RNA–Protein interactions for RNA: ENST00000299185.12

DEPDC4-201, Transcript of DEP domain containing 4, humanhuman

TSL 1 (best)

Gene DEPDC4, Length 768 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4-201ENST00000299185 SPANXB1Q9NS25 103 aaPredicted RBP4.04□□□□□ -1.76
DEPDC4-201ENST00000299185 SPANXCQ9NY87 97 aa4.04□□□□□ -1.76
DEPDC4-201ENST00000299185 C22orf24Q9Y442 160 aa4.04□□□□□ -1.76
DEPDC4-201ENST00000299185 HSPG2P98160 4391 aa4.04□□□□□ -1.76
DEPDC4-201ENST00000299185 IGKV2-28A0A075B6P5 120 aa4.03□□□□□ -1.76
DEPDC4-201ENST00000299185 K7ERJ3 54 aa4.03□□□□□ -1.76
DEPDC4-201ENST00000299185 TRIAP1O43715 76 aa4.03□□□□□ -1.76
DEPDC4-201ENST00000299185 IGKV2D-28P01615 120 aa4.03□□□□□ -1.76
DEPDC4-201ENST00000299185 FXYD2P54710 66 aa4.03□□□□□ -1.76
DEPDC4-201ENST00000299185 HSD52Q0P140 79 aa4.03□□□□□ -1.76
DEPDC4-201ENST00000299185 SRSF9Q13242 221 aaKnown RBP eCLIP4.03□□□□□ -1.76
DEPDC4-201ENST00000299185 COX17Q14061 63 aa4.03□□□□□ -1.76
DEPDC4-201ENST00000299185 NKAPP1Q8N9T2 125 aa4.03□□□□□ -1.76
DEPDC4-201ENST00000299185 HIST1H4GQ99525 98 aa4.03□□□□□ -1.76
DEPDC4-201ENST00000299185 IGLV5-37A0A075B6J1 123 aa4.02□□□□□ -1.77
DEPDC4-201ENST00000299185 TRBV10-3A0A0K0K1G6 114 aa4.02□□□□□ -1.77
DEPDC4-201ENST00000299185 A4D1N5 150 aa4.02□□□□□ -1.77
DEPDC4-201ENST00000299185 M0R143 59 aa4.02□□□□□ -1.77
DEPDC4-201ENST00000299185 IFITM1P13164 125 aa4.02□□□□□ -1.77
DEPDC4-201ENST00000299185 UBE2BP63146 152 aa4.02□□□□□ -1.77
DEPDC4-201ENST00000299185 CEND1Q8N111 149 aa4.02□□□□□ -1.77
DEPDC4-201ENST00000299185 LINC00337Q8N6G1 96 aa4.02□□□□□ -1.77
DEPDC4-201ENST00000299185 LINC00167Q96N53 147 aa4.02□□□□□ -1.77
DEPDC4-201ENST00000299185 PKIGQ9Y2B9 76 aa4.02□□□□□ -1.77
DEPDC4-201ENST00000299185 EPM2AB3EWF7 344 aa4.01□□□□□ -1.77
DEPDC4-201ENST00000299185 CDK2AP2O75956 126 aa4.01□□□□□ -1.77
DEPDC4-201ENST00000299185 HINT1P49773 126 aaPredicted RBP4.01□□□□□ -1.77
DEPDC4-201ENST00000299185 BVES-AS1Q5T3Y7 98 aa4.01□□□□□ -1.77
DEPDC4-201ENST00000299185 Q5VSD8 79 aa4.01□□□□□ -1.77
DEPDC4-201ENST00000299185 MRPL55Q7Z7F7 128 aaKnown RBP4.01□□□□□ -1.77
DEPDC4-201ENST00000299185 COPS9Q8WXC6 57 aa4.01□□□□□ -1.77
