RNA–Protein interactions for RNA: ENST00000641597.1

PHGDH-223, Transcript of phosphoglycerate dehydrogenase, human

APPRIS P1 BASIC

Gene PHGDH, Length 2,585 nt, Biotype protein coding, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PHGDH-223	ENST00000641597	XAGE1A	Q9HD64	81 aa		11.35	□□□□□ -0.59
PHGDH-223	ENST00000641597	LINC01561	Q8N1V8	128 aa		11.34	□□□□□ -0.59
PHGDH-223	ENST00000641597	RPL18A	Q02543	176 aa	Known RBP	11.34	□□□□□ -0.59
PHGDH-223	ENST00000641597	LELP1	Q5T871	98 aa		11.33	□□□□□ -0.6
PHGDH-223	ENST00000641597		A0A087WVE0	104 aa		11.33	□□□□□ -0.6
PHGDH-223	ENST00000641597	WFDC10B	Q8IUB3	73 aa		11.33	□□□□□ -0.6
PHGDH-223	ENST00000641597	TMEM126A	Q9H061	195 aa		11.33	□□□□□ -0.6
PHGDH-223	ENST00000641597	S100A7L2	Q5SY68	101 aa		11.32	□□□□□ -0.6
PHGDH-223	ENST00000641597	COX17	Q14061	63 aa		11.32	□□□□□ -0.6
PHGDH-223	ENST00000641597	LYPD5	Q6UWN5	251 aa		11.32	□□□□□ -0.6
PHGDH-223	ENST00000641597	HIGD2B	Q4VC39	106 aa		11.31	□□□□□ -0.6
PHGDH-223	ENST00000641597	NDUFC2	O95298	119 aa		11.3	□□□□□ -0.6
PHGDH-223	ENST00000641597	PRR34	Q9NV39	138 aa		11.3	□□□□□ -0.6
PHGDH-223	ENST00000641597	KRTAP10-11	P60412	298 aa		11.29	□□□□□ -0.6
PHGDH-223	ENST00000641597	IMUP	Q9GZP8	106 aa		11.29	□□□□□ -0.6
PHGDH-223	ENST00000641597	C6orf48	Q9UBA6	75 aa		11.29	□□□□□ -0.6
PHGDH-223	ENST00000641597	WFDC9	Q8NEX5	89 aa		11.28	□□□□□ -0.6
PHGDH-223	ENST00000641597		Q6ZTC4	211 aa		11.27	□□□□□ -0.6
PHGDH-223	ENST00000641597	LINC00167	Q96N53	147 aa		11.27	□□□□□ -0.6
PHGDH-223	ENST00000641597	NBEAL1	Q6ZS30	2694 aa		11.26	□□□□□ -0.61
PHGDH-223	ENST00000641597	KPRP	Q5T749	579 aa	Predicted RBP	11.25	□□□□□ -0.61
PHGDH-223	ENST00000641597		M0R2N4	97 aa		11.25	□□□□□ -0.61
PHGDH-223	ENST00000641597	LINC00575	Q6W349	94 aa		11.25	□□□□□ -0.61
PHGDH-223	ENST00000641597		A0A0J9YWU9	116 aa		11.24	□□□□□ -0.61
PHGDH-223	ENST00000641597	TRBV10-3	A0A0K0K1G6	114 aa		11.24	□□□□□ -0.61
PHGDH-223	ENST00000641597	CCK	P06307	115 aa		11.24	□□□□□ -0.61
PHGDH-223	ENST00000641597	TMEM256-PLSCR3	K7ERE1	68 aa		11.22	□□□□□ -0.61
PHGDH-223	ENST00000641597	IGLV6-57	P01721	117 aa		11.22	□□□□□ -0.61
PHGDH-223	ENST00000641597	COL6A5	A8TX70	2615 aa		11.21	□□□□□ -0.61
PHGDH-223	ENST00000641597		Q6ZQY7	126 aa		11.21	□□□□□ -0.62
PHGDH-223	ENST00000641597	CYSTM1	Q9H1C7	97 aa		11.21	□□□□□ -0.62
PHGDH-223	ENST00000641597	CMYA5	Q8N3K9	4069 aa		11.2	□□□□□ -0.62
