RNA–Protein interactions for RNA: ENST00000264555.9

PHRF1-201, Transcript of PHD and ring finger domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PHRF1, Length 5,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHRF1-201ENST00000264555 PCOTHQ58A44 107 aa11.04□□□□□ -0.64
PHRF1-201ENST00000264555 LIMD2Q9BT23 127 aa11.03□□□□□ -0.64
PHRF1-201ENST00000264555 TM2D3Q9BRN9 247 aa11.03□□□□□ -0.64
PHRF1-201ENST00000264555 C9orf129Q5T035 196 aaKnown RBP11.02□□□□□ -0.65
PHRF1-201ENST00000264555 HELZ2Q9BYK8 2649 aaKnown RBP11.02□□□□□ -0.65
PHRF1-201ENST00000264555 TLX1NBP0CAT3 122 aa11.02□□□□□ -0.65
PHRF1-201ENST00000264555 C1orf64Q8NEQ6 169 aa11.02□□□□□ -0.65
PHRF1-201ENST00000264555 VPS13AQ96RL7 3174 aa11.02□□□□□ -0.65
PHRF1-201ENST00000264555 CFAP46Q8IYW2 2715 aa11.01□□□□□ -0.65
PHRF1-201ENST00000264555 PLA2G2DQ9UNK4 145 aa10.99□□□□□ -0.65
PHRF1-201ENST00000264555 TP53AIP1Q9HCN2 124 aa10.99□□□□□ -0.65
PHRF1-201ENST00000264555 PRO0628Q9UI54 55 aa10.98□□□□□ -0.65
PHRF1-201ENST00000264555 PSPHP1O15172 72 aa10.95□□□□□ -0.66
PHRF1-201ENST00000264555 RPS28P62857 69 aaKnown RBP10.95□□□□□ -0.66
PHRF1-201ENST00000264555 ATRQ13535 2644 aa10.95□□□□□ -0.66
PHRF1-201ENST00000264555 RETNLBQ9BQ08 111 aa10.95□□□□□ -0.66
PHRF1-201ENST00000264555 CR1P17927 2039 aa10.94□□□□□ -0.66
PHRF1-201ENST00000264555 Q8N377 158 aa10.93□□□□□ -0.66
PHRF1-201ENST00000264555 LINC01600Q96MT4 127 aa10.93□□□□□ -0.66
PHRF1-201ENST00000264555 LAMA1P25391 3075 aa10.92□□□□□ -0.66
PHRF1-201ENST00000264555 DSPP15924 2871 aaKnown RBP10.92□□□□□ -0.66
PHRF1-201ENST00000264555 H3BPC8 53 aa10.91□□□□□ -0.66
PHRF1-201ENST00000264555 WIPF1O43516 503 aa10.91□□□□□ -0.66
PHRF1-201ENST00000264555 USP24Q9UPU5 2620 aa10.9□□□□□ -0.67
PHRF1-201ENST00000264555 VCANP13611 3396 aa10.89□□□□□ -0.67
PHRF1-201ENST00000264555 MGAM2Q2M2H8 2515 aa10.89□□□□□ -0.67
PHRF1-201ENST00000264555 RPL37AP61513 92 aaKnown RBP10.89□□□□□ -0.67
PHRF1-201ENST00000264555 WWC2-AS2Q96NR7 200 aa10.89□□□□□ -0.67
PHRF1-201ENST00000264555 C9orf163Q8N9P6 203 aa10.88□□□□□ -0.67
PHRF1-201ENST00000264555 DNAH14Q0VDD8 3507 aa10.88□□□□□ -0.67
PHRF1-201ENST00000264555 IGFL1Q6UW32 110 aa10.88□□□□□ -0.67
PHRF1-201ENST00000264555 K7EQZ3 153 aa10.87□□□□□ -0.67
PHRF1-201ENST00000264555 CASC10Q5T4H9 136 aa10.87□□□□□ -0.67
PHRF1-201ENST00000264555 ERC2-IT1O76042 136 aa10.87□□□□□ -0.67
PHRF1-201ENST00000264555 A8MWP4 228 aa10.86□□□□□ -0.67
PHRF1-201ENST00000264555 SPACA4Q8TDM5 124 aa10.86□□□□□ -0.67
PHRF1-201ENST00000264555 OBSCN-AS1Q96MR7 158 aa10.85□□□□□ -0.67
PHRF1-201ENST00000264555 TRAV22A0A0B4J277 110 aa10.85□□□□□ -0.67
PHRF1-201ENST00000264555 CNBPP62633 177 aaKnown RBP10.85□□□□□ -0.67
PHRF1-201ENST00000264555 APLNQ9ULZ1 77 aa10.85□□□□□ -0.67
PHRF1-201ENST00000264555 A0A087WTM6 91 aa10.82□□□□□ -0.68
PHRF1-201ENST00000264555 IGLV5-37A0A075B6J1 123 aa10.81□□□□□ -0.68
PHRF1-201ENST00000264555 A0A1W2PNN7 141 aa10.8□□□□□ -0.68
PHRF1-201ENST00000264555 IGKV2D-30A0A075B6S6 120 aa10.79□□□□□ -0.68
PHRF1-201ENST00000264555 IGKV2-30P06310 120 aa10.79□□□□□ -0.68
PHRF1-201ENST00000264555 MAST4O15021 2626 aa10.79□□□□□ -0.68
PHRF1-201ENST00000264555 LINC00313P59037 77 aa10.79□□□□□ -0.68
PHRF1-201ENST00000264555 FRYQ5TBA9 3013 aa10.78□□□□□ -0.68
PHRF1-201ENST00000264555 IGSF10Q6WRI0 2623 aa10.78□□□□□ -0.68
PHRF1-201ENST00000264555 C4orf26Q17RF5 130 aa10.78□□□□□ -0.68
PHRF1-201ENST00000264555 TYMSOSQ8TAI1 123 aa10.77□□□□□ -0.68
PHRF1-201ENST00000264555 ZNF861PO60384 105 aa10.77□□□□□ -0.69
PHRF1-201ENST00000264555 CELSR3Q9NYQ7 3312 aa10.77□□□□□ -0.69
PHRF1-201ENST00000264555 KLKP1Q107X0 134 aa10.76□□□□□ -0.69
PHRF1-201ENST00000264555 PRR15Q8IV56 129 aa10.75□□□□□ -0.69
PHRF1-201ENST00000264555 SPINK1P00995 79 aa10.74□□□□□ -0.69
PHRF1-201ENST00000264555 IGLV5-48A0A075B6I7 105 aa10.74□□□□□ -0.69
PHRF1-201ENST00000264555 A0A1W2PNM2 257 aa10.73□□□□□ -0.69
PHRF1-201ENST00000264555 ACYP2P14621 99 aa10.73□□□□□ -0.69
PHRF1-201ENST00000264555 C8orf87E5RJ46 101 aa10.73□□□□□ -0.69
PHRF1-201ENST00000264555 A0A0G2JQZ4 141 aa10.72□□□□□ -0.69
PHRF1-201ENST00000264555 MRPL34Q9BQ48 92 aaKnown RBP10.72□□□□□ -0.69
PHRF1-201ENST00000264555 MAP1AP78559 2803 aaPredicted RBP10.7□□□□□ -0.7
PHRF1-201ENST00000264555 SSBP3-AS1Q7Z2R9 100 aa10.69□□□□□ -0.7
PHRF1-201ENST00000264555 C7orf65Q6ZTY9 151 aa10.69□□□□□ -0.7
PHRF1-201ENST00000264555 LOC101927531A0A1B0GV80 90 aa10.69□□□□□ -0.7
PHRF1-201ENST00000264555 PLA2G1BP04054 148 aaKnown RBP10.67□□□□□ -0.7
PHRF1-201ENST00000264555 C8orf17Q9NRJ1 99 aa10.67□□□□□ -0.7
PHRF1-201ENST00000264555 FAM229AH3BQW9 127 aa10.66□□□□□ -0.7
PHRF1-201ENST00000264555 PSORS1C2Q9UIG4 136 aa10.66□□□□□ -0.7
PHRF1-201ENST00000264555 A0A1B0GU69 56 aa10.65□□□□□ -0.7
PHRF1-201ENST00000264555 SPRR4Q96PI1 79 aa10.65□□□□□ -0.7
PHRF1-201ENST00000264555 CHD6Q8TD26 2715 aa10.65□□□□□ -0.7
PHRF1-201ENST00000264555 SPTBN5Q9NRC6 3674 aaKnown RBP10.65□□□□□ -0.71
PHRF1-201ENST00000264555 UNC79Q9P2D8 2635 aa10.64□□□□□ -0.71
PHRF1-201ENST00000264555 A0A1B0GVX0 72 aa10.64□□□□□ -0.71
PHRF1-201ENST00000264555 Q8NDZ9 215 aa10.63□□□□□ -0.71
PHRF1-201ENST00000264555 H7BZZ5 65 aa10.63□□□□□ -0.71
PHRF1-201ENST00000264555 IGLV7-43P04211 117 aa10.63□□□□□ -0.71
PHRF1-201ENST00000264555 SPAG11AQ6PDA7 123 aa10.62□□□□□ -0.71
PHRF1-201ENST00000264555 Q96NJ1 140 aa10.6□□□□□ -0.71
PHRF1-201ENST00000264555 ANAPC11Q9NYG5 84 aa10.59□□□□□ -0.71
PHRF1-201ENST00000264555 TEX15Q9BXT5 2789 aa10.57□□□□□ -0.72
PHRF1-201ENST00000264555 NBEAQ8NFP9 2946 aa10.56□□□□□ -0.72
PHRF1-201ENST00000264555 BOD1L1Q8NFC6 3051 aa10.55□□□□□ -0.72
PHRF1-201ENST00000264555 TNRC18O15417 2968 aaPredicted RBP10.55□□□□□ -0.72
PHRF1-201ENST00000264555 DSCR10P59022 87 aa10.55□□□□□ -0.72
PHRF1-201ENST00000264555 COL6A3P12111 3177 aa10.54□□□□□ -0.72
PHRF1-201ENST00000264555 ATMQ13315 3056 aa10.54□□□□□ -0.72
PHRF1-201ENST00000264555 GCN1Q92616 2671 aaKnown RBP10.54□□□□□ -0.72
PHRF1-201ENST00000264555 COA5Q86WW8 74 aa10.53□□□□□ -0.72
PHRF1-201ENST00000264555 ADGRG4Q8IZF6 3080 aa10.53□□□□□ -0.72
PHRF1-201ENST00000264555 SPRR1AP35321 89 aa10.53□□□□□ -0.72
PHRF1-201ENST00000264555 KRTAP26-1Q6PEX3 210 aa10.51□□□□□ -0.73
PHRF1-201ENST00000264555 FRYLO94915 3013 aa10.51□□□□□ -0.73
PHRF1-201ENST00000264555 FLNCQ14315 2725 aa10.5□□□□□ -0.73
PHRF1-201ENST00000264555 LINC00304Q8N9R0 145 aa10.5□□□□□ -0.73
PHRF1-201ENST00000264555 REV3LO60673 3130 aa10.5□□□□□ -0.73
PHRF1-201ENST00000264555 CYP4F30PQ9H0H9 118 aa10.5□□□□□ -0.73
PHRF1-201ENST00000264555 TEP1Q99973 2627 aaKnown RBP10.49□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms