RNA–Protein interactions for RNA: ENST00000318787.13

HDDC2-201, Transcript of HD domain containing 2, humanhuman

TSL 1 (best)

Gene HDDC2, Length 1,350 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC2-201ENST00000318787 LINC00304Q8N9R0 145 aa9.41□□□□□ -0.9
HDDC2-201ENST00000318787 SMCR5Q8TEV8 140 aa9.41□□□□□ -0.9
HDDC2-201ENST00000318787 TTTY13Q9BZ97 58 aa9.41□□□□□ -0.9
HDDC2-201ENST00000318787 PPDPFQ9H3Y8 114 aa9.41□□□□□ -0.9
HDDC2-201ENST00000318787 ZNF706Q9Y5V0 76 aaPredicted RBP9.41□□□□□ -0.9
HDDC2-201ENST00000318787 TRBV10-2A0A0K0K1G8 114 aa9.4□□□□□ -0.9
HDDC2-201ENST00000318787 KRTAP9-6A0A140TA67 174 aa9.4□□□□□ -0.9
HDDC2-201ENST00000318787 C20orf202A1L168 122 aa9.4□□□□□ -0.9
HDDC2-201ENST00000318787 SPRR1AP35321 89 aa9.4□□□□□ -0.9
HDDC2-201ENST00000318787 COA6Q5JTJ3 125 aaKnown RBP9.4□□□□□ -0.9
HDDC2-201ENST00000318787 SPRR4Q96PI1 79 aa9.4□□□□□ -0.9
HDDC2-201ENST00000318787 ATOH7Q8N100 152 aa9.39□□□□□ -0.91
HDDC2-201ENST00000318787 NDUFC2O95298 119 aa9.38□□□□□ -0.91
HDDC2-201ENST00000318787 TRAV23DV6A0A075B6W5 121 aa9.37□□□□□ -0.91
HDDC2-201ENST00000318787 B5MCH6 92 aa9.37□□□□□ -0.91
HDDC2-201ENST00000318787 KRTAP4-16G5E9R7 235 aaPredicted RBP9.37□□□□□ -0.91
HDDC2-201ENST00000318787 OR13C6PQ8NH95 151 aa9.37□□□□□ -0.91
HDDC2-201ENST00000318787 RETNLBQ9BQ08 111 aa9.37□□□□□ -0.91
HDDC2-201ENST00000318787 SCGB1D4Q6XE38 83 aa9.37□□□□□ -0.91
HDDC2-201ENST00000318787 GAGE2AQ6NT46 116 aa9.36□□□□□ -0.91
HDDC2-201ENST00000318787 LINC00308Q8TCZ7 52 aa9.36□□□□□ -0.91
HDDC2-201ENST00000318787 IGLV6-57P01721 117 aa9.35□□□□□ -0.91
HDDC2-201ENST00000318787 LITAFQ99732 161 aa9.35□□□□□ -0.91
HDDC2-201ENST00000318787 TIMM17BO60830 172 aa9.34□□□□□ -0.91
HDDC2-201ENST00000318787 Q6ZRX8 168 aa9.34□□□□□ -0.91
HDDC2-201ENST00000318787 SPANXCQ9NY87 97 aa9.34□□□□□ -0.91
HDDC2-201ENST00000318787 ZNF73O43830 326 aaPredicted RBP9.33□□□□□ -0.92
HDDC2-201ENST00000318787 ERC2-IT1O76042 136 aa9.33□□□□□ -0.92
HDDC2-201ENST00000318787 S100A1P23297 94 aa9.33□□□□□ -0.92
HDDC2-201ENST00000318787 S100A2P29034 98 aa9.33□□□□□ -0.92
HDDC2-201ENST00000318787 ANKRD39Q53RE8 183 aa9.33□□□□□ -0.92
HDDC2-201ENST00000318787 Q9BRP9 147 aa9.32□□□□□ -0.92
HDDC2-201ENST00000318787 IGLV9-49A0A0B4J1Y8 123 aa9.31□□□□□ -0.92
HDDC2-201ENST00000318787 HINT1P49773 126 aaPredicted RBP9.31□□□□□ -0.92
HDDC2-201ENST00000318787 JOSD1Q15040 202 aaPredicted RBP9.31□□□□□ -0.92
HDDC2-201ENST00000318787 TMEM238LA0A1B0GVL6 79 aa9.3□□□□□ -0.92
HDDC2-201ENST00000318787 Q8NBF4 154 aa9.29□□□□□ -0.92
HDDC2-201ENST00000318787 CBY1Q9Y3M2 126 aa9.29□□□□□ -0.92
HDDC2-201ENST00000318787 S100A6P06703 90 aa9.28□□□□□ -0.92
HDDC2-201ENST00000318787 MOBPQ13875 183 aa9.27□□□□□ -0.93
HDDC2-201ENST00000318787 PCP2Q8IVA1 136 aa9.27□□□□□ -0.93
HDDC2-201ENST00000318787 HIST3H2BBQ8N257 126 aa9.27□□□□□ -0.93
HDDC2-201ENST00000318787 AKR1D1P51857 326 aa9.26□□□□□ -0.93
HDDC2-201ENST00000318787 LINC00483Q53H64 154 aa9.26□□□□□ -0.93
HDDC2-201ENST00000318787 SPANXDQ9BXN6 97 aa9.26□□□□□ -0.93
HDDC2-201ENST00000318787 SPAG11AQ6PDA7 123 aa9.25□□□□□ -0.93
HDDC2-201ENST00000318787 HIST1H2BLQ99880 126 aa9.25□□□□□ -0.93
HDDC2-201ENST00000318787 C9orf153Q5TBE3 101 aa9.24□□□□□ -0.93
HDDC2-201ENST00000318787 LINC00518Q8N0U6 118 aa9.24□□□□□ -0.93
HDDC2-201ENST00000318787 ST20-AS1Q8NBB2 130 aa9.24□□□□□ -0.93
HDDC2-201ENST00000318787 COPS9Q8WXC6 57 aa9.24□□□□□ -0.93
HDDC2-201ENST00000318787 KRTAP4-12Q9BQ66 201 aa9.24□□□□□ -0.93
HDDC2-201ENST00000318787 A6NDN8 102 aa9.23□□□□□ -0.93
HDDC2-201ENST00000318787 HSBP1L1C9JCN9 74 aa9.23□□□□□ -0.93
HDDC2-201ENST00000318787 C6orf99Q4VX62 202 aa9.23□□□□□ -0.93
HDDC2-201ENST00000318787 IGLV7-46A0A075B6I9 117 aa9.22□□□□□ -0.93
HDDC2-201ENST00000318787 MUSTN1Q8IVN3 82 aa9.22□□□□□ -0.93
HDDC2-201ENST00000318787 IFITM1P13164 125 aa9.21□□□□□ -0.94
HDDC2-201ENST00000318787 COX7BP24311 80 aa9.21□□□□□ -0.94
HDDC2-201ENST00000318787 SNRPEP62304 92 aaKnown RBP9.2□□□□□ -0.94
HDDC2-201ENST00000318787 CDIP1Q9H305 208 aa9.2□□□□□ -0.94
HDDC2-201ENST00000318787 DHRS4-AS1Q9P1J3 65 aa9.19□□□□□ -0.94
HDDC2-201ENST00000318787 SCGB1D1O95968 90 aa9.18□□□□□ -0.94
HDDC2-201ENST00000318787 SPINK1P00995 79 aa9.18□□□□□ -0.94
HDDC2-201ENST00000318787 CTAG1AP78358 180 aa9.18□□□□□ -0.94
HDDC2-201ENST00000318787 LCE3BQ5TA77 95 aa9.18□□□□□ -0.94
