CSNK1G2-AS1Q8NCQ2 148 aa5.85□□□□□ -1.47
RTN3-202ENST00000339997 Q6ZRX8 168 aa5.84□□□□□ -1.47
RTN3-202ENST00000339997 MXRA5Q9NR99 2828 aa5.84□□□□□ -1.47
RTN3-202ENST00000339997 CR1P17927 2039 aa5.83□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 82.5 ms