PHGDH-223	ENST00000641597	hADV29S1	A0JD25	119 aa		11.2	□□□□□ -0.62
PHGDH-223	ENST00000641597	ESRG	Q1W209	222 aa		11.2	□□□□□ -0.62
PHGDH-223	ENST00000641597	BAHCC1	Q9P281	2608 aa		11.2	□□□□□ -0.62
PHGDH-223	ENST00000641597	HIST1H4A	P62805	103 aa	Known RBP	11.2	□□□□□ -0.62
PHGDH-223	ENST00000641597		Q6JHZ5	121 aa		11.19	□□□□□ -0.62
PHGDH-223	ENST00000641597	C9orf153	Q5TBE3	101 aa		11.19	□□□□□ -0.62
PHGDH-223	ENST00000641597	KRTAP26-1	Q6PEX3	210 aa		11.19	□□□□□ -0.62
PHGDH-223	ENST00000641597		Q6ZRU5	148 aa		11.19	□□□□□ -0.62
PHGDH-223	ENST00000641597	C2orf48	Q96LS8	159 aa		11.18	□□□□□ -0.62
PHGDH-223	ENST00000641597	CAMK2N2	Q96S95	79 aa		11.18	□□□□□ -0.62
PHGDH-223	ENST00000641597	WIPF1	O43516	503 aa		11.18	□□□□□ -0.62
PHGDH-223	ENST00000641597	SMIM20	Q8N5G0	67 aa		11.18	□□□□□ -0.62
PHGDH-223	ENST00000641597	LAMTOR3	Q9UHA4	124 aa		11.18	□□□□□ -0.62
PHGDH-223	ENST00000641597		A0A1B0GX51	115 aa		11.17	□□□□□ -0.62
PHGDH-223	ENST00000641597	JMJD7-PLA2G4B	H0Y9G9	81 aa		11.17	□□□□□ -0.62
PHGDH-223	ENST00000641597	ZNF561-AS1	K7EIQ3	104 aa		11.17	□□□□□ -0.62
PHGDH-223	ENST00000641597	FAM19A1	Q7Z5A9	133 aa		11.17	□□□□□ -0.62
PHGDH-223	ENST00000641597	C3orf22	Q8N5N4	141 aa		11.17	□□□□□ -0.62
PHGDH-223	ENST00000641597	C15orf56	Q8N910	161 aa		11.17	□□□□□ -0.62
PHGDH-223	ENST00000641597	TRAV23DV6	A0A075B6W5	121 aa		11.16	□□□□□ -0.62
PHGDH-223	ENST00000641597	PRB2	P02812	416 aa	Predicted RBP	11.15	□□□□□ -0.62
PHGDH-223	ENST00000641597	GVQW2	A0A096LPI5	108 aa	Predicted RBP	11.13	□□□□□ -0.63
PHGDH-223	ENST00000641597	UQCRQ	O14949	82 aa		11.13	□□□□□ -0.63
PHGDH-223	ENST00000641597	ZNF73	O43830	326 aa	Predicted RBP	11.13	□□□□□ -0.63
PHGDH-223	ENST00000641597	RBM3	P98179	157 aa	Known RBP	11.13	□□□□□ -0.63
PHGDH-223	ENST00000641597		Q6ZQT0	140 aa		11.13	□□□□□ -0.63
PHGDH-223	ENST00000641597	KRTAP24-1	Q3LI83	254 aa		11.12	□□□□□ -0.63
PHGDH-223	ENST00000641597	IGKV2D-24	A0A075B6R9	120 aa		11.12	□□□□□ -0.63
PHGDH-223	ENST00000641597	USP17L23	D6RBM5	183 aa		11.12	□□□□□ -0.63
PHGDH-223	ENST00000641597	VPREB1	P12018	145 aa		11.12	□□□□□ -0.63
PHGDH-223	ENST00000641597	COX7C	P15954	63 aa		11.12	□□□□□ -0.63
PHGDH-223	ENST00000641597	DIRC1	Q969H9	104 aa		11.11	□□□□□ -0.63
PHGDH-223	ENST00000641597		Q6ZRP5	223 aa		11.11	□□□□□ -0.63
PHGDH-223	ENST00000641597	ATOX1	O00244	68 aa		11.09	□□□□□ -0.63