DEPDC4-201ENST00000299185 SNHG12Q9BXW3 62 aa4.01□□□□□ -1.77
DEPDC4-201ENST00000299185 PPDPFQ9H3Y8 114 aa4.01□□□□□ -1.77
DEPDC4-201ENST00000299185 LOC107984156A0A0G2JMH3 177 aa4□□□□□ -1.77
DEPDC4-201ENST00000299185 KRTAP10-4P60372 401 aaPredicted RBP4□□□□□ -1.77
DEPDC4-201ENST00000299185 RPL37AP61513 92 aaKnown RBP4□□□□□ -1.77
DEPDC4-201ENST00000299185 LBHQ53QV2 105 aaPredicted RBP4□□□□□ -1.77
DEPDC4-201ENST00000299185 ARL17AQ8IVW1 177 aa4□□□□□ -1.77
DEPDC4-201ENST00000299185 LINC00474Q9P2X8 69 aa4□□□□□ -1.77
DEPDC4-201ENST00000299185 PSORS1C2Q9UIG4 136 aa4□□□□□ -1.77
DEPDC4-201ENST00000299185 A6NDN8 102 aa3.99□□□□□ -1.77
DEPDC4-201ENST00000299185 H7C2G1 150 aa3.99□□□□□ -1.77
DEPDC4-201ENST00000299185 M0R378 163 aa3.99□□□□□ -1.77
DEPDC4-201ENST00000299185 RPL13AP40429 203 aaKnown RBP3.99□□□□□ -1.77
DEPDC4-201ENST00000299185 PRLHP81277 87 aa3.99□□□□□ -1.77
DEPDC4-201ENST00000299185 RPL24P83731 157 aaKnown RBP3.99□□□□□ -1.77
DEPDC4-201ENST00000299185 C1orf137Q5JT78 98 aa3.99□□□□□ -1.77
DEPDC4-201ENST00000299185 Q8N9P0 234 aaPredicted RBP3.99□□□□□ -1.77
DEPDC4-201ENST00000299185 OR13C6PQ8NH95 151 aa3.99□□□□□ -1.77
DEPDC4-201ENST00000299185 FAT1Q14517 4588 aa3.99□□□□□ -1.77
DEPDC4-201ENST00000299185 DMBT1Q9UGM3 2413 aaPredicted RBP3.98□□□□□ -1.77
DEPDC4-201ENST00000299185 A0A1B0GWB2 263 aa3.98□□□□□ -1.77
DEPDC4-201ENST00000299185 BATFQ16520 125 aa3.98□□□□□ -1.77
DEPDC4-201ENST00000299185 COL5A1-AS1Q5SY13 56 aa3.98□□□□□ -1.77
DEPDC4-201ENST00000299185 NAA38Q9BRA0 125 aaKnown RBP3.98□□□□□ -1.77
DEPDC4-201ENST00000299185 NHP2Q9NX24 153 aaKnown RBP3.98□□□□□ -1.77
DEPDC4-201ENST00000299185 IGLV1-50A0A075B6I6 118 aa3.97□□□□□ -1.77
DEPDC4-201ENST00000299185 NDUFC2O95298 119 aa3.97□□□□□ -1.77
DEPDC4-201ENST00000299185 IGLV6-57P01721 117 aa3.97□□□□□ -1.77
DEPDC4-201ENST00000299185 S100A7L2Q5SY68 101 aa3.97□□□□□ -1.77
DEPDC4-201ENST00000299185 TMEM126AQ9H061 195 aa3.97□□□□□ -1.77
DEPDC4-201ENST00000299185 PKHD1L1Q86WI1 4243 aa3.97□□□□□ -1.77
DEPDC4-201ENST00000299185 TRAV23DV6A0A075B6W5 121 aa3.96□□□□□ -1.78
DEPDC4-201ENST00000299185 TRBV10-2A0A0K0K1G8 114 aa3.96□□□□□ -1.78
DEPDC4-201ENST00000299185 PRYO14603 147 aa3.96□□□□□ -1.78
DEPDC4-201ENST00000299185 CFC1BP0CG36 223 aa3.96□□□□□ -1.78
