RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 Q6ZRP5 223 aa3.23□□□□□ -1.89
SCN1A-220ENST00000641603 OCR1Q9BZK8 76 aa3.22□□□□□ -1.89
SCN1A-220ENST00000641603 BDP1A6H8Y1 2624 aa3.22□□□□□ -1.89
SCN1A-220ENST00000641603 HIVEP3Q5T1R4 2406 aa3.22□□□□□ -1.89
SCN1A-220ENST00000641603 KCNQ1DNQ9H478 68 aa3.22□□□□□ -1.89
SCN1A-220ENST00000641603 C11orf45Q8TAV5 145 aa3.22□□□□□ -1.89
SCN1A-220ENST00000641603 IGLV1-51P01701 117 aa3.22□□□□□ -1.89
SCN1A-220ENST00000641603 F8P00451 2351 aa3.22□□□□□ -1.89
SCN1A-220ENST00000641603 LINC01554Q52M75 96 aa3.22□□□□□ -1.89
SCN1A-220ENST00000641603 C19orf84I3L1E1 186 aa3.21□□□□□ -1.89
SCN1A-220ENST00000641603 KIAA0087Q14695 138 aa3.21□□□□□ -1.89
SCN1A-220ENST00000641603 PTPRBP23467 1997 aa3.21□□□□□ -1.89
SCN1A-220ENST00000641603 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP3.21□□□□□ -1.9
SCN1A-220ENST00000641603 LINC01006Q8NI28 216 aa3.21□□□□□ -1.9
SCN1A-220ENST00000641603 PRR3P79522 188 aaKnown RBP3.21□□□□□ -1.9
SCN1A-220ENST00000641603 IGHV6-1A0A0B4J1U7 121 aa3.2□□□□□ -1.9
SCN1A-220ENST00000641603 PHF5AQ7RTV0 110 aaKnown RBP3.2□□□□□ -1.9
SCN1A-220ENST00000641603 LINC00528Q8N1L1 170 aa3.2□□□□□ -1.9
SCN1A-220ENST00000641603 IGKV2-24A0A0C4DH68 120 aa3.2□□□□□ -1.9
SCN1A-220ENST00000641603 MIR22HGQ0VDD5 57 aa3.2□□□□□ -1.9
SCN1A-220ENST00000641603 PCOTHQ58A44 107 aa3.2□□□□□ -1.9
SCN1A-220ENST00000641603 Q8NA96 180 aa3.2□□□□□ -1.9
SCN1A-220ENST00000641603 PLA2G2DQ9UNK4 145 aa3.2□□□□□ -1.9
SCN1A-220ENST00000641603 Q6ZSN1 163 aa3.19□□□□□ -1.9
SCN1A-220ENST00000641603 IGLV5-48A0A075B6I7 105 aa3.19□□□□□ -1.9
SCN1A-220ENST00000641603 GRNP28799 593 aaKnown RBP3.19□□□□□ -1.9
SCN1A-220ENST00000641603 A0A1W2PNU3 283 aaPredicted RBP3.19□□□□□ -1.9
SCN1A-220ENST00000641603 MDFIQ99750 246 aa3.19□□□□□ -1.9
SCN1A-220ENST00000641603 LINC01556Q5JQF7 62 aa3.19□□□□□ -1.9
SCN1A-220ENST00000641603 LINC01558Q9Y6Z2 57 aa3.18□□□□□ -1.9
SCN1A-220ENST00000641603 LINC00476Q8WZB0 136 aa3.18□□□□□ -1.9
SCN1A-220ENST00000641603 C16orf95Q9H693 158 aa3.18□□□□□ -1.9
SCN1A-220ENST00000641603 ANKRD17O75179 2603 aaKnown RBP3.18□□□□□ -1.9
SCN1A-220ENST00000641603 PLA2G2AP14555 144 aa3.18□□□□□ -1.9
SCN1A-220ENST00000641603 CDSNQ15517 529 aa3.18□□□□□ -1.9
SCN1A-220ENST00000641603 FP248Q71RG6 208 aaPredicted RBP3.18□□□□□ -1.9
SCN1A-220ENST00000641603 LINC00588Q9Y4M8 146 aa3.17□□□□□ -1.9
SCN1A-220ENST00000641603 EPM2AB3EWF7 344 aa3.17□□□□□ -1.9
SCN1A-220ENST00000641603 IGLV7-46A0A075B6I9 117 aa3.17□□□□□ -1.9
SCN1A-220ENST00000641603 EIF4EBP3O60516 100 aaPredicted RBP3.16□□□□□ -1.9
SCN1A-220ENST00000641603 MRPL34Q9BQ48 92 aaKnown RBP3.16□□□□□ -1.9
SCN1A-220ENST00000641603 H3BS24 57 aa3.16□□□□□ -1.9
SCN1A-220ENST00000641603 DOPEY1Q5JWR5 2465 aa3.16□□□□□ -1.9
SCN1A-220ENST00000641603 TLX1NBP0CAT3 122 aa3.16□□□□□ -1.9
SCN1A-220ENST00000641603 K7EQZ3 153 aa3.15□□□□□ -1.9
SCN1A-220ENST00000641603 USP9XQ93008 2570 aaPredicted RBP3.15□□□□□ -1.9
SCN1A-220ENST00000641603 C22orf24Q9Y442 160 aa3.15□□□□□ -1.9
SCN1A-220ENST00000641603 DMAC1Q96GE9 116 aa3.15□□□□□ -1.9
SCN1A-220ENST00000641603 SPRR4Q96PI1 79 aa3.15□□□□□ -1.91
SCN1A-220ENST00000641603 SPINT4Q6UDR6 99 aa3.15□□□□□ -1.91
SCN1A-220ENST00000641603 Q8N9P0 234 aaPredicted RBP3.14□□□□□ -1.91
SCN1A-220ENST00000641603 SPINK6Q6UWN8 80 aa3.14□□□□□ -1.91
SCN1A-220ENST00000641603 FAM104AQ969W3 186 aa3.14□□□□□ -1.91
SCN1A-220ENST00000641603 A0A096LNI7 61 aa3.14□□□□□ -1.91
SCN1A-220ENST00000641603 IGLV5-37A0A075B6J1 123 aa3.14□□□□□ -1.91
SCN1A-220ENST00000641603 PKD1L2Q7Z442 2459 aa3.14□□□□□ -1.91
SCN1A-220ENST00000641603 FSHBP01225 129 aa3.13□□□□□ -1.91
SCN1A-220ENST00000641603 IGLV9-49A0A0B4J1Y8 123 aa3.13□□□□□ -1.91
SCN1A-220ENST00000641603 PRR34Q9NV39 138 aa3.13□□□□□ -1.91
SCN1A-220ENST00000641603 CRIPTQ9P021 101 aa3.13□□□□□ -1.91
SCN1A-220ENST00000641603 C8orf17Q9NRJ1 99 aa3.13□□□□□ -1.91
SCN1A-220ENST00000641603 KMT2BQ9UMN6 2715 aaPredicted RBP3.13□□□□□ -1.91
SCN1A-220ENST00000641603 LINC00612Q8N6U2 182 aa3.13□□□□□ -1.91
SCN1A-220ENST00000641603 C16orf90A8MZG2 172 aa3.13□□□□□ -1.91
SCN1A-220ENST00000641603 A0A1B0GVX0 72 aa3.13□□□□□ -1.91
SCN1A-220ENST00000641603 FN1P02751 2386 aaKnown RBP3.12□□□□□ -1.91
SCN1A-220ENST00000641603 DEFB4AO15263 64 aa3.12□□□□□ -1.91
SCN1A-220ENST00000641603 Q5VV11 94 aa3.12□□□□□ -1.91
SCN1A-220ENST00000641603 NOTCH2Q04721 2471 aa3.12□□□□□ -1.91
SCN1A-220ENST00000641603 IGLV1-50A0A075B6I6 118 aa3.12□□□□□ -1.91
SCN1A-220ENST00000641603 C15orf56Q8N910 161 aa3.12□□□□□ -1.91
SCN1A-220ENST00000641603 MAPK1IP1LQ8NDC0 245 aa3.11□□□□□ -1.91
SCN1A-220ENST00000641603 ANKRD11Q6UB99 2663 aaPredicted RBP3.11□□□□□ -1.91
SCN1A-220ENST00000641603 PCSK5Q92824 1860 aa3.11□□□□□ -1.91
SCN1A-220ENST00000641603 C2CD3Q4AC94 2353 aa3.1□□□□□ -1.91
SCN1A-220ENST00000641603 C10orf99Q6UWK7 81 aa3.1□□□□□ -1.91
SCN1A-220ENST00000641603 LINC00313P59037 77 aa3.1□□□□□ -1.91
SCN1A-220ENST00000641603 Q8N377 158 aa3.1□□□□□ -1.91
SCN1A-220ENST00000641603 NUPR2A6NF83 97 aa3.1□□□□□ -1.91
SCN1A-220ENST00000641603 IGFL1Q6UW32 110 aa3.1□□□□□ -1.91
SCN1A-220ENST00000641603 WDR87Q6ZQQ6 2873 aa3.09□□□□□ -1.91
SCN1A-220ENST00000641603 SSBP3-AS1Q7Z2R9 100 aa3.09□□□□□ -1.91
SCN1A-220ENST00000641603 SPTBN4Q9H254 2564 aa3.09□□□□□ -1.91
SCN1A-220ENST00000641603 Q8NAQ8 132 aa3.09□□□□□ -1.91
SCN1A-220ENST00000641603 A0A1W2PNM2 257 aa3.09□□□□□ -1.92
SCN1A-220ENST00000641603 IGKV2D-30A0A075B6S6 120 aa3.08□□□□□ -1.92
SCN1A-220ENST00000641603 IGKV2-30P06310 120 aa3.08□□□□□ -1.92
SCN1A-220ENST00000641603 MTORP42345 2549 aa3.08□□□□□ -1.92
SCN1A-220ENST00000641603 OXTP01178 125 aa3.08□□□□□ -1.92
SCN1A-220ENST00000641603 PRLHP81277 87 aa3.08□□□□□ -1.92
SCN1A-220ENST00000641603 DEFB116Q30KQ4 102 aa3.08□□□□□ -1.92
SCN1A-220ENST00000641603 ST20-AS1Q8NBB2 130 aa3.08□□□□□ -1.92
SCN1A-220ENST00000641603 IGLV8-61A0A075B6I0 122 aa3.07□□□□□ -1.92
SCN1A-220ENST00000641603 DNAH10OSP0CZ25 163 aa3.07□□□□□ -1.92
SCN1A-220ENST00000641603 SPINK1P00995 79 aa3.07□□□□□ -1.92
SCN1A-220ENST00000641603 TLN1Q9Y490 2541 aaKnown RBP3.07□□□□□ -1.92
SCN1A-220ENST00000641603 ZFHX2Q9C0A1 2572 aaPredicted RBP3.07□□□□□ -1.92
SCN1A-220ENST00000641603 NAV2Q8IVL1 2488 aa3.07□□□□□ -1.92
SCN1A-220ENST00000641603 X6R8D5 127 aa3.07□□□□□ -1.92
SCN1A-220ENST00000641603 CIRBP-AS1Q8TBR5 109 aa3.07□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 52.5 ms