PHGDH-223	ENST00000641597	DEFB131B	A0A096LNP1	70 aa		11.09	□□□□□ -0.63
PHGDH-223	ENST00000641597	C1orf43	Q9BWL3	253 aa		11.07	□□□□□ -0.64
PHGDH-223	ENST00000641597	COX7B	P24311	80 aa		11.07	□□□□□ -0.64
PHGDH-223	ENST00000641597	LYST	Q99698	3801 aa		11.07	□□□□□ -0.64
PHGDH-223	ENST00000641597	CASC10	Q5T4H9	136 aa		11.06	□□□□□ -0.64
PHGDH-223	ENST00000641597	MGAM2	Q2M2H8	2515 aa		11.06	□□□□□ -0.64
PHGDH-223	ENST00000641597	NDUFC2-KCTD14	E9PQ53	114 aa		11.05	□□□□□ -0.64
PHGDH-223	ENST00000641597	EGFEM1P	Q0D2K5	195 aa		11.05	□□□□□ -0.64
PHGDH-223	ENST00000641597	C11orf45	Q8TAV5	145 aa		11.05	□□□□□ -0.64
PHGDH-223	ENST00000641597	UBL5	Q9BZL1	73 aa		11.05	□□□□□ -0.64
PHGDH-223	ENST00000641597	ELOF1	P60002	83 aa	Known RBP	11.05	□□□□□ -0.64
PHGDH-223	ENST00000641597	MUC7	Q8TAX7	377 aa		11.05	□□□□□ -0.64
PHGDH-223	ENST00000641597	HAMP	P81172	84 aa		11.04	□□□□□ -0.64
PHGDH-223	ENST00000641597	SCX	Q7RTU7	201 aa		11.04	□□□□□ -0.64
PHGDH-223	ENST00000641597	DSCR8	Q96T75	97 aa		11.04	□□□□□ -0.64
PHGDH-223	ENST00000641597		H3BNG1	76 aa		11.03	□□□□□ -0.64
PHGDH-223	ENST00000641597	SERTAD4-AS1	Q5TG53	156 aa		11.03	□□□□□ -0.64
PHGDH-223	ENST00000641597	UPK3B	Q9BT76	320 aa		11.03	□□□□□ -0.64
PHGDH-223	ENST00000641597	LOC110117498	A0A087WWA1	95 aa		11.02	□□□□□ -0.65
PHGDH-223	ENST00000641597		Q6ZVQ6	151 aa		11.02	□□□□□ -0.65
PHGDH-223	ENST00000641597	SERP2	Q8N6R1	65 aa		11.02	□□□□□ -0.65
PHGDH-223	ENST00000641597	STAB2	Q8WWQ8	2551 aa		11.01	□□□□□ -0.65
PHGDH-223	ENST00000641597	DNAH3	Q8TD57	4116 aa		11.01	□□□□□ -0.65
PHGDH-223	ENST00000641597	TENM2	Q9NT68	2774 aa		11.01	□□□□□ -0.65
PHGDH-223	ENST00000641597	COL7A1	Q02388	2944 aa		11.01	□□□□□ -0.65
PHGDH-223	ENST00000641597	FAM168B	A1KXE4	195 aa		11.01	□□□□□ -0.65
PHGDH-223	ENST00000641597		M0R378	163 aa		11.01	□□□□□ -0.65
PHGDH-223	ENST00000641597	LINC01547	P58512	204 aa	Predicted RBP	11.01	□□□□□ -0.65
PHGDH-223	ENST00000641597	LOC107984640	A0A0U1RRK4	108 aa		11	□□□□□ -0.65
PHGDH-223	ENST00000641597	GHRH	P01286	108 aa		11	□□□□□ -0.65
PHGDH-223	ENST00000641597	CRYGA	P11844	174 aa		11	□□□□□ -0.65
PHGDH-223	ENST00000641597	LINC01556	Q5JQF7	62 aa		11	□□□□□ -0.65
PHGDH-223	ENST00000641597	MRAP	Q8TCY5	172 aa		11	□□□□□ -0.65
PHGDH-223	ENST00000641597	SYCN	Q0VAF6	134 aa		11	□□□□□ -0.65

Retrieved 100 of 20,778 RNA–protein pairs in 56.3 ms