RNA–Protein interactions for RNA: ENST00000637050.1

CLN3-254, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-254ENST00000637050 CARD19Q96LW7 228 aa12.03□□□□□ -0.48
CLN3-254ENST00000637050 C14orf177Q52M58 125 aa12.02□□□□□ -0.49
CLN3-254ENST00000637050 H3BUT2 72 aa12.01□□□□□ -0.49
CLN3-254ENST00000637050 SND1-IT1Q9HBX3 110 aa12.01□□□□□ -0.49
CLN3-254ENST00000637050 A0A0B4J2C4 111 aa12□□□□□ -0.49
CLN3-254ENST00000637050 F8W1H4 67 aa12□□□□□ -0.49
CLN3-254ENST00000637050 C1orf134Q5TEV5 83 aa11.99□□□□□ -0.49
CLN3-254ENST00000637050 NDUFC2-KCTD14E9PQ53 114 aa11.98□□□□□ -0.49
CLN3-254ENST00000637050 CNBPP62633 177 aaKnown RBP11.98□□□□□ -0.49
CLN3-254ENST00000637050 RAB37Q96AX2 223 aa11.98□□□□□ -0.49
CLN3-254ENST00000637050 TSPAN13O95857 204 aa11.97□□□□□ -0.49
CLN3-254ENST00000637050 TLX1NBP0CAT3 122 aa11.97□□□□□ -0.49
CLN3-254ENST00000637050 PRO1854Q9UHT4 67 aa11.97□□□□□ -0.49
CLN3-254ENST00000637050 ALMS1Q8TCU4 4167 aa11.94□□□□□ -0.5
CLN3-254ENST00000637050 Q6ZRP5 223 aa11.94□□□□□ -0.5
CLN3-254ENST00000637050 A0A087WTM6 91 aa11.94□□□□□ -0.5
CLN3-254ENST00000637050 DNAH10Q8IVF4 4471 aa11.93□□□□□ -0.5
CLN3-254ENST00000637050 IGKV2-28A0A075B6P5 120 aa11.93□□□□□ -0.5
CLN3-254ENST00000637050 NDUFC2O95298 119 aa11.93□□□□□ -0.5
CLN3-254ENST00000637050 IGKV2D-28P01615 120 aa11.93□□□□□ -0.5
CLN3-254ENST00000637050 XAGE1AQ9HD64 81 aa11.93□□□□□ -0.5
CLN3-254ENST00000637050 PGPEP1Q9NXJ5 209 aa11.93□□□□□ -0.5
CLN3-254ENST00000637050 IGLV2-33A0A075B6J2 118 aaPredicted RBP11.92□□□□□ -0.5
CLN3-254ENST00000637050 Q8N814 137 aa11.92□□□□□ -0.5
CLN3-254ENST00000637050 KMT2AQ03164 3969 aa11.91□□□□□ -0.5
CLN3-254ENST00000637050 GAGE2EQ4V326 116 aa11.91□□□□□ -0.5
CLN3-254ENST00000637050 Q8NDZ9 215 aa11.91□□□□□ -0.5
CLN3-254ENST00000637050 GAGE2DQ9UEU5 116 aa11.91□□□□□ -0.5
CLN3-254ENST00000637050 LOC107984640A0A0U1RRK4 108 aa11.9□□□□□ -0.5
CLN3-254ENST00000637050 RPL18AQ02543 176 aaKnown RBP11.9□□□□□ -0.5
CLN3-254ENST00000637050 NAA38Q9BRA0 125 aaKnown RBP11.9□□□□□ -0.5
CLN3-254ENST00000637050 LINC00337Q8N6G1 96 aa11.89□□□□□ -0.51
CLN3-254ENST00000637050 DNAH6Q9C0G6 4158 aa11.89□□□□□ -0.51
CLN3-254ENST00000637050 TRAV13-2A0A0B4J235 113 aa11.88□□□□□ -0.51
CLN3-254ENST00000637050 LCE6AA0A183 80 aa11.87□□□□□ -0.51
CLN3-254ENST00000637050 RPL13AP40429 203 aaKnown RBP11.87□□□□□ -0.51
CLN3-254ENST00000637050 PRR3P79522 188 aaKnown RBP11.87□□□□□ -0.51
CLN3-254ENST00000637050 C9orf129Q5T035 196 aaKnown RBP11.87□□□□□ -0.51
CLN3-254ENST00000637050 C9orf163Q8N9P6 203 aa11.87□□□□□ -0.51
CLN3-254ENST00000637050 H7C2G1 150 aa11.86□□□□□ -0.51
CLN3-254ENST00000637050 RTL8CO15255 209 aa11.85□□□□□ -0.51
CLN3-254ENST00000637050 VPREB1P12018 145 aa11.84□□□□□ -0.51
CLN3-254ENST00000637050 GAGE2BQ13066 116 aa11.84□□□□□ -0.51
CLN3-254ENST00000637050 NCR3O14931 201 aa11.84□□□□□ -0.51
CLN3-254ENST00000637050 Q1RN00 199 aa11.84□□□□□ -0.51
CLN3-254ENST00000637050 TRBV10-2A0A0K0K1G8 114 aa11.83□□□□□ -0.52
CLN3-254ENST00000637050 TNP2Q05952 138 aa11.83□□□□□ -0.52
CLN3-254ENST00000637050 C16orf90A8MZG2 172 aa11.82□□□□□ -0.52
CLN3-254ENST00000637050 PLA2G2DQ9UNK4 145 aa11.82□□□□□ -0.52
CLN3-254ENST00000637050 PKIGQ9Y2B9 76 aa11.81□□□□□ -0.52
CLN3-254ENST00000637050 A0A096LNI7 61 aa11.81□□□□□ -0.52
CLN3-254ENST00000637050 OR13C6PQ8NH95 151 aa11.81□□□□□ -0.52
CLN3-254ENST00000637050 SDIM1Q6ZPB5 146 aa11.8□□□□□ -0.52
CLN3-254ENST00000637050 ANAPC13Q9BS18 74 aa11.8□□□□□ -0.52
CLN3-254ENST00000637050 PSMB2P49721 201 aa11.79□□□□□ -0.52
CLN3-254ENST00000637050 TMEM126AQ9H061 195 aa11.79□□□□□ -0.52
CLN3-254ENST00000637050 DNAH2Q9P225 4427 aa11.78□□□□□ -0.52
CLN3-254ENST00000637050 TRIAP1O43715 76 aa11.78□□□□□ -0.52
CLN3-254ENST00000637050 SERTAD4-AS1Q5TG53 156 aa11.78□□□□□ -0.52
CLN3-254ENST00000637050 M0R378 163 aa11.78□□□□□ -0.52
CLN3-254ENST00000637050 LINC01620Q4KN68 170 aa11.78□□□□□ -0.52
CLN3-254ENST00000637050 IGLV5-37A0A075B6J1 123 aa11.77□□□□□ -0.53
CLN3-254ENST00000637050 IGLV6-57P01721 117 aa11.77□□□□□ -0.53
CLN3-254ENST00000637050 RPL28P46779 137 aaKnown RBP11.77□□□□□ -0.53
CLN3-254ENST00000637050 S100A7L2Q5SY68 101 aa11.77□□□□□ -0.53
CLN3-254ENST00000637050 SMIM11BQ8TCY0 68 aa11.77□□□□□ -0.53
CLN3-254ENST00000637050 IGKV2-24A0A0C4DH68 120 aa11.76□□□□□ -0.53
CLN3-254ENST00000637050 FAM168BA1KXE4 195 aa11.76□□□□□ -0.53
CLN3-254ENST00000637050 LYRM7Q5U5X0 104 aa11.76□□□□□ -0.53
CLN3-254ENST00000637050 KRTAP7-1Q8IUC3 87 aa11.76□□□□□ -0.53
CLN3-254ENST00000637050 SS18L2Q9UHA2 77 aa11.76□□□□□ -0.53
CLN3-254ENST00000637050 HYDINQ4G0P3 5121 aa11.75□□□□□ -0.53
CLN3-254ENST00000637050 H3BMG7 143 aa11.75□□□□□ -0.53
CLN3-254ENST00000637050 NKAPP1Q8N9T2 125 aa11.75□□□□□ -0.53
CLN3-254ENST00000637050 TRBV10-3A0A0K0K1G6 114 aa11.74□□□□□ -0.53
CLN3-254ENST00000637050 SCGB1C2P0DMR2 95 aa11.74□□□□□ -0.53
CLN3-254ENST00000637050 FUSP35637 526 aaKnown RBP eCLIP11.74□□□□□ -0.53
CLN3-254ENST00000637050 ETDBQ3ZM63 59 aa11.74□□□□□ -0.53
CLN3-254ENST00000637050 IGLV5-52A0A0A0MRZ9 124 aa11.73□□□□□ -0.53
CLN3-254ENST00000637050 COX6CP09669 75 aa11.73□□□□□ -0.53
CLN3-254ENST00000637050 CHTF8P0CG12 524 aa11.72□□□□□ -0.53
CLN3-254ENST00000637050 LINC00474Q9P2X8 69 aa11.72□□□□□ -0.53
CLN3-254ENST00000637050 FAM19A5Q7Z5A7 132 aaPredicted RBP11.71□□□□□ -0.53
CLN3-254ENST00000637050 DNAH17Q9UFH2 4485 aa11.71□□□□□ -0.53
CLN3-254ENST00000637050 C7orf33Q8WU49 177 aa11.71□□□□□ -0.54
CLN3-254ENST00000637050 C22orf24Q9Y442 160 aa11.71□□□□□ -0.54
CLN3-254ENST00000637050 TRBV20-1A0A075B6N2 111 aa11.7□□□□□ -0.54
CLN3-254ENST00000637050 A0A1W2PNN7 141 aa11.7□□□□□ -0.54
CLN3-254ENST00000637050 TCL1BO95988 128 aa11.69□□□□□ -0.54
CLN3-254ENST00000637050 KRTAP10-2P60368 255 aa11.69□□□□□ -0.54
CLN3-254ENST00000637050 PPDPFLQ8WWR9 84 aa11.69□□□□□ -0.54
CLN3-254ENST00000637050 CDIP1Q9H305 208 aa11.69□□□□□ -0.54
CLN3-254ENST00000637050 PRO0461Q9UI25 63 aa11.69□□□□□ -0.54
CLN3-254ENST00000637050 SACSQ9NZJ4 4579 aa11.68□□□□□ -0.54
CLN3-254ENST00000637050 PANO1I0J062 215 aa11.68□□□□□ -0.54
CLN3-254ENST00000637050 MRPL55Q7Z7F7 128 aaKnown RBP11.68□□□□□ -0.54
CLN3-254ENST00000637050 FRAS1Q86XX4 4008 aa11.67□□□□□ -0.54
CLN3-254ENST00000637050 TRAV23DV6A0A075B6W5 121 aa11.67□□□□□ -0.54
CLN3-254ENST00000637050 SPACA4Q8TDM5 124 aa11.67□□□□□ -0.54
CLN3-254ENST00000637050 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP11.67□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 68.2 ms