RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 Q96NJ1 140 aa6.48□□□□□ -1.37
USP54-201ENST00000339859 PLAC8Q9NZF1 115 aa6.48□□□□□ -1.37
USP54-201ENST00000339859 UQCRQO14949 82 aa6.48□□□□□ -1.37
USP54-201ENST00000339859 Q6ZQT0 140 aa6.48□□□□□ -1.37
USP54-201ENST00000339859 TP53AIP1Q9HCN2 124 aa6.48□□□□□ -1.37
USP54-201ENST00000339859 hDV103S1A0JD37 113 aa6.48□□□□□ -1.37
USP54-201ENST00000339859 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP6.48□□□□□ -1.37
USP54-201ENST00000339859 SERP2Q8N6R1 65 aa6.47□□□□□ -1.37
USP54-201ENST00000339859 PRR15LQ9BU68 103 aa6.47□□□□□ -1.37
USP54-201ENST00000339859 Q6Q795 121 aa6.47□□□□□ -1.37
USP54-201ENST00000339859 ATP5EP56381 51 aaPredicted RBP6.46□□□□□ -1.37
USP54-201ENST00000339859 H0Y9P7 68 aa6.46□□□□□ -1.37
USP54-201ENST00000339859 CDIP1Q9H305 208 aa6.46□□□□□ -1.38
USP54-201ENST00000339859 PRRC2CQ9Y520 2896 aaKnown RBP6.46□□□□□ -1.38
USP54-201ENST00000339859 XIRP2A4UGR9 3374 aa6.46□□□□□ -1.38
USP54-201ENST00000339859 C5orf47Q569G3 176 aa6.45□□□□□ -1.38
USP54-201ENST00000339859 LINC00846Q9NV44 126 aa6.45□□□□□ -1.38
USP54-201ENST00000339859 LINC00208Q96KT6 92 aa6.45□□□□□ -1.38
USP54-201ENST00000339859 TRBV7-7A0A0K0K1E9 115 aa6.45□□□□□ -1.38
USP54-201ENST00000339859 UNC80Q8N2C7 3258 aa6.45□□□□□ -1.38
USP54-201ENST00000339859 TRAV7A0A075B6U4 112 aa6.45□□□□□ -1.38
USP54-201ENST00000339859 SERP1Q9Y6X1 66 aa6.45□□□□□ -1.38
USP54-201ENST00000339859 SPINK1P00995 79 aa6.45□□□□□ -1.38
USP54-201ENST00000339859 IGKV2D-30A0A075B6S6 120 aa6.44□□□□□ -1.38
USP54-201ENST00000339859 IGKV2-30P06310 120 aa6.44□□□□□ -1.38
USP54-201ENST00000339859 IGFL1Q6UW32 110 aa6.44□□□□□ -1.38
USP54-201ENST00000339859 KRTAP1-5Q9BYS1 174 aa6.42□□□□□ -1.38
USP54-201ENST00000339859 SNURFQ9Y675 71 aa6.42□□□□□ -1.38
USP54-201ENST00000339859 UNC79Q9P2D8 2635 aa6.41□□□□□ -1.38
USP54-201ENST00000339859 A8MWP4 228 aa6.41□□□□□ -1.38
USP54-201ENST00000339859 Q6ZR54 194 aa6.41□□□□□ -1.38
USP54-201ENST00000339859 FAM229BQ4G0N7 80 aa6.41□□□□□ -1.38
USP54-201ENST00000339859 Q5VSD8 79 aa6.41□□□□□ -1.38
USP54-201ENST00000339859 ANAPC11Q9NYG5 84 aa6.41□□□□□ -1.38
USP54-201ENST00000339859 Q8N377 158 aa6.41□□□□□ -1.38
USP54-201ENST00000339859 COL6A3P12111 3177 aa6.4□□□□□ -1.39
USP54-201ENST00000339859 CD164Q04900 197 aa6.38□□□□□ -1.39
USP54-201ENST00000339859 SMIM29Q86T20 159 aa6.38□□□□□ -1.39
USP54-201ENST00000339859 A0A087WVE0 104 aa6.38□□□□□ -1.39
USP54-201ENST00000339859 PCOTHQ58A44 107 aa6.38□□□□□ -1.39
USP54-201ENST00000339859 FAM104AQ969W3 186 aa6.38□□□□□ -1.39
USP54-201ENST00000339859 DSPP15924 2871 aaKnown RBP6.38□□□□□ -1.39
USP54-201ENST00000339859 K7ERS5 55 aa6.38□□□□□ -1.39
USP54-201ENST00000339859 COX6B2Q6YFQ2 88 aa6.38□□□□□ -1.39
USP54-201ENST00000339859 C7orf65Q6ZTY9 151 aa6.38□□□□□ -1.39
USP54-201ENST00000339859 COX7CP15954 63 aa6.38□□□□□ -1.39
USP54-201ENST00000339859 EIF4EBP3O60516 100 aaPredicted RBP6.37□□□□□ -1.39
USP54-201ENST00000339859 C9orf92A6NGG3 77 aa6.37□□□□□ -1.39
USP54-201ENST00000339859 C1orf64Q8NEQ6 169 aa6.37□□□□□ -1.39
USP54-201ENST00000339859 KRTAP10-1P60331 282 aa6.37□□□□□ -1.39
