RNA–Protein interactions for RNA: ENST00000629179.1

PNKP-223, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 4

Gene PNKP, Length 811 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-223ENST00000629179 HIST2H2BEQ16778 126 aa8.6□□□□□ -1.03
PNKP-223ENST00000629179 HIST2H2BFQ5QNW6 126 aaPredicted RBP8.6□□□□□ -1.03
PNKP-223ENST00000629179 HIST1H2BHQ93079 126 aa8.6□□□□□ -1.03
PNKP-223ENST00000629179 HIST1H2BNQ99877 126 aa8.6□□□□□ -1.03
PNKP-223ENST00000629179 HIST1H2BMQ99879 126 aa8.6□□□□□ -1.03
PNKP-223ENST00000629179 SND1-IT1Q9HBX3 110 aa8.6□□□□□ -1.03
PNKP-223ENST00000629179 IGLV5-37A0A075B6J1 123 aa8.59□□□□□ -1.03
PNKP-223ENST00000629179 COX17Q14061 63 aa8.59□□□□□ -1.03
PNKP-223ENST00000629179 NKAPP1Q8N9T2 125 aa8.59□□□□□ -1.03
PNKP-223ENST00000629179 COA6Q5JTJ3 125 aaKnown RBP8.58□□□□□ -1.04
PNKP-223ENST00000629179 SFTA2Q6UW10 78 aa8.58□□□□□ -1.04
PNKP-223ENST00000629179 ZNF861PO60384 105 aa8.57□□□□□ -1.04
PNKP-223ENST00000629179 LINC00158P58513 81 aa8.57□□□□□ -1.04
PNKP-223ENST00000629179 C12orf57Q99622 126 aa8.57□□□□□ -1.04
PNKP-223ENST00000629179 A0A0U1RRA0 63 aa8.56□□□□□ -1.04
PNKP-223ENST00000629179 VPREB1P12018 145 aa8.56□□□□□ -1.04
PNKP-223ENST00000629179 PRR26Q8N8Z3 221 aa8.56□□□□□ -1.04
PNKP-223ENST00000629179 HSPB8Q9UJY1 196 aa8.56□□□□□ -1.04
PNKP-223ENST00000629179 BCE1O60756 84 aa8.55□□□□□ -1.04
PNKP-223ENST00000629179 KRTAP1-4P0C5Y4 121 aa8.55□□□□□ -1.04
PNKP-223ENST00000629179 Q8NDZ9 215 aa8.55□□□□□ -1.04
PNKP-223ENST00000629179 PMCHL2Q9BQD1 86 aa8.55□□□□□ -1.04
PNKP-223ENST00000629179 SMIM13P0DJ93 91 aa8.54□□□□□ -1.04
PNKP-223ENST00000629179 IGKV2-28A0A075B6P5 120 aa8.53□□□□□ -1.04
PNKP-223ENST00000629179 IGKV2D-28P01615 120 aa8.53□□□□□ -1.04
PNKP-223ENST00000629179 RPL24P83731 157 aaKnown RBP8.53□□□□□ -1.04
PNKP-223ENST00000629179 HIST3H2BBQ8N257 126 aa8.53□□□□□ -1.04
PNKP-223ENST00000629179 NDUFA12Q9UI09 145 aa8.53□□□□□ -1.04
PNKP-223ENST00000629179 DPM2O94777 84 aa8.52□□□□□ -1.05
PNKP-223ENST00000629179 PLNP26678 52 aa8.52□□□□□ -1.05
PNKP-223ENST00000629179 RPL28P46779 137 aaKnown RBP8.52□□□□□ -1.05
PNKP-223ENST00000629179 TSPEAR-AS2P59090 65 aa8.52□□□□□ -1.05
PNKP-223ENST00000629179 MEIG1Q5JSS6 88 aa8.52□□□□□ -1.05
PNKP-223ENST00000629179 IGLV1-50A0A075B6I6 118 aa8.51□□□□□ -1.05
PNKP-223ENST00000629179 LEPROTO15243 131 aa8.51□□□□□ -1.05
PNKP-223ENST00000629179 HERV-K104P63124 156 aa8.51□□□□□ -1.05
PNKP-223ENST00000629179 MAP1LC3CQ9BXW4 147 aa8.51□□□□□ -1.05
PNKP-223ENST00000629179 MYMXA0A1B0GTQ4 84 aa8.5□□□□□ -1.05
PNKP-223ENST00000629179 IGKCP01834 107 aa8.5□□□□□ -1.05
PNKP-223ENST00000629179 PLEKHB2Q96CS7 222 aa8.5□□□□□ -1.05
PNKP-223ENST00000629179 HMCN2Q8NDA2 5059 aa8.49□□□□□ -1.05
PNKP-223ENST00000629179 TMEM238C9JI98 176 aa8.49□□□□□ -1.05
PNKP-223ENST00000629179 UBE2AP49459 152 aa8.49□□□□□ -1.05
PNKP-223ENST00000629179 MIR7-3HGQ8N6C7 128 aa8.49□□□□□ -1.05
PNKP-223ENST00000629179 J3QQQ9 107 aa8.48□□□□□ -1.05
PNKP-223ENST00000629179 HERVK_113P61574 105 aa8.48□□□□□ -1.05
PNKP-223ENST00000629179 KRTAP13-1Q8IUC0 172 aa8.48□□□□□ -1.05
PNKP-223ENST00000629179 BOD1L2Q8IYS8 172 aa8.47□□□□□ -1.05
PNKP-223ENST00000629179 HIST1H2BLQ99880 126 aa8.47□□□□□ -1.05
PNKP-223ENST00000629179 TMEM126AQ9H061 195 aa8.47□□□□□ -1.05
PNKP-223ENST00000629179 LINC00587B1AMM8 73 aa8.46□□□□□ -1.06
PNKP-223ENST00000629179 SYS1-DBNDD2H3BUS1 97 aa8.46□□□□□ -1.06
PNKP-223ENST00000629179 M0R378 163 aa8.46□□□□□ -1.06
PNKP-223ENST00000629179 FAM19A1Q7Z5A9 133 aa8.46□□□□□ -1.06
PNKP-223ENST00000629179 LGALS3P17931 250 aaKnown RBP8.45□□□□□ -1.06
PNKP-223ENST00000629179 PRLHP81277 87 aa8.45□□□□□ -1.06
PNKP-223ENST00000629179 JOSD1Q15040 202 aaPredicted RBP8.45□□□□□ -1.06
PNKP-223ENST00000629179 DAND5Q8N907 189 aa8.45□□□□□ -1.06
PNKP-223ENST00000629179 NCR3O14931 201 aa8.44□□□□□ -1.06
PNKP-223ENST00000629179 RPL13AP40429 203 aaKnown RBP8.44□□□□□ -1.06
PNKP-223ENST00000629179 ANAPC11Q9NYG5 84 aa8.44□□□□□ -1.06
PNKP-223ENST00000629179 NMUP48645 174 aa8.43□□□□□ -1.06
PNKP-223ENST00000629179 PYY3Q5JQD4 70 aa8.43□□□□□ -1.06
PNKP-223ENST00000629179 A0A087X002 238 aa8.42□□□□□ -1.06
PNKP-223ENST00000629179 E9PLD3 99 aa8.42□□□□□ -1.06
PNKP-223ENST00000629179 LINC01545Q5VT33 79 aa8.42□□□□□ -1.06
PNKP-223ENST00000629179 PCP4L1A6NKN8 68 aa8.41□□□□□ -1.06
PNKP-223ENST00000629179 C3orf79P0CE67 100 aa8.41□□□□□ -1.06
PNKP-223ENST00000629179 PET117Q6UWS5 81 aa8.41□□□□□ -1.06
PNKP-223ENST00000629179 LOC107984156A0A0G2JMH3 177 aa8.4□□□□□ -1.06
PNKP-223ENST00000629179 TSTD3H0UI37 97 aa8.4□□□□□ -1.06
PNKP-223ENST00000629179 CRYGAP11844 174 aa8.4□□□□□ -1.06
PNKP-223ENST00000629179 ARL17AQ8IVW1 177 aa8.4□□□□□ -1.06
PNKP-223ENST00000629179 IGKV2D-26A0A0A0MRZ7 120 aa8.39□□□□□ -1.07
PNKP-223ENST00000629179 A0A0J9YXY3 114 aa8.39□□□□□ -1.07
PNKP-223ENST00000629179 TRBV10-3A0A0K0K1G6 114 aa8.39□□□□□ -1.07
PNKP-223ENST00000629179 PRYO14603 147 aa8.38□□□□□ -1.07
PNKP-223ENST00000629179 KRTDAPP60985 99 aa8.38□□□□□ -1.07
PNKP-223ENST00000629179 ADAMTSL4-AS1Q5T5F5 129 aa8.38□□□□□ -1.07
PNKP-223ENST00000629179 HIGD2AQ9BW72 106 aa8.38□□□□□ -1.07
PNKP-223ENST00000629179 KCNQ1DNQ9H478 68 aa8.38□□□□□ -1.07
PNKP-223ENST00000629179 KRTAP13-2Q52LG2 175 aa8.37□□□□□ -1.07
PNKP-223ENST00000629179 TYMSOSQ8TAI1 123 aa8.37□□□□□ -1.07
PNKP-223ENST00000629179 EIF4EBP3O60516 100 aaPredicted RBP8.36□□□□□ -1.07
PNKP-223ENST00000629179 NPC2P61916 151 aa8.36□□□□□ -1.07
PNKP-223ENST00000629179 SOSTDC1Q6X4U4 206 aa8.36□□□□□ -1.07
PNKP-223ENST00000629179 MIEN1Q9BRT3 115 aa8.36□□□□□ -1.07
PNKP-223ENST00000629179 SCGB1D1O95968 90 aa8.35□□□□□ -1.07
PNKP-223ENST00000629179 SPRR1AP35321 89 aa8.35□□□□□ -1.07
PNKP-223ENST00000629179 FAM229BQ4G0N7 80 aa8.35□□□□□ -1.07
PNKP-223ENST00000629179 TTTY13Q9BZ97 58 aa8.35□□□□□ -1.07
PNKP-223ENST00000629179 TRBV10-2A0A0K0K1G8 114 aa8.34□□□□□ -1.07
PNKP-223ENST00000629179 KRTAP4-16G5E9R7 235 aaPredicted RBP8.34□□□□□ -1.07
PNKP-223ENST00000629179 TSPAN13O95857 204 aa8.34□□□□□ -1.07
PNKP-223ENST00000629179 DDTP30046 118 aa8.34□□□□□ -1.07
PNKP-223ENST00000629179 LINC00337Q8N6G1 96 aa8.34□□□□□ -1.07
PNKP-223ENST00000629179 ETDCA0A1B0GVM5 59 aa8.33□□□□□ -1.08
PNKP-223ENST00000629179 NDUFC2O95298 119 aa8.33□□□□□ -1.08
PNKP-223ENST00000629179 LITAFQ99732 161 aa8.33□□□□□ -1.08
PNKP-223ENST00000629179 SPANXB1Q9NS25 103 aaPredicted RBP8.33□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 57.5 ms