RNA–Protein interactions for RNA: ENST00000311351.8

LSM1-201, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM1, Length 1,147 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-201ENST00000311351 C3orf22Q8N5N4 141 aa9.51□□□□□ -0.89
LSM1-201ENST00000311351 LINC00337Q8N6G1 96 aa9.51□□□□□ -0.89
LSM1-201ENST00000311351 ETDCA0A1B0GVM5 59 aa9.5□□□□□ -0.89
LSM1-201ENST00000311351 EIF4EBP3O60516 100 aaPredicted RBP9.5□□□□□ -0.89
LSM1-201ENST00000311351 TIMM17BO60830 172 aa9.5□□□□□ -0.89
LSM1-201ENST00000311351 SOSTDC1Q6X4U4 206 aa9.5□□□□□ -0.89
LSM1-201ENST00000311351 LINC00304Q8N9R0 145 aa9.5□□□□□ -0.89
LSM1-201ENST00000311351 SPRR4Q96PI1 79 aa9.5□□□□□ -0.89
LSM1-201ENST00000311351 DDTP30046 118 aa9.49□□□□□ -0.89
LSM1-201ENST00000311351 ADAMTSL4-AS1Q5T5F5 129 aa9.49□□□□□ -0.89
LSM1-201ENST00000311351 SPANXB1Q9NS25 103 aaPredicted RBP9.49□□□□□ -0.89
LSM1-201ENST00000311351 TRBV10-2A0A0K0K1G8 114 aa9.48□□□□□ -0.89
LSM1-201ENST00000311351 HSBP1L1C9JCN9 74 aa9.47□□□□□ -0.89
LSM1-201ENST00000311351 NDUFC2O95298 119 aa9.47□□□□□ -0.89
LSM1-201ENST00000311351 ATOH7Q8N100 152 aa9.47□□□□□ -0.89
LSM1-201ENST00000311351 SMCR5Q8TEV8 140 aa9.47□□□□□ -0.89
LSM1-201ENST00000311351 SCGB1D4Q6XE38 83 aa9.46□□□□□ -0.9
LSM1-201ENST00000311351 RETNLBQ9BQ08 111 aa9.46□□□□□ -0.9
LSM1-201ENST00000311351 TTTY13Q9BZ97 58 aa9.46□□□□□ -0.9
LSM1-201ENST00000311351 ZNF706Q9Y5V0 76 aaPredicted RBP9.46□□□□□ -0.9
LSM1-201ENST00000311351 B5MCH6 92 aa9.45□□□□□ -0.9
LSM1-201ENST00000311351 COPS9Q8WXC6 57 aa9.45□□□□□ -0.9
LSM1-201ENST00000311351 LITAFQ99732 161 aa9.45□□□□□ -0.9
LSM1-201ENST00000311351 PPDPFQ9H3Y8 114 aa9.45□□□□□ -0.9
LSM1-201ENST00000311351 C5orf52A6NGY3 159 aa9.44□□□□□ -0.9
LSM1-201ENST00000311351 IGLV6-57P01721 117 aa9.44□□□□□ -0.9
LSM1-201ENST00000311351 CBY1Q9Y3M2 126 aa9.44□□□□□ -0.9
LSM1-201ENST00000311351 ANKRD39Q53RE8 183 aa9.43□□□□□ -0.9
LSM1-201ENST00000311351 S100A7L2Q5SY68 101 aa9.43□□□□□ -0.9
LSM1-201ENST00000311351 ERC2-IT1O76042 136 aa9.42□□□□□ -0.9
LSM1-201ENST00000311351 LINC00308Q8TCZ7 52 aa9.42□□□□□ -0.9
LSM1-201ENST00000311351 Q9BRP9 147 aa9.42□□□□□ -0.9
LSM1-201ENST00000311351 SPANXCQ9NY87 97 aa9.42□□□□□ -0.9
LSM1-201ENST00000311351 TRAV23DV6A0A075B6W5 121 aa9.41□□□□□ -0.9
LSM1-201ENST00000311351 Q6ZRX8 168 aa9.41□□□□□ -0.9
LSM1-201ENST00000311351 Q6ZVH6 145 aa9.41□□□□□ -0.9
LSM1-201ENST00000311351 SCGB1D1O95968 90 aa9.4□□□□□ -0.9
LSM1-201ENST00000311351 SPANXDQ9BXN6 97 aa9.4□□□□□ -0.9
LSM1-201ENST00000311351 LINC00483Q53H64 154 aa9.39□□□□□ -0.91
LSM1-201ENST00000311351 GAGE2AQ6NT46 116 aa9.39□□□□□ -0.91
LSM1-201ENST00000311351 IFITM1P13164 125 aa9.38□□□□□ -0.91
LSM1-201ENST00000311351 ZNF73O43830 326 aaPredicted RBP9.37□□□□□ -0.91
LSM1-201ENST00000311351 PCP2Q8IVA1 136 aa9.37□□□□□ -0.91
LSM1-201ENST00000311351 LINC00518Q8N0U6 118 aa9.37□□□□□ -0.91
LSM1-201ENST00000311351 Q8NBF4 154 aa9.37□□□□□ -0.91
LSM1-201ENST00000311351 LCE3BQ5TA77 95 aa9.36□□□□□ -0.91
LSM1-201ENST00000311351 KRTAP4-12Q9BQ66 201 aa9.35□□□□□ -0.91
LSM1-201ENST00000311351 HINT1P49773 126 aaPredicted RBP9.34□□□□□ -0.91
LSM1-201ENST00000311351 JOSD1Q15040 202 aaPredicted RBP9.34□□□□□ -0.91
LSM1-201ENST00000311351 OR13C6PQ8NH95 151 aa9.34□□□□□ -0.91
LSM1-201ENST00000311351 IGLV9-49A0A0B4J1Y8 123 aa9.33□□□□□ -0.92
LSM1-201ENST00000311351 MOBPQ13875 183 aa9.33□□□□□ -0.92
LSM1-201ENST00000311351 SPAG11AQ6PDA7 123 aa9.33□□□□□ -0.92
LSM1-201ENST00000311351 CTAG1AP78358 180 aa9.32□□□□□ -0.92
LSM1-201ENST00000311351 IGLV7-46A0A075B6I9 117 aa9.31□□□□□ -0.92
LSM1-201ENST00000311351 ST20-AS1Q8NBB2 130 aa9.31□□□□□ -0.92
LSM1-201ENST00000311351 MUC2Q02817 5179 aa9.31□□□□□ -0.92
LSM1-201ENST00000311351 TPRXLQ17RH7 258 aa9.28□□□□□ -0.92
LSM1-201ENST00000311351 MUSTN1Q8IVN3 82 aa9.28□□□□□ -0.92
LSM1-201ENST00000311351 TRAV13-2A0A0B4J235 113 aa9.26□□□□□ -0.93
LSM1-201ENST00000311351 COX8AP10176 69 aa9.26□□□□□ -0.93
LSM1-201ENST00000311351 C9orf153Q5TBE3 101 aa9.26□□□□□ -0.93
LSM1-201ENST00000311351 VAMP8Q9BV40 100 aa9.26□□□□□ -0.93
LSM1-201ENST00000311351 A6NDN8 102 aa9.25□□□□□ -0.93
LSM1-201ENST00000311351 DLEU1O43261 78 aa9.25□□□□□ -0.93
LSM1-201ENST00000311351 SPINK1P00995 79 aa9.25□□□□□ -0.93
LSM1-201ENST00000311351 C6orf99Q4VX62 202 aa9.25□□□□□ -0.93
LSM1-201ENST00000311351 CDIP1Q9H305 208 aa9.25□□□□□ -0.93
LSM1-201ENST00000311351 ELOF1P60002 83 aaKnown RBP9.24□□□□□ -0.93
LSM1-201ENST00000311351 SSBP3-AS1Q7Z2R9 100 aa9.24□□□□□ -0.93
LSM1-201ENST00000311351 KRTAP9-9Q9BYP9 154 aa9.24□□□□□ -0.93
LSM1-201ENST00000311351 KRTAP9-4Q9BYQ2 154 aa9.24□□□□□ -0.93
LSM1-201ENST00000311351 COX7BP24311 80 aa9.23□□□□□ -0.93
LSM1-201ENST00000311351 SPATA45Q537H7 98 aa9.23□□□□□ -0.93
LSM1-201ENST00000311351 DHRS4-AS1Q9P1J3 65 aa9.23□□□□□ -0.93
LSM1-201ENST00000311351 TMA7Q9Y2S6 64 aaKnown RBP9.23□□□□□ -0.93
LSM1-201ENST00000311351 PAM16Q9Y3D7 125 aa9.23□□□□□ -0.93
LSM1-201ENST00000311351 MUC17Q685J3 4493 aa9.23□□□□□ -0.93
LSM1-201ENST00000311351 TRBV7-6A0A0J9YX20 115 aa9.22□□□□□ -0.93
LSM1-201ENST00000311351 FP248Q71RG6 208 aaPredicted RBP9.22□□□□□ -0.93
LSM1-201ENST00000311351 HIST1H4GQ99525 98 aa9.22□□□□□ -0.93
LSM1-201ENST00000311351 SLC25A34Q6PIV7 304 aa9.2□□□□□ -0.94
LSM1-201ENST00000311351 Q8N377 158 aa9.2□□□□□ -0.94
LSM1-201ENST00000311351 SPRR1BP22528 89 aa9.19□□□□□ -0.94
LSM1-201ENST00000311351 RPS29P62273 56 aaKnown RBP9.19□□□□□ -0.94
LSM1-201ENST00000311351 C14orf144Q96I85 54 aa9.19□□□□□ -0.94
LSM1-201ENST00000311351 A0A1B0GWB2 263 aa9.18□□□□□ -0.94
LSM1-201ENST00000311351 A4D1N5 150 aa9.18□□□□□ -0.94
LSM1-201ENST00000311351 HIGD1BQ9P298 99 aa9.18□□□□□ -0.94
LSM1-201ENST00000311351 KRTAP13-3Q3SY46 172 aa9.17□□□□□ -0.94
LSM1-201ENST00000311351 VAMP3Q15836 100 aa9.15□□□□□ -0.94
LSM1-201ENST00000311351 DEFB105AQ8NG35 78 aa9.15□□□□□ -0.94
LSM1-201ENST00000311351 NHP2Q9NX24 153 aaKnown RBP9.15□□□□□ -0.94
LSM1-201ENST00000311351 SLC25A20O43772 301 aa9.14□□□□□ -0.95
LSM1-201ENST00000311351 Q1RN00 199 aa9.14□□□□□ -0.95
LSM1-201ENST00000311351 PYY3Q5JQD4 70 aa9.14□□□□□ -0.95
LSM1-201ENST00000311351 TAL2Q16559 108 aa9.13□□□□□ -0.95
LSM1-201ENST00000311351 SMIM11BQ8TCY0 68 aa9.13□□□□□ -0.95
LSM1-201ENST00000311351 LAMTOR3Q9UHA4 124 aa9.13□□□□□ -0.95
LSM1-201ENST00000311351 KRTAP4-8A0A0G2JLE6 195 aa9.12□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 315.4 ms