RNA–Protein interactions for RNA: ENST00000637184.1

CLN3-258, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,753 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-258ENST00000637184 CFC1P0CG37 223 aa12.28□□□□□ -0.44
CLN3-258ENST00000637184 COL5A1-AS1Q5SY13 56 aa12.28□□□□□ -0.44
CLN3-258ENST00000637184 C9orf163Q8N9P6 203 aa12.28□□□□□ -0.44
CLN3-258ENST00000637184 K7ERJ3 54 aa12.27□□□□□ -0.45
CLN3-258ENST00000637184 A0A1B0GWB2 263 aa12.26□□□□□ -0.45
CLN3-258ENST00000637184 GAGE2BQ13066 116 aa12.26□□□□□ -0.45
CLN3-258ENST00000637184 RAB37Q96AX2 223 aa12.26□□□□□ -0.45
CLN3-258ENST00000637184 A0A0B4J2C4 111 aa12.25□□□□□ -0.45
CLN3-258ENST00000637184 PKIGQ9Y2B9 76 aa12.25□□□□□ -0.45
CLN3-258ENST00000637184 NDUFC2O95298 119 aa12.25□□□□□ -0.45
CLN3-258ENST00000637184 LBHQ53QV2 105 aaPredicted RBP12.25□□□□□ -0.45
CLN3-258ENST00000637184 C9orf129Q5T035 196 aaKnown RBP12.23□□□□□ -0.45
CLN3-258ENST00000637184 LINC01620Q4KN68 170 aa12.23□□□□□ -0.45
CLN3-258ENST00000637184 PRO1854Q9UHT4 67 aa12.23□□□□□ -0.45
CLN3-258ENST00000637184 KMT2CQ8NEZ4 4911 aaKnown RBP12.22□□□□□ -0.45
CLN3-258ENST00000637184 IGLV5-52A0A0A0MRZ9 124 aa12.22□□□□□ -0.45
CLN3-258ENST00000637184 C16orf90A8MZG2 172 aa12.22□□□□□ -0.45
CLN3-258ENST00000637184 Q8NDZ9 215 aa12.22□□□□□ -0.45
CLN3-258ENST00000637184 IGKV2-28A0A075B6P5 120 aa12.21□□□□□ -0.45
CLN3-258ENST00000637184 IGKV2D-28P01615 120 aa12.21□□□□□ -0.45
CLN3-258ENST00000637184 FUSP35637 526 aaKnown RBP eCLIP12.21□□□□□ -0.45
CLN3-258ENST00000637184 RYR2Q92736 4967 aa12.21□□□□□ -0.45
CLN3-258ENST00000637184 A0A096LNI7 61 aa12.2□□□□□ -0.46
CLN3-258ENST00000637184 PRR3P79522 188 aaKnown RBP12.2□□□□□ -0.46
CLN3-258ENST00000637184 SDIM1Q6ZPB5 146 aa12.2□□□□□ -0.46
CLN3-258ENST00000637184 HECTD4Q9Y4D8 3996 aa12.2□□□□□ -0.46
CLN3-258ENST00000637184 IGKV2-24A0A0C4DH68 120 aa12.2□□□□□ -0.46
CLN3-258ENST00000637184 TRAV13-2A0A0B4J235 113 aa12.19□□□□□ -0.46
CLN3-258ENST00000637184 TAX1BP3O14907 124 aa12.19□□□□□ -0.46
CLN3-258ENST00000637184 NCR3O14931 201 aa12.18□□□□□ -0.46
CLN3-258ENST00000637184 VPREB1P12018 145 aa12.18□□□□□ -0.46
CLN3-258ENST00000637184 LINC00336Q6ZUF6 198 aa12.18□□□□□ -0.46
CLN3-258ENST00000637184 LINC00337Q8N6G1 96 aa12.18□□□□□ -0.46
CLN3-258ENST00000637184 H7C2G1 150 aa12.17□□□□□ -0.46
CLN3-258ENST00000637184 RPL13AP40429 203 aaKnown RBP12.17□□□□□ -0.46
CLN3-258ENST00000637184 PGPEP1Q9NXJ5 209 aa12.17□□□□□ -0.46
CLN3-258ENST00000637184 PLA2G2DQ9UNK4 145 aa12.17□□□□□ -0.46
CLN3-258ENST00000637184 FAT2Q9NYQ8 4349 aa12.17□□□□□ -0.46
CLN3-258ENST00000637184 OR13C6PQ8NH95 151 aa12.16□□□□□ -0.46
CLN3-258ENST00000637184 TRBV10-2A0A0K0K1G8 114 aa12.15□□□□□ -0.46
CLN3-258ENST00000637184 KRTAP10-2P60368 255 aa12.15□□□□□ -0.46
CLN3-258ENST00000637184 SERTAD4-AS1Q5TG53 156 aa12.15□□□□□ -0.46
CLN3-258ENST00000637184 LINC00474Q9P2X8 69 aa12.15□□□□□ -0.46
CLN3-258ENST00000637184 CHTF8P0CG12 524 aa12.15□□□□□ -0.46
CLN3-258ENST00000637184 FAM168BA1KXE4 195 aa12.14□□□□□ -0.47
CLN3-258ENST00000637184 TSPAN13O95857 204 aa12.14□□□□□ -0.47
CLN3-258ENST00000637184 Q1RN00 199 aa12.14□□□□□ -0.47
CLN3-258ENST00000637184 NKAPP1Q8N9T2 125 aa12.14□□□□□ -0.47
CLN3-258ENST00000637184 DNAH11Q96DT5 4516 aa12.14□□□□□ -0.47
CLN3-258ENST00000637184 C9orf118A6NHY6 69 aa12.13□□□□□ -0.47
CLN3-258ENST00000637184 S100A7L2Q5SY68 101 aa12.13□□□□□ -0.47
CLN3-258ENST00000637184 M0R378 163 aa12.13□□□□□ -0.47
CLN3-258ENST00000637184 NAA38Q9BRA0 125 aaKnown RBP12.13□□□□□ -0.47
CLN3-258ENST00000637184 FAM19A5Q7Z5A7 132 aaPredicted RBP12.12□□□□□ -0.47
CLN3-258ENST00000637184 TMEM126AQ9H061 195 aa12.12□□□□□ -0.47
CLN3-258ENST00000637184 H3BUT2 72 aa12.11□□□□□ -0.47
CLN3-258ENST00000637184 IGLV5-37A0A075B6J1 123 aa12.1□□□□□ -0.47
CLN3-258ENST00000637184 KRTAP7-1Q8IUC3 87 aa12.1□□□□□ -0.47
CLN3-258ENST00000637184 A0A1W2PNN7 141 aa12.09□□□□□ -0.47
CLN3-258ENST00000637184 DPH3Q96FX2 82 aa12.09□□□□□ -0.47
CLN3-258ENST00000637184 IGLV6-57P01721 117 aa12.08□□□□□ -0.48
CLN3-258ENST00000637184 PSMB2P49721 201 aa12.08□□□□□ -0.48
CLN3-258ENST00000637184 SPACA4Q8TDM5 124 aa12.08□□□□□ -0.48
CLN3-258ENST00000637184 C22orf24Q9Y442 160 aa12.08□□□□□ -0.48
CLN3-258ENST00000637184 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP12.08□□□□□ -0.48
CLN3-258ENST00000637184 PKD1P98161 4303 aa12.08□□□□□ -0.48
CLN3-258ENST00000637184 PANO1I0J062 215 aa12.07□□□□□ -0.48
CLN3-258ENST00000637184 TRBV10-3A0A0K0K1G6 114 aa12.07□□□□□ -0.48
CLN3-258ENST00000637184 GAGE10A6NGK3 116 aa12.06□□□□□ -0.48
CLN3-258ENST00000637184 MRPL55Q7Z7F7 128 aaKnown RBP12.06□□□□□ -0.48
CLN3-258ENST00000637184 SMIM11BQ8TCY0 68 aa12.06□□□□□ -0.48
CLN3-258ENST00000637184 C7orf33Q8WU49 177 aa12.06□□□□□ -0.48
CLN3-258ENST00000637184 DNAH5Q8TE73 4624 aa12.05□□□□□ -0.48
CLN3-258ENST00000637184 A0A1W2PPM0 123 aa12.05□□□□□ -0.48
CLN3-258ENST00000637184 M0QXV9 152 aa12.05□□□□□ -0.48
CLN3-258ENST00000637184 RPL28P46779 137 aaKnown RBP12.05□□□□□ -0.48
CLN3-258ENST00000637184 TRIAP1O43715 76 aa12.04□□□□□ -0.48
CLN3-258ENST00000637184 LINC00167Q96N53 147 aa12.03□□□□□ -0.48
CLN3-258ENST00000637184 SCGB1C2P0DMR2 95 aa12.02□□□□□ -0.48
CLN3-258ENST00000637184 FABP2P12104 132 aa12.02□□□□□ -0.48
CLN3-258ENST00000637184 CBY1Q9Y3M2 126 aa12.02□□□□□ -0.48
CLN3-258ENST00000637184 A0A1B0GV90 55 aa12.02□□□□□ -0.49
CLN3-258ENST00000637184 COX6CP09669 75 aa12.02□□□□□ -0.49
CLN3-258ENST00000637184 TRAV23DV6A0A075B6W5 121 aa12.01□□□□□ -0.49
CLN3-258ENST00000637184 A0A087WYN8 130 aa12.01□□□□□ -0.49
CLN3-258ENST00000637184 A0A1B0GVY2 172 aa12.01□□□□□ -0.49
CLN3-258ENST00000637184 RPL37AP8A6NKH3 93 aa12□□□□□ -0.49
CLN3-258ENST00000637184 LYRM7Q5U5X0 104 aa12□□□□□ -0.49
CLN3-258ENST00000637184 IGLV1-50A0A075B6I6 118 aa11.99□□□□□ -0.49
CLN3-258ENST00000637184 KRTAP10-1P60331 282 aa11.99□□□□□ -0.49
CLN3-258ENST00000637184 VAMP3Q15836 100 aa11.99□□□□□ -0.49
CLN3-258ENST00000637184 RYR3Q15413 4870 aa11.99□□□□□ -0.49
CLN3-258ENST00000637184 PHF5AQ7RTV0 110 aaKnown RBP11.98□□□□□ -0.49
CLN3-258ENST00000637184 EPM2AB3EWF7 344 aa11.97□□□□□ -0.49
CLN3-258ENST00000637184 C6orf99Q4VX62 202 aa11.97□□□□□ -0.49
CLN3-258ENST00000637184 KCNQ1DNQ9H478 68 aa11.97□□□□□ -0.49
CLN3-258ENST00000637184 PLAC8Q9NZF1 115 aa11.97□□□□□ -0.49
CLN3-258ENST00000637184 ZNF73O43830 326 aaPredicted RBP11.96□□□□□ -0.49
CLN3-258ENST00000637184 SPCS1Q9Y6A9 102 aa11.96□□□□□ -0.49
CLN3-258ENST00000637184 DIRC1Q969H9 104 aa11.95□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 58.5 ms