USP54-201ENST00000339859 ERC2-IT1O76042 136 aa6.36□□□□□ -1.39
USP54-201ENST00000339859 KRTAP10-2P60368 255 aa6.36□□□□□ -1.39
USP54-201ENST00000339859 V9GYY9 64 aa6.36□□□□□ -1.39
USP54-201ENST00000339859 MRPL34Q9BQ48 92 aaKnown RBP6.35□□□□□ -1.39
USP54-201ENST00000339859 DSCR10P59022 87 aa6.35□□□□□ -1.39
USP54-201ENST00000339859 PRR26Q8N8Z3 221 aa6.35□□□□□ -1.39
USP54-201ENST00000339859 ATRQ13535 2644 aa6.35□□□□□ -1.39
USP54-201ENST00000339859 LAMA2P24043 3122 aaKnown RBP6.35□□□□□ -1.39
USP54-201ENST00000339859 KRTAP26-1Q6PEX3 210 aa6.35□□□□□ -1.39
USP54-201ENST00000339859 OBSCN-AS1Q96MR7 158 aa6.34□□□□□ -1.39
USP54-201ENST00000339859 WDFY4Q6ZS81 3184 aa6.34□□□□□ -1.39
USP54-201ENST00000339859 TRIOO75962 3097 aa6.33□□□□□ -1.4
USP54-201ENST00000339859 A0A1B0GVX0 72 aa6.33□□□□□ -1.4
USP54-201ENST00000339859 SMCPP49901 116 aaPredicted RBP6.33□□□□□ -1.4
USP54-201ENST00000339859 H3BPC8 53 aa6.33□□□□□ -1.4
USP54-201ENST00000339859 MAST4O15021 2626 aa6.32□□□□□ -1.4
USP54-201ENST00000339859 TMEM254Q8TBM7 123 aa6.32□□□□□ -1.4
USP54-201ENST00000339859 IGLV7-46A0A075B6I9 117 aa6.31□□□□□ -1.4
USP54-201ENST00000339859 PRO0461Q9UI25 63 aa6.31□□□□□ -1.4
USP54-201ENST00000339859 C8orf17Q9NRJ1 99 aa6.31□□□□□ -1.4
USP54-201ENST00000339859 TRAV22A0A0B4J277 110 aa6.29□□□□□ -1.4
USP54-201ENST00000339859 LOC101927531A0A1B0GV80 90 aa6.29□□□□□ -1.4
USP54-201ENST00000339859 PRR15Q8IV56 129 aa6.28□□□□□ -1.4
USP54-201ENST00000339859 IGLV5-48A0A075B6I7 105 aa6.28□□□□□ -1.4
USP54-201ENST00000339859 K7EQZ3 153 aa6.28□□□□□ -1.4
USP54-201ENST00000339859 RBM12B-AS1Q9P1G2 102 aa6.28□□□□□ -1.4
USP54-201ENST00000339859 KMT2BQ9UMN6 2715 aaPredicted RBP6.28□□□□□ -1.4
USP54-201ENST00000339859 ACYP2P14621 99 aa6.27□□□□□ -1.41
USP54-201ENST00000339859 MGAM2Q2M2H8 2515 aa6.26□□□□□ -1.41
USP54-201ENST00000339859 REV3LO60673 3130 aa6.26□□□□□ -1.41
USP54-201ENST00000339859 A0A0G2JQZ4 141 aa6.26□□□□□ -1.41
USP54-201ENST00000339859 CHD6Q8TD26 2715 aa6.26□□□□□ -1.41
USP54-201ENST00000339859 SPRR1AP35321 89 aa6.26□□□□□ -1.41
USP54-201ENST00000339859 CFAP54Q96N23 3096 aa6.25□□□□□ -1.41
USP54-201ENST00000339859 MPLKIPQ8TAP9 179 aa6.24□□□□□ -1.41
USP54-201ENST00000339859 EYSQ5T1H1 3165 aa6.24□□□□□ -1.41
USP54-201ENST00000339859 Q6ZRN7 208 aaPredicted RBP6.23□□□□□ -1.41
USP54-201ENST00000339859 OXTP01178 125 aa6.22□□□□□ -1.41
USP54-201ENST00000339859 Q6ZSA8 131 aa6.22□□□□□ -1.41
USP54-201ENST00000339859 A0A1W2PNM2 257 aa6.21□□□□□ -1.41
USP54-201ENST00000339859 GCN1Q92616 2671 aaKnown RBP6.21□□□□□ -1.42
USP54-201ENST00000339859 CCDC179H3BU77 68 aa6.21□□□□□ -1.42
USP54-201ENST00000339859 UBR5O95071 2799 aaPredicted RBP6.21□□□□□ -1.42
USP54-201ENST00000339859 LAMA1P25391 3075 aa6.21□□□□□ -1.42
USP54-201ENST00000339859 CENPEQ02224 2701 aa6.2□□□□□ -1.42
USP54-201ENST00000339859 TEP1Q99973 2627 aaKnown RBP6.19□□□□□ -1.42
USP54-201ENST00000339859 SPRR1BP22528 89 aa6.19□□□□□ -1.42
USP54-201ENST00000339859 DNAH14Q0VDD8 3507 aa6.18□□□□□ -1.42
USP54-201ENST00000339859 A0A0C4DFX4 3053 aa6.17□□□□□ -1.42
USP54-201ENST00000339859 FRYQ5TBA9 3013 aa6.16□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 68.5 ms