DEPDC4-201ENST00000299185 CFC1P0CG37 223 aa3.96□□□□□ -1.78
DEPDC4-201ENST00000299185 REG3GQ6UW15 175 aa3.96□□□□□ -1.78
DEPDC4-201ENST00000299185 FAM19A1Q7Z5A9 133 aa3.96□□□□□ -1.78
DEPDC4-201ENST00000299185 A0A0B4J2C4 111 aa3.95□□□□□ -1.78
DEPDC4-201ENST00000299185 SMIM11BQ8TCY0 68 aa3.95□□□□□ -1.78
DEPDC4-201ENST00000299185 PRO1854Q9UHT4 67 aa3.95□□□□□ -1.78
DEPDC4-201ENST00000299185 TAX1BP3O14907 124 aa3.94□□□□□ -1.78
DEPDC4-201ENST00000299185 ZNF73O43830 326 aaPredicted RBP3.94□□□□□ -1.78
DEPDC4-201ENST00000299185 BCE1O60756 84 aa3.94□□□□□ -1.78
DEPDC4-201ENST00000299185 ERC2-IT1O76042 136 aa3.94□□□□□ -1.78
DEPDC4-201ENST00000299185 IGLV7-43P04211 117 aa3.94□□□□□ -1.78
DEPDC4-201ENST00000299185 UBE2AP49459 152 aa3.94□□□□□ -1.78
DEPDC4-201ENST00000299185 C6orf99Q4VX62 202 aa3.94□□□□□ -1.78
DEPDC4-201ENST00000299185 KRTAP13-1Q8IUC0 172 aa3.94□□□□□ -1.78
DEPDC4-201ENST00000299185 RAB37Q96AX2 223 aa3.94□□□□□ -1.78
DEPDC4-201ENST00000299185 TRAV13-2A0A0B4J235 113 aa3.93□□□□□ -1.78
DEPDC4-201ENST00000299185 ETDCA0A1B0GVM5 59 aa3.93□□□□□ -1.78
DEPDC4-201ENST00000299185 KRTAP4-16G5E9R7 235 aaPredicted RBP3.93□□□□□ -1.78
DEPDC4-201ENST00000299185 TSPAN13O95857 204 aa3.93□□□□□ -1.78
DEPDC4-201ENST00000299185 SPRR1AP35321 89 aa3.93□□□□□ -1.78
DEPDC4-201ENST00000299185 Q1RN00 199 aa3.93□□□□□ -1.78
DEPDC4-201ENST00000299185 DIRC1Q969H9 104 aa3.93□□□□□ -1.78
DEPDC4-201ENST00000299185 Q9BRP9 147 aa3.93□□□□□ -1.78
DEPDC4-201ENST00000299185 HIGD2AQ9BW72 106 aa3.93□□□□□ -1.78
DEPDC4-201ENST00000299185 KCNQ1DNQ9H478 68 aa3.93□□□□□ -1.78
DEPDC4-201ENST00000299185 ANAPC11Q9NYG5 84 aa3.93□□□□□ -1.78
DEPDC4-201ENST00000299185 LCE1EQ5T753 118 aa3.92□□□□□ -1.78
DEPDC4-201ENST00000299185 ST20-AS1Q8NBB2 130 aa3.92□□□□□ -1.78
DEPDC4-201ENST00000299185 SMCR5Q8TEV8 140 aa3.92□□□□□ -1.78
DEPDC4-201ENST00000299185 VPS13BQ7Z7G8 4022 aa3.92□□□□□ -1.78
DEPDC4-201ENST00000299185 COX7BP24311 80 aa3.91□□□□□ -1.78
DEPDC4-201ENST00000299185 CLEC2BQ92478 149 aa3.91□□□□□ -1.78
DEPDC4-201ENST00000299185 FAM218AQ96MZ4 157 aa3.91□□□□□ -1.78
DEPDC4-201ENST00000299185 H3BUT2 72 aa3.9□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms