RNA–Protein interactions for RNA: ENST00000640640.1

SCARB2-223, Transcript of scavenger receptor class B member 2, human

TSL 5 BASIC

Gene SCARB2, Length 4,608 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SCARB2-223	ENST00000640640		Q8NAQ8	132 aa		12.11	□□□□□ -0.47
SCARB2-223	ENST00000640640	MRPL55	Q7Z7F7	128 aa	Known RBP	12.1	□□□□□ -0.47
SCARB2-223	ENST00000640640	AKAP13	Q12802	2813 aa		12.1	□□□□□ -0.47
SCARB2-223	ENST00000640640	PRO0461	Q9UI25	63 aa		12.1	□□□□□ -0.47
SCARB2-223	ENST00000640640	IGLV9-49	A0A0B4J1Y8	123 aa		12.1	□□□□□ -0.47
SCARB2-223	ENST00000640640	SPINK6	Q6UWN8	80 aa		12.1	□□□□□ -0.47
SCARB2-223	ENST00000640640	SNURF	Q9Y675	71 aa		12.1	□□□□□ -0.47
SCARB2-223	ENST00000640640		Q8N3U1	123 aa		12.09	□□□□□ -0.47
SCARB2-223	ENST00000640640	LINC00846	Q9NV44	126 aa		12.09	□□□□□ -0.47
SCARB2-223	ENST00000640640	CDIP1	Q9H305	208 aa		12.09	□□□□□ -0.47
SCARB2-223	ENST00000640640	SBSPON	Q8IVN8	264 aa		12.08	□□□□□ -0.48
SCARB2-223	ENST00000640640		H3BNG1	76 aa		12.08	□□□□□ -0.48
SCARB2-223	ENST00000640640	HRCT1	Q6UXD1	115 aa		12.08	□□□□□ -0.48
SCARB2-223	ENST00000640640	C10orf25	Q5T742	122 aa		12.07	□□□□□ -0.48
SCARB2-223	ENST00000640640	C6orf48	Q9UBA6	75 aa		12.07	□□□□□ -0.48
SCARB2-223	ENST00000640640	PRY	O14603	147 aa		12.06	□□□□□ -0.48
SCARB2-223	ENST00000640640	CSNK1G2-AS1	Q8NCQ2	148 aa		12.06	□□□□□ -0.48
SCARB2-223	ENST00000640640	NDUFC1	O43677	76 aa		12.05	□□□□□ -0.48
SCARB2-223	ENST00000640640	SZT2	Q5T011	3432 aa		12.04	□□□□□ -0.48
SCARB2-223	ENST00000640640	FAM218A	Q96MZ4	157 aa		12.04	□□□□□ -0.48
SCARB2-223	ENST00000640640	LITAF	Q99732	161 aa		12.04	□□□□□ -0.48
SCARB2-223	ENST00000640640	LAMA1	P25391	3075 aa		12.02	□□□□□ -0.49
SCARB2-223	ENST00000640640	C22orf24	Q9Y442	160 aa		12.01	□□□□□ -0.49
SCARB2-223	ENST00000640640		Q6ZVQ6	151 aa		12.01	□□□□□ -0.49
SCARB2-223	ENST00000640640	CHD6	Q8TD26	2715 aa		12	□□□□□ -0.49
SCARB2-223	ENST00000640640	TRAV7	A0A075B6U4	112 aa		12	□□□□□ -0.49
SCARB2-223	ENST00000640640	C19orf73	Q9NVV2	129 aa		11.99	□□□□□ -0.49
SCARB2-223	ENST00000640640	GIG44	P09565	113 aa	Predicted RBP	11.99	□□□□□ -0.49
SCARB2-223	ENST00000640640	NHLRC4	P0CG21	123 aa	Predicted RBP	11.98	□□□□□ -0.49
SCARB2-223	ENST00000640640	PRLH	P81277	87 aa		11.98	□□□□□ -0.49
SCARB2-223	ENST00000640640		Q9BRP9	147 aa		11.98	□□□□□ -0.49
SCARB2-223	ENST00000640640	FAM30A	Q9NZY2	134 aa		11.98	□□□□□ -0.49
SCARB2-223	ENST00000640640	TEP1	Q99973	2627 aa	Known RBP	11.97	□□□□□ -0.49
SCARB2-223	ENST00000640640	IGLV5-52	A0A0A0MRZ9	124 aa		11.97	□□□□□ -0.49
SCARB2-223	ENST00000640640		A0A087WSZ3	146 aa		11.96	□□□□□ -0.49
SCARB2-223	ENST00000640640	KRTAP1-3	Q8IUG1	177 aa		11.96	□□□□□ -0.49
SCARB2-223	ENST00000640640	MPLKIP	Q8TAP9	179 aa		11.96	□□□□□ -0.49
SCARB2-223	ENST00000640640	FRY	Q5TBA9	3013 aa		11.96	□□□□□ -0.5
SCARB2-223	ENST00000640640	PRR4	Q16378	134 aa		11.95	□□□□□ -0.5
SCARB2-223	ENST00000640640	TRBV7-7	A0A0K0K1E9	115 aa		11.94	□□□□□ -0.5
SCARB2-223	ENST00000640640	LINC00167	Q96N53	147 aa		11.94	□□□□□ -0.5
SCARB2-223	ENST00000640640	VCAN	P13611	3396 aa		11.94	□□□□□ -0.5
SCARB2-223	ENST00000640640	ATP5E	P56381	51 aa	Predicted RBP	11.93	□□□□□ -0.5
SCARB2-223	ENST00000640640	LINC01547	P58512	204 aa	Predicted RBP	11.93	□□□□□ -0.5
SCARB2-223	ENST00000640640	CELSR3	Q9NYQ7	3312 aa		11.93	□□□□□ -0.5
SCARB2-223	ENST00000640640	C1orf134	Q5TEV5	83 aa		11.93	□□□□□ -0.5
SCARB2-223	ENST00000640640	EIF4EBP3	O60516	100 aa	Predicted RBP	11.91	□□□□□ -0.5
SCARB2-223	ENST00000640640	MDFI	Q99750	246 aa		11.91	□□□□□ -0.5
SCARB2-223	ENST00000640640	SMCR5	Q8TEV8	140 aa		11.91	□□□□□ -0.5
SCARB2-223	ENST00000640640	KIAA0087	Q14695	138 aa		11.9	□□□□□ -0.5
SCARB2-223	ENST00000640640	SPATA3	Q8NHX4	192 aa		11.9	□□□□□ -0.5
SCARB2-223	ENST00000640640	BRK1	Q8WUW1	75 aa		11.9	□□□□□ -0.5
SCARB2-223	ENST00000640640	LINC00588	Q9Y4M8	146 aa		11.9	□□□□□ -0.5
SCARB2-223	ENST00000640640	KRTAP10-3	P60369	221 aa		11.9	□□□□□ -0.51
SCARB2-223	ENST00000640640	ZNF575	Q86XF7	245 aa		11.89	□□□□□ -0.51
SCARB2-223	ENST00000640640	CASC2	Q6XLA1	102 aa		11.88	□□□□□ -0.51
SCARB2-223	ENST00000640640	IGSF10	Q6WRI0	2623 aa		11.88	□□□□□ -0.51
SCARB2-223	ENST00000640640	ELOF1	P60002	83 aa	Known RBP	11.88	□□□□□ -0.51
SCARB2-223	ENST00000640640	TEX15	Q9BXT5	2789 aa		11.87	□□□□□ -0.51
SCARB2-223	ENST00000640640	CIRBP-AS1	Q8TBR5	109 aa		11.87	□□□□□ -0.51
SCARB2-223	ENST00000640640	DEFB116	Q30KQ4	102 aa		11.87	□□□□□ -0.51
SCARB2-223	ENST00000640640	KRTAP1-1	Q07627	177 aa		11.87	□□□□□ -0.51
SCARB2-223	ENST00000640640	TRBV7-6	A0A0J9YX20	115 aa		11.86	□□□□□ -0.51
SCARB2-223	ENST00000640640	LINC00208	Q96KT6	92 aa		11.86	□□□□□ -0.51
SCARB2-223	ENST00000640640	GVQW2	A0A096LPI5	108 aa	Predicted RBP	11.86	□□□□□ -0.51
SCARB2-223	ENST00000640640	CXCL6	P80162	114 aa		11.84	□□□□□ -0.51
SCARB2-223	ENST00000640640	LINC00612	Q8N6U2	182 aa		11.84	□□□□□ -0.51
SCARB2-223	ENST00000640640		Q8N9L7	120 aa		11.84	□□□□□ -0.51
SCARB2-223	ENST00000640640	DNAH10OS	P0CZ25	163 aa		11.83	□□□□□ -0.52
SCARB2-223	ENST00000640640		Q6ZRP5	223 aa		11.82	□□□□□ -0.52
SCARB2-223	ENST00000640640	IGHV6-1	A0A0B4J1U7	121 aa		11.8	□□□□□ -0.52
SCARB2-223	ENST00000640640	PRR34	Q9NV39	138 aa		11.8	□□□□□ -0.52
SCARB2-223	ENST00000640640	STAB1	Q9NY15	2570 aa		11.8	□□□□□ -0.52
SCARB2-223	ENST00000640640	UNC79	Q9P2D8	2635 aa		11.8	□□□□□ -0.52
SCARB2-223	ENST00000640640	VPREB1	P12018	145 aa		11.8	□□□□□ -0.52
SCARB2-223	ENST00000640640		Q6ZRX8	168 aa		11.8	□□□□□ -0.52
SCARB2-223	ENST00000640640	SEC61G	P60059	68 aa		11.8	□□□□□ -0.52
SCARB2-223	ENST00000640640	KRTAP10-11	P60412	298 aa		11.8	□□□□□ -0.52
SCARB2-223	ENST00000640640	DNAH14	Q0VDD8	3507 aa		11.79	□□□□□ -0.52
SCARB2-223	ENST00000640640		Q6ZQT0	140 aa		11.79	□□□□□ -0.52
SCARB2-223	ENST00000640640	TMEM254	Q8TBM7	123 aa		11.79	□□□□□ -0.52
SCARB2-223	ENST00000640640	IGLV6-57	P01721	117 aa		11.78	□□□□□ -0.52
SCARB2-223	ENST00000640640	NBEA	Q8NFP9	2946 aa		11.77	□□□□□ -0.52
SCARB2-223	ENST00000640640	NBDY	A0A0U1RRE5	68 aa		11.76	□□□□□ -0.53
SCARB2-223	ENST00000640640	COL6A5	A8TX70	2615 aa		11.76	□□□□□ -0.53
SCARB2-223	ENST00000640640	SMIM26	A0A096LP01	95 aa		11.75	□□□□□ -0.53
SCARB2-223	ENST00000640640		V9GYY9	64 aa		11.75	□□□□□ -0.53
SCARB2-223	ENST00000640640	FLNC	Q14315	2725 aa		11.75	□□□□□ -0.53
SCARB2-223	ENST00000640640	FRYL	O94915	3013 aa		11.75	□□□□□ -0.53
SCARB2-223	ENST00000640640	HCG22	E2RYF7	251 aa		11.75	□□□□□ -0.53
SCARB2-223	ENST00000640640	GCN1	Q92616	2671 aa	Known RBP	11.74	□□□□□ -0.53
SCARB2-223	ENST00000640640	LOC110117498	A0A087WWA1	95 aa		11.74	□□□□□ -0.53
SCARB2-223	ENST00000640640	C16orf90	A8MZG2	172 aa		11.74	□□□□□ -0.53
SCARB2-223	ENST00000640640	PHF5A	Q7RTV0	110 aa	Known RBP	11.74	□□□□□ -0.53
SCARB2-223	ENST00000640640	NOTCH1	P46531	2555 aa		11.73	□□□□□ -0.53
SCARB2-223	ENST00000640640		K7EIL1	84 aa		11.73	□□□□□ -0.53
SCARB2-223	ENST00000640640	SERP1	Q9Y6X1	66 aa		11.73	□□□□□ -0.53
SCARB2-223	ENST00000640640	SPTSSB	Q8NFR3	76 aa		11.72	□□□□□ -0.53
SCARB2-223	ENST00000640640		Q8NBF4	154 aa		11.72	□□□□□ -0.53
SCARB2-223	ENST00000640640	ST20-AS1	Q8NBB2	130 aa		11.71	□□□□□ -0.53

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