RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 K7EIL1 84 aa8.36□□□□□ -1.07
SDC3-201ENST00000336798 C15orf56Q8N910 161 aa8.35□□□□□ -1.07
SDC3-201ENST00000336798 TLN2Q9Y4G6 2542 aa8.34□□□□□ -1.07
SDC3-201ENST00000336798 C8orf17Q9NRJ1 99 aa8.34□□□□□ -1.07
SDC3-201ENST00000336798 ZNF462Q96JM2 2506 aa8.33□□□□□ -1.08
SDC3-201ENST00000336798 LITAFQ99732 161 aa8.33□□□□□ -1.08
SDC3-201ENST00000336798 CDC42SE1Q9NRR8 79 aa8.31□□□□□ -1.08
SDC3-201ENST00000336798 ZNF861PO60384 105 aa8.29□□□□□ -1.08
SDC3-201ENST00000336798 Q8N1X5 172 aa8.29□□□□□ -1.08
SDC3-201ENST00000336798 KCNQ1DNQ9H478 68 aa8.29□□□□□ -1.08
SDC3-201ENST00000336798 EIF4EBP3O60516 100 aaPredicted RBP8.28□□□□□ -1.08
SDC3-201ENST00000336798 A0A1B0GVX0 72 aa8.28□□□□□ -1.08
SDC3-201ENST00000336798 A0A087WTM6 91 aa8.28□□□□□ -1.08
SDC3-201ENST00000336798 CSNK1G2-AS1Q8NCQ2 148 aa8.27□□□□□ -1.09
SDC3-201ENST00000336798 KRTAP10-3P60369 221 aa8.27□□□□□ -1.09
SDC3-201ENST00000336798 SETD2Q9BYW2 2564 aaPredicted RBP8.26□□□□□ -1.09
SDC3-201ENST00000336798 LINC00528Q8N1L1 170 aa8.26□□□□□ -1.09
SDC3-201ENST00000336798 ZNF575Q86XF7 245 aa8.26□□□□□ -1.09
SDC3-201ENST00000336798 Q8N377 158 aa8.26□□□□□ -1.09
SDC3-201ENST00000336798 CASC10Q5T4H9 136 aa8.25□□□□□ -1.09
SDC3-201ENST00000336798 IGLV5-48A0A075B6I7 105 aa8.24□□□□□ -1.09
SDC3-201ENST00000336798 Q1T7F1 81 aa8.24□□□□□ -1.09
SDC3-201ENST00000336798 CEP295Q9C0D2 2601 aa8.22□□□□□ -1.09
SDC3-201ENST00000336798 USP9XQ93008 2570 aaPredicted RBP8.22□□□□□ -1.09
SDC3-201ENST00000336798 PSORS1C2Q9UIG4 136 aa8.22□□□□□ -1.09
SDC3-201ENST00000336798 FAM229BQ4G0N7 80 aa8.22□□□□□ -1.09
SDC3-201ENST00000336798 IGLV7-43P04211 117 aa8.21□□□□□ -1.09
SDC3-201ENST00000336798 PRAC1Q96KF2 57 aa8.21□□□□□ -1.1
SDC3-201ENST00000336798 F8P00451 2351 aa8.2□□□□□ -1.1
SDC3-201ENST00000336798 FASNP49327 2511 aaKnown RBP8.19□□□□□ -1.1
SDC3-201ENST00000336798 CENPFP49454 3210 aa8.18□□□□□ -1.1
SDC3-201ENST00000336798 C19orf73Q9NVV2 129 aa8.18□□□□□ -1.1
SDC3-201ENST00000336798 PKD1L2Q7Z442 2459 aa8.17□□□□□ -1.1
SDC3-201ENST00000336798 CYSTM1Q9H1C7 97 aa8.16□□□□□ -1.1
SDC3-201ENST00000336798 FP248Q71RG6 208 aaPredicted RBP8.16□□□□□ -1.1
SDC3-201ENST00000336798 ANKRD11Q6UB99 2663 aaPredicted RBP8.16□□□□□ -1.1
SDC3-201ENST00000336798 PRR34Q9NV39 138 aa8.15□□□□□ -1.1
SDC3-201ENST00000336798 M0R2T5 61 aa8.15□□□□□ -1.11
SDC3-201ENST00000336798 C9orf163Q8N9P6 203 aa8.15□□□□□ -1.11
SDC3-201ENST00000336798 USP9YO00507 2555 aaPredicted RBP8.15□□□□□ -1.11
SDC3-201ENST00000336798 GIG44P09565 113 aaPredicted RBP8.14□□□□□ -1.11
SDC3-201ENST00000336798 PCSK5Q92824 1860 aa8.14□□□□□ -1.11
SDC3-201ENST00000336798 FAM104AQ969W3 186 aa8.14□□□□□ -1.11
SDC3-201ENST00000336798 EP400Q96L91 3159 aa8.14□□□□□ -1.11
SDC3-201ENST00000336798 SPTBN4Q9H254 2564 aa8.13□□□□□ -1.11
SDC3-201ENST00000336798 SPRR4Q96PI1 79 aa8.13□□□□□ -1.11
SDC3-201ENST00000336798 LUZP6Q538Z0 58 aa8.12□□□□□ -1.11
SDC3-201ENST00000336798 ANKRD17O75179 2603 aaKnown RBP8.1□□□□□ -1.11
SDC3-201ENST00000336798 Q6ZSA8 131 aa8.1□□□□□ -1.11
SDC3-201ENST00000336798 OXTP01178 125 aa8.08□□□□□ -1.12
SDC3-201ENST00000336798 POLQO75417 2590 aa8.08□□□□□ -1.12
SDC3-201ENST00000336798 Q75L30 129 aa8.08□□□□□ -1.12
SDC3-201ENST00000336798 LINC00612Q8N6U2 182 aa8.08□□□□□ -1.12
SDC3-201ENST00000336798 A0A1W2PNM2 257 aa8.07□□□□□ -1.12
SDC3-201ENST00000336798 TLX1NBP0CAT3 122 aa8.07□□□□□ -1.12
SDC3-201ENST00000336798 CAMK2N1Q7Z7J9 78 aa8.07□□□□□ -1.12
SDC3-201ENST00000336798 PRR26Q8N8Z3 221 aa8.07□□□□□ -1.12
SDC3-201ENST00000336798 TNP2Q05952 138 aa8.06□□□□□ -1.12
SDC3-201ENST00000336798 ACANP16112 2415 aa8.06□□□□□ -1.12
SDC3-201ENST00000336798 MTORP42345 2549 aa8.06□□□□□ -1.12
SDC3-201ENST00000336798 PLA2G2DQ9UNK4 145 aa8.05□□□□□ -1.12
SDC3-201ENST00000336798 SPANXA2-OT1Q8N9U9 137 aa8.04□□□□□ -1.12
SDC3-201ENST00000336798 CSAG1Q6PB30 78 aa8.03□□□□□ -1.12
SDC3-201ENST00000336798 IGLV7-46A0A075B6I9 117 aa8.02□□□□□ -1.12
SDC3-201ENST00000336798 KLK9Q2XQG4 91 aa8.02□□□□□ -1.13
SDC3-201ENST00000336798 A0A096LNT2 108 aa8.01□□□□□ -1.13
SDC3-201ENST00000336798 CNBPP62633 177 aaKnown RBP7.99□□□□□ -1.13
SDC3-201ENST00000336798 Q5VV11 94 aa7.99□□□□□ -1.13
SDC3-201ENST00000336798 GOLGB1Q14789 3259 aaKnown RBP7.98□□□□□ -1.13
SDC3-201ENST00000336798 OCR1Q9BZK8 76 aa7.97□□□□□ -1.13
SDC3-201ENST00000336798 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP7.97□□□□□ -1.13
SDC3-201ENST00000336798 LINC00483Q53H64 154 aa7.97□□□□□ -1.13
SDC3-201ENST00000336798 Q8N9P0 234 aaPredicted RBP7.92□□□□□ -1.14
SDC3-201ENST00000336798 A0A1B0GU33 70 aa7.92□□□□□ -1.14
SDC3-201ENST00000336798 EPG5Q9HCE0 2579 aa7.91□□□□□ -1.14
SDC3-201ENST00000336798 FLNBO75369 2602 aaKnown RBP7.91□□□□□ -1.14
SDC3-201ENST00000336798 KRTAP1-3Q8IUG1 177 aa7.91□□□□□ -1.14
SDC3-201ENST00000336798 HRES1P13985 223 aa7.9□□□□□ -1.14
SDC3-201ENST00000336798 CR1P17927 2039 aa7.89□□□□□ -1.15
SDC3-201ENST00000336798 SPINK7P58062 85 aa7.88□□□□□ -1.15
SDC3-201ENST00000336798 A0A0A0MQY5 61 aa7.88□□□□□ -1.15
SDC3-201ENST00000336798 LINC01558Q9Y6Z2 57 aa7.87□□□□□ -1.15
SDC3-201ENST00000336798 S4R3F8 94 aa7.87□□□□□ -1.15
SDC3-201ENST00000336798 KRTAP1-1Q07627 177 aa7.86□□□□□ -1.15
SDC3-201ENST00000336798 DMAC1Q96GE9 116 aa7.8□□□□□ -1.16
SDC3-201ENST00000336798 KRTAP16-1A8MUX0 517 aa7.79□□□□□ -1.16
SDC3-201ENST00000336798 ZCCHC13Q8WW36 166 aaKnown RBP7.79□□□□□ -1.16
SDC3-201ENST00000336798 USP24Q9UPU5 2620 aa7.79□□□□□ -1.16
SDC3-201ENST00000336798 BPTFQ12830 3046 aa7.76□□□□□ -1.17
SDC3-201ENST00000336798 R4GN34 69 aa7.75□□□□□ -1.17
SDC3-201ENST00000336798 MMP24-AS1A0A0U1RRL7 71 aa7.73□□□□□ -1.17
SDC3-201ENST00000336798 Q5VSD8 79 aa7.72□□□□□ -1.17
SDC3-201ENST00000336798 MGAM2Q2M2H8 2515 aa7.71□□□□□ -1.17
SDC3-201ENST00000336798 HECTD1Q9ULT8 2610 aa7.71□□□□□ -1.18
SDC3-201ENST00000336798 Q5W150 140 aa7.7□□□□□ -1.18
SDC3-201ENST00000336798 Q8NDZ9 215 aa7.7□□□□□ -1.18
SDC3-201ENST00000336798 PLAC8Q9NZF1 115 aa7.7□□□□□ -1.18
SDC3-201ENST00000336798 A6NN06 94 aa7.66□□□□□ -1.18
SDC3-201ENST00000336798 ATRQ13535 2644 aa7.65□□□□□ -1.18
SDC3-201ENST00000336798 M0QZ58 72 aa7.63□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 74.1 ms