RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 LINC00304Q8N9R0 145 aa4.29□□□□□ -1.72
SCN1A-217ENST00000637988 CHD8Q9HCK8 2581 aa4.29□□□□□ -1.72
SCN1A-217ENST00000637988 C6orf48Q9UBA6 75 aa4.28□□□□□ -1.72
SCN1A-217ENST00000637988 TRAV22A0A0B4J277 110 aa4.28□□□□□ -1.72
SCN1A-217ENST00000637988 TRBV7-7A0A0K0K1E9 115 aa4.28□□□□□ -1.72
SCN1A-217ENST00000637988 EPM2AB3EWF7 344 aa4.28□□□□□ -1.72
SCN1A-217ENST00000637988 BCE1O60756 84 aa4.27□□□□□ -1.73
SCN1A-217ENST00000637988 LINC00694P0DN24 101 aa4.27□□□□□ -1.73
SCN1A-217ENST00000637988 A0A1B0GW54 56 aa4.27□□□□□ -1.73
SCN1A-217ENST00000637988 MRPS12O15235 138 aaKnown RBP4.27□□□□□ -1.73
SCN1A-217ENST00000637988 MAPKAPK5-AS1Q8N8E1 139 aa4.27□□□□□ -1.73
SCN1A-217ENST00000637988 IGIPA6NJ69 53 aa4.27□□□□□ -1.73
SCN1A-217ENST00000637988 PMAIP1Q13794 54 aa4.27□□□□□ -1.73
SCN1A-217ENST00000637988 PHF5AQ7RTV0 110 aaKnown RBP4.27□□□□□ -1.73
SCN1A-217ENST00000637988 LINC00167Q96N53 147 aa4.26□□□□□ -1.73
SCN1A-217ENST00000637988 A0A087WYN8 130 aa4.26□□□□□ -1.73
SCN1A-217ENST00000637988 COX7CP15954 63 aa4.26□□□□□ -1.73
SCN1A-217ENST00000637988 C8orf87E5RJ46 101 aa4.26□□□□□ -1.73
SCN1A-217ENST00000637988 CXCL6P80162 114 aa4.26□□□□□ -1.73
SCN1A-217ENST00000637988 C11orf21Q9P2W6 132 aa4.25□□□□□ -1.73
SCN1A-217ENST00000637988 M0R2T5 61 aa4.25□□□□□ -1.73
SCN1A-217ENST00000637988 LINC00588Q9Y4M8 146 aa4.25□□□□□ -1.73
SCN1A-217ENST00000637988 AMELXQ99217 191 aa4.25□□□□□ -1.73
SCN1A-217ENST00000637988 SMIM26A0A096LP01 95 aa4.24□□□□□ -1.73
SCN1A-217ENST00000637988 Q8N3U1 123 aa4.24□□□□□ -1.73
SCN1A-217ENST00000637988 DNAH10OSP0CZ25 163 aa4.23□□□□□ -1.73
SCN1A-217ENST00000637988 CR1P17927 2039 aa4.23□□□□□ -1.73
SCN1A-217ENST00000637988 USP24Q9UPU5 2620 aa4.22□□□□□ -1.73
SCN1A-217ENST00000637988 IGLV5-37A0A075B6J1 123 aa4.22□□□□□ -1.73
SCN1A-217ENST00000637988 A0A1W2PPR1 153 aa4.22□□□□□ -1.73
SCN1A-217ENST00000637988 GVQW2A0A096LPI5 108 aaPredicted RBP4.22□□□□□ -1.73
SCN1A-217ENST00000637988 Q6ZRX8 168 aa4.21□□□□□ -1.74
SCN1A-217ENST00000637988 H3BPC8 53 aa4.21□□□□□ -1.74
SCN1A-217ENST00000637988 A8MTW9 85 aa4.21□□□□□ -1.74
SCN1A-217ENST00000637988 SERTAD4-AS1Q5TG53 156 aa4.21□□□□□ -1.74
SCN1A-217ENST00000637988 SPINT4Q6UDR6 99 aa4.2□□□□□ -1.74
SCN1A-217ENST00000637988 PSPHP1O15172 72 aa4.2□□□□□ -1.74
SCN1A-217ENST00000637988 C1orf195Q5TG92 126 aa4.2□□□□□ -1.74
SCN1A-217ENST00000637988 Q8NAQ8 132 aa4.2□□□□□ -1.74
SCN1A-217ENST00000637988 C9orf163Q8N9P6 203 aa4.2□□□□□ -1.74
SCN1A-217ENST00000637988 Q6ZPA2 131 aa4.2□□□□□ -1.74
SCN1A-217ENST00000637988 TM2D3Q9BRN9 247 aa4.2□□□□□ -1.74
SCN1A-217ENST00000637988 LINC00476Q8WZB0 136 aa4.19□□□□□ -1.74
SCN1A-217ENST00000637988 C9orf92A6NGG3 77 aa4.19□□□□□ -1.74
SCN1A-217ENST00000637988 SMR3BP02814 79 aaPredicted RBP4.19□□□□□ -1.74
SCN1A-217ENST00000637988 ST20-AS1Q8NBB2 130 aa4.19□□□□□ -1.74
SCN1A-217ENST00000637988 CRIPTQ9P021 101 aa4.19□□□□□ -1.74
SCN1A-217ENST00000637988 LOC101927531A0A1B0GV80 90 aa4.19□□□□□ -1.74
SCN1A-217ENST00000637988 C11orf72Q8NBR9 251 aa4.19□□□□□ -1.74
SCN1A-217ENST00000637988 K7EIL1 84 aa4.19□□□□□ -1.74
SCN1A-217ENST00000637988 APLNQ9ULZ1 77 aa4.19□□□□□ -1.74
SCN1A-217ENST00000637988 USP9YO00507 2555 aaPredicted RBP4.18□□□□□ -1.74
SCN1A-217ENST00000637988 ELOF1P60002 83 aaKnown RBP4.18□□□□□ -1.74
SCN1A-217ENST00000637988 TMEM254Q8TBM7 123 aa4.18□□□□□ -1.74
SCN1A-217ENST00000637988 Q9UF83 564 aa4.18□□□□□ -1.74
SCN1A-217ENST00000637988 ZNF861PO60384 105 aa4.17□□□□□ -1.74
SCN1A-217ENST00000637988 SOSTDC1Q6X4U4 206 aa4.17□□□□□ -1.74
SCN1A-217ENST00000637988 SMIM29Q86T20 159 aa4.17□□□□□ -1.74
SCN1A-217ENST00000637988 ADAMTSL4-AS1Q5T5F5 129 aa4.17□□□□□ -1.74
SCN1A-217ENST00000637988 SSBP3-AS1Q7Z2R9 100 aa4.17□□□□□ -1.74
SCN1A-217ENST00000637988 COX8CQ7Z4L0 72 aa4.17□□□□□ -1.74
SCN1A-217ENST00000637988 Q6ZSA8 131 aa4.17□□□□□ -1.74
SCN1A-217ENST00000637988 OBSCN-AS1Q96MR7 158 aa4.17□□□□□ -1.74
SCN1A-217ENST00000637988 IGLV8-61A0A075B6I0 122 aa4.16□□□□□ -1.74
SCN1A-217ENST00000637988 LINC00528Q8N1L1 170 aa4.16□□□□□ -1.74
SCN1A-217ENST00000637988 GAS8-AS1O95177 125 aa4.16□□□□□ -1.74
SCN1A-217ENST00000637988 CRIP3Q6Q6R5 217 aa4.16□□□□□ -1.74
SCN1A-217ENST00000637988 FAM19A4Q96LR4 140 aa4.16□□□□□ -1.74
SCN1A-217ENST00000637988 BPTFQ12830 3046 aa4.16□□□□□ -1.74
SCN1A-217ENST00000637988 A0A087WTM6 91 aa4.15□□□□□ -1.74
SCN1A-217ENST00000637988 IGHV3OR16-9A0A0B4J2B5 98 aa4.15□□□□□ -1.75
SCN1A-217ENST00000637988 A8MWP4 228 aa4.15□□□□□ -1.75
SCN1A-217ENST00000637988 C2orf91Q6ZV80 131 aa4.15□□□□□ -1.75
SCN1A-217ENST00000637988 TRBV7-4A0A0J9YYF1 115 aa4.14□□□□□ -1.75
SCN1A-217ENST00000637988 YPEL4Q96NS1 127 aa4.14□□□□□ -1.75
SCN1A-217ENST00000637988 MRPL34Q9BQ48 92 aaKnown RBP4.14□□□□□ -1.75
SCN1A-217ENST00000637988 KRTAP10-11P60412 298 aa4.14□□□□□ -1.75
SCN1A-217ENST00000637988 PSORS1C2Q9UIG4 136 aa4.13□□□□□ -1.75
SCN1A-217ENST00000637988 LINC01554Q52M75 96 aa4.13□□□□□ -1.75
SCN1A-217ENST00000637988 TSPEAR-AS2P59090 65 aa4.12□□□□□ -1.75
SCN1A-217ENST00000637988 IGLV5-39A0A0G2JS06 123 aa4.12□□□□□ -1.75
SCN1A-217ENST00000637988 HRES1P13985 223 aa4.11□□□□□ -1.75
SCN1A-217ENST00000637988 EPG5Q9HCE0 2579 aa4.11□□□□□ -1.75
SCN1A-217ENST00000637988 C10orf142B7Z368 130 aa4.11□□□□□ -1.75
SCN1A-217ENST00000637988 IGLV6-57P01721 117 aa4.11□□□□□ -1.75
SCN1A-217ENST00000637988 IGLV7-43P04211 117 aa4.11□□□□□ -1.75
SCN1A-217ENST00000637988 A0A087WVE0 104 aa4.11□□□□□ -1.75
SCN1A-217ENST00000637988 LINC00483Q53H64 154 aa4.11□□□□□ -1.75
SCN1A-217ENST00000637988 DSCR10P59022 87 aa4.11□□□□□ -1.75
SCN1A-217ENST00000637988 LINC01600Q96MT4 127 aa4.11□□□□□ -1.75
SCN1A-217ENST00000637988 FAM168BA1KXE4 195 aa4.1□□□□□ -1.75
SCN1A-217ENST00000637988 CCDC179H3BU77 68 aa4.1□□□□□ -1.75
SCN1A-217ENST00000637988 ZNF575Q86XF7 245 aa4.1□□□□□ -1.75
SCN1A-217ENST00000637988 IGLV1-50A0A075B6I6 118 aa4.1□□□□□ -1.75
SCN1A-217ENST00000637988 LOC110117498A0A087WWA1 95 aa4.1□□□□□ -1.75
SCN1A-217ENST00000637988 CSNK1G2-AS1Q8NCQ2 148 aa4.1□□□□□ -1.75
SCN1A-217ENST00000637988 C19orf73Q9NVV2 129 aa4.1□□□□□ -1.75
SCN1A-217ENST00000637988 CASC10Q5T4H9 136 aa4.09□□□□□ -1.75
SCN1A-217ENST00000637988 IGLV7-46A0A075B6I9 117 aa4.09□□□□□ -1.75
SCN1A-217ENST00000637988 CEP295Q9C0D2 2601 aa4.09□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms