RNA–Protein interactions for RNA: ENST00000639659.1

SYNE2-228, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best) BASIC

Gene SYNE2, Length 1,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-228ENST00000639659 ZNF706Q9Y5V0 76 aaPredicted RBP8.48□□□□□ -1.05
SYNE2-228ENST00000639659 FSIP2Q5CZC0 6907 aa8.47□□□□□ -1.05
SYNE2-228ENST00000639659 SMCO4Q9NRQ5 59 aa8.46□□□□□ -1.06
SYNE2-228ENST00000639659 CLLU1Q5K131 121 aa8.45□□□□□ -1.06
SYNE2-228ENST00000639659 FA2HQ7L5A8 372 aa8.45□□□□□ -1.06
SYNE2-228ENST00000639659 IGLV5-39A0A0G2JS06 123 aa8.44□□□□□ -1.06
SYNE2-228ENST00000639659 A0A0U1RRA0 63 aa8.44□□□□□ -1.06
SYNE2-228ENST00000639659 LINC01549A6NIU2 74 aa8.44□□□□□ -1.06
SYNE2-228ENST00000639659 ZNF22P17026 224 aaPredicted RBP8.44□□□□□ -1.06
SYNE2-228ENST00000639659 IFITM2Q01629 132 aa8.44□□□□□ -1.06
SYNE2-228ENST00000639659 NDUFA12Q9UI09 145 aa8.44□□□□□ -1.06
SYNE2-228ENST00000639659 IGLC3P0DOY3 106 aa8.43□□□□□ -1.06
SYNE2-228ENST00000639659 LINC00158P58513 81 aa8.43□□□□□ -1.06
SYNE2-228ENST00000639659 COX17Q14061 63 aa8.43□□□□□ -1.06
SYNE2-228ENST00000639659 NCR3O14931 201 aa8.41□□□□□ -1.06
SYNE2-228ENST00000639659 SPINK1P00995 79 aa8.41□□□□□ -1.06
SYNE2-228ENST00000639659 IGLV9-49A0A0B4J1Y8 123 aa8.4□□□□□ -1.06
SYNE2-228ENST00000639659 MOBPQ13875 183 aa8.4□□□□□ -1.06
SYNE2-228ENST00000639659 TMEM170BQ5T4T1 132 aa8.4□□□□□ -1.06
SYNE2-228ENST00000639659 SMCR5Q8TEV8 140 aa8.4□□□□□ -1.06
SYNE2-228ENST00000639659 ETDCA0A1B0GVM5 59 aa8.39□□□□□ -1.07
SYNE2-228ENST00000639659 LINC01546A6NGU7 62 aa8.39□□□□□ -1.07
SYNE2-228ENST00000639659 GAGE2AQ6NT46 116 aa8.39□□□□□ -1.07
SYNE2-228ENST00000639659 PRYO14603 147 aa8.38□□□□□ -1.07
SYNE2-228ENST00000639659 ATP6V1G1O75348 118 aa8.38□□□□□ -1.07
SYNE2-228ENST00000639659 C11orf86A6NJI1 115 aa8.37□□□□□ -1.07
SYNE2-228ENST00000639659 FAM19A2Q8N3H0 131 aa8.37□□□□□ -1.07
SYNE2-228ENST00000639659 FABP9Q0Z7S8 132 aa8.36□□□□□ -1.07
SYNE2-228ENST00000639659 PMCHL1Q16048 86 aa8.36□□□□□ -1.07
SYNE2-228ENST00000639659 SFTA2Q6UW10 78 aa8.36□□□□□ -1.07
SYNE2-228ENST00000639659 UQCC3Q6UW78 93 aa8.36□□□□□ -1.07
SYNE2-228ENST00000639659 BOD1L2Q8IYS8 172 aa8.36□□□□□ -1.07
SYNE2-228ENST00000639659 S100PP25815 95 aa8.35□□□□□ -1.07
SYNE2-228ENST00000639659 TRAV9-1A0A075B6T8 112 aa8.34□□□□□ -1.07
SYNE2-228ENST00000639659 MEIG1Q5JSS6 88 aa8.34□□□□□ -1.07
SYNE2-228ENST00000639659 BAGE3Q86Y29 109 aa8.34□□□□□ -1.07
SYNE2-228ENST00000639659 Q8N377 158 aa8.34□□□□□ -1.07
SYNE2-228ENST00000639659 A0A096LNJ9 63 aa8.33□□□□□ -1.08
SYNE2-228ENST00000639659 TMEM218A2RU14 115 aa8.33□□□□□ -1.08
SYNE2-228ENST00000639659 SMIM13P0DJ93 91 aa8.33□□□□□ -1.08
SYNE2-228ENST00000639659 SLC25A20O43772 301 aa8.32□□□□□ -1.08
SYNE2-228ENST00000639659 HBDP02042 147 aa8.32□□□□□ -1.08
SYNE2-228ENST00000639659 LINC00483Q53H64 154 aa8.32□□□□□ -1.08
SYNE2-228ENST00000639659 XP32Q5T750 250 aa8.32□□□□□ -1.08
SYNE2-228ENST00000639659 COMMD7Q86VX2 200 aa8.32□□□□□ -1.08
SYNE2-228ENST00000639659 TRBV10-3A0A0K0K1G6 114 aa8.31□□□□□ -1.08
SYNE2-228ENST00000639659 S100A12P80511 92 aa8.31□□□□□ -1.08
SYNE2-228ENST00000639659 C9orf153Q5TBE3 101 aa8.31□□□□□ -1.08
SYNE2-228ENST00000639659 ERC2-IT1O76042 136 aa8.3□□□□□ -1.08
SYNE2-228ENST00000639659 SPRR1AP35321 89 aa8.3□□□□□ -1.08
SYNE2-228ENST00000639659 MIR7-3HGQ8N6C7 128 aa8.3□□□□□ -1.08
SYNE2-228ENST00000639659 SEC11CQ9BY50 192 aa8.3□□□□□ -1.08
SYNE2-228ENST00000639659 KCNQ1DNQ9H478 68 aa8.3□□□□□ -1.08
SYNE2-228ENST00000639659 CHTOPQ9Y3Y2 248 aaKnown RBP8.3□□□□□ -1.08
SYNE2-228ENST00000639659 LCE2CQ5TA81 110 aa8.29□□□□□ -1.08
SYNE2-228ENST00000639659 KRTAP4-16G5E9R7 235 aaPredicted RBP8.28□□□□□ -1.08
SYNE2-228ENST00000639659 RPS29P62273 56 aaKnown RBP8.28□□□□□ -1.08
SYNE2-228ENST00000639659 SSBP3-AS1Q7Z2R9 100 aa8.28□□□□□ -1.08
SYNE2-228ENST00000639659 URB1-AS1Q96HZ7 61 aa8.28□□□□□ -1.08
SYNE2-228ENST00000639659 B5MCH6 92 aa8.27□□□□□ -1.09
SYNE2-228ENST00000639659 LINC00614P0C842 121 aa8.27□□□□□ -1.09
SYNE2-228ENST00000639659 COX19Q49B96 90 aa8.27□□□□□ -1.09
SYNE2-228ENST00000639659 TMEM223A0PJW6 202 aa8.26□□□□□ -1.09
SYNE2-228ENST00000639659 MT1HP80294 61 aa8.26□□□□□ -1.09
SYNE2-228ENST00000639659 PCOTHQ58A44 107 aa8.26□□□□□ -1.09
SYNE2-228ENST00000639659 C18orf32Q8TCD1 76 aa8.26□□□□□ -1.09
SYNE2-228ENST00000639659 IGLV8-61A0A075B6I0 122 aa8.25□□□□□ -1.09
SYNE2-228ENST00000639659 C9orf92A6NGG3 77 aa8.24□□□□□ -1.09
SYNE2-228ENST00000639659 CFC1BP0CG36 223 aa8.24□□□□□ -1.09
SYNE2-228ENST00000639659 DDTP30046 118 aa8.24□□□□□ -1.09
SYNE2-228ENST00000639659 C10orf91Q5T1B1 145 aa8.24□□□□□ -1.09
SYNE2-228ENST00000639659 Q9BRP9 147 aa8.24□□□□□ -1.09
SYNE2-228ENST00000639659 TRAPPC1Q9Y5R8 145 aa8.23□□□□□ -1.09
SYNE2-228ENST00000639659 HERV-K104P63124 156 aa8.22□□□□□ -1.09
SYNE2-228ENST00000639659 KRTAP19-2Q3LHN2 52 aa8.22□□□□□ -1.09
SYNE2-228ENST00000639659 MAP1LC3CQ9BXW4 147 aa8.22□□□□□ -1.09
SYNE2-228ENST00000639659 NDUFA5Q16718 116 aa8.21□□□□□ -1.1
SYNE2-228ENST00000639659 HRCT1Q6UXD1 115 aa8.21□□□□□ -1.1
SYNE2-228ENST00000639659 Q6ZRX8 168 aa8.21□□□□□ -1.1
SYNE2-228ENST00000639659 RPS10P5Q9NQ39 176 aa8.21□□□□□ -1.1
SYNE2-228ENST00000639659 MYMXA0A1B0GTQ4 84 aa8.19□□□□□ -1.1
SYNE2-228ENST00000639659 LINC00587B1AMM8 73 aa8.19□□□□□ -1.1
SYNE2-228ENST00000639659 M0R2T5 61 aa8.19□□□□□ -1.1
SYNE2-228ENST00000639659 RHEBQ15382 184 aa8.19□□□□□ -1.1
SYNE2-228ENST00000639659 S100A7L2Q5SY68 101 aa8.19□□□□□ -1.1
SYNE2-228ENST00000639659 H0Y8G0 127 aa8.18□□□□□ -1.1
SYNE2-228ENST00000639659 APOC3P02656 99 aa8.18□□□□□ -1.1
SYNE2-228ENST00000639659 ST20-AS1Q8NBB2 130 aa8.18□□□□□ -1.1
SYNE2-228ENST00000639659 IFI27L1Q96BM0 104 aa8.18□□□□□ -1.1
SYNE2-228ENST00000639659 MIEN1Q9BRT3 115 aa8.17□□□□□ -1.1
SYNE2-228ENST00000639659 TRAV12-1A0A0B4J245 112 aa8.16□□□□□ -1.1
SYNE2-228ENST00000639659 SNAPINO95295 136 aa8.16□□□□□ -1.1
SYNE2-228ENST00000639659 KRTAP10-6P60371 365 aaPredicted RBP8.16□□□□□ -1.1
SYNE2-228ENST00000639659 JOSD1Q15040 202 aaPredicted RBP8.16□□□□□ -1.1
SYNE2-228ENST00000639659 SVBPQ8N300 66 aa8.16□□□□□ -1.1
SYNE2-228ENST00000639659 LIMD2Q9BT23 127 aa8.16□□□□□ -1.1
SYNE2-228ENST00000639659 TRAV23DV6A0A075B6W5 121 aa8.15□□□□□ -1.1
SYNE2-228ENST00000639659 TRBV10-2A0A0K0K1G8 114 aa8.15□□□□□ -1.1
SYNE2-228ENST00000639659 SPANXB1Q9NS25 103 aaPredicted RBP8.15□□□□□ -1.1
SYNE2-228ENST00000639659 LORP23490 312 aaPredicted RBP8.14□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 119 ms