HDDC2-201ENST00000318787 Q6ZVH6 145 aa9.18□□□□□ -0.94
HDDC2-201ENST00000318787 ELOF1P60002 83 aaKnown RBP9.17□□□□□ -0.94
HDDC2-201ENST00000318787 SSBP3-AS1Q7Z2R9 100 aa9.17□□□□□ -0.94
HDDC2-201ENST00000318787 DEFB105AQ8NG35 78 aa9.17□□□□□ -0.94
HDDC2-201ENST00000318787 TAL2Q16559 108 aa9.14□□□□□ -0.95
HDDC2-201ENST00000318787 MUC2Q02817 5179 aa9.14□□□□□ -0.95
HDDC2-201ENST00000318787 TPRXLQ17RH7 258 aa9.13□□□□□ -0.95
HDDC2-201ENST00000318787 C5orf52A6NGY3 159 aa9.12□□□□□ -0.95
HDDC2-201ENST00000318787 Q1RN00 199 aa9.12□□□□□ -0.95
HDDC2-201ENST00000318787 SLC25A34Q6PIV7 304 aa9.12□□□□□ -0.95
HDDC2-201ENST00000318787 TRAV13-2A0A0B4J235 113 aa9.12□□□□□ -0.95
HDDC2-201ENST00000318787 A0A1B0GWB2 263 aa9.12□□□□□ -0.95
HDDC2-201ENST00000318787 HRCT1Q6UXD1 115 aa9.12□□□□□ -0.95
HDDC2-201ENST00000318787 LAMTOR3Q9UHA4 124 aa9.12□□□□□ -0.95
HDDC2-201ENST00000318787 FP248Q71RG6 208 aaPredicted RBP9.11□□□□□ -0.95
HDDC2-201ENST00000318787 SMIM11BQ8TCY0 68 aa9.1□□□□□ -0.95
HDDC2-201ENST00000318787 TRBV7-6A0A0J9YX20 115 aa9.09□□□□□ -0.95
HDDC2-201ENST00000318787 Q8N377 158 aa9.09□□□□□ -0.95
HDDC2-201ENST00000318787 A4D1N5 150 aa9.08□□□□□ -0.96
HDDC2-201ENST00000318787 SPRR1BP22528 89 aa9.08□□□□□ -0.96
HDDC2-201ENST00000318787 C12orf57Q99622 126 aa9.08□□□□□ -0.96
HDDC2-201ENST00000318787 TEX49A0A1B0GTD5 131 aa9.07□□□□□ -0.96
HDDC2-201ENST00000318787 SLC25A20O43772 301 aa9.07□□□□□ -0.96
HDDC2-201ENST00000318787 HIST1H4GQ99525 98 aa9.07□□□□□ -0.96
HDDC2-201ENST00000318787 RPS29P62273 56 aaKnown RBP9.06□□□□□ -0.96
HDDC2-201ENST00000318787 KRTAP19-1Q8IUB9 90 aa9.06□□□□□ -0.96
HDDC2-201ENST00000318787 VAMP3Q15836 100 aa9.04□□□□□ -0.96
HDDC2-201ENST00000318787 NHP2Q9NX24 153 aaKnown RBP9.04□□□□□ -0.96
HDDC2-201ENST00000318787 COX8AP10176 69 aa9.03□□□□□ -0.96
HDDC2-201ENST00000318787 PAM16Q9Y3D7 125 aa9.03□□□□□ -0.96
HDDC2-201ENST00000318787 C14orf144Q96I85 54 aa9.02□□□□□ -0.97
HDDC2-201ENST00000318787 KRTAP13-3Q3SY46 172 aa9.01□□□□□ -0.97
HDDC2-201ENST00000318787 SPATA45Q537H7 98 aa9.01□□□□□ -0.97
HDDC2-201ENST00000318787 LIMD2Q9BT23 127 aa9.01□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 142